Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1227
  Reference Plasmid   NZ_CP137609.1
  Reference Plasmid Size   137808
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0200254 AGLNKDKF_00124 111160 3 Gut 0.50 protein_coding synonymous_variant LOW 318T>C Gly106Gly
M0200255 AGLNKDKF_00124 111172 3 Gut 0.50 protein_coding synonymous_variant LOW 306T>A Gly102Gly
M0200256 AGLNKDKF_00124 111187 3 Gut 0.50 protein_coding synonymous_variant LOW 291T>C Val97Val
M0200257 AGLNKDKF_00124 111202 3 Gut 0.50 protein_coding synonymous_variant LOW 276T>C Asp92Asp
M0200258 AGLNKDKF_00124 111205 3 Gut 0.50 protein_coding synonymous_variant LOW 273T>C Phe91Phe
M0200259 AGLNKDKF_00124 111246 3 Gut 0.50 protein_coding missense_variant MODERATE 232G>A Ala78Thr
M0200260 AGLNKDKF_00124 111311 3 Gut 0.50 protein_coding missense_variant MODERATE 167G>A Arg56Lys
M0200261 AGLNKDKF_00125 111600 3 Gut 0.50 protein_coding synonymous_variant LOW 681C>T Gly227Gly
M0200262 AGLNKDKF_00125 111651 3 Gut 0.50 protein_coding synonymous_variant LOW 630T>C Asn210Asn
M0200263 AGLNKDKF_00125 111663 3 Gut 0.50 protein_coding synonymous_variant LOW 618C>T Asp206Asp
M0200264 AGLNKDKF_00125 111675 3 Gut 0.50 protein_coding synonymous_variant LOW 606C>T Gly202Gly
M0200265 AGLNKDKF_00125 111690 3 Gut 0.50 protein_coding synonymous_variant LOW 591A>G Ala197Ala
M0200266 AGLNKDKF_00125 111704 3 Gut 0.50 protein_coding missense_variant MODERATE 577G>A Ala193Thr
M0200267 AGLNKDKF_00125 111747 3 Gut 0.50 protein_coding synonymous_variant LOW 534A>G Glu178Glu
M0200268 AGLNKDKF_00125 111801 3 Gut 0.50 protein_coding synonymous_variant LOW 480G>A Lys160Lys
M0200269 AGLNKDKF_00125 111804 3 Gut 0.50 protein_coding synonymous_variant LOW 477T>C Ala159Ala
M0200270 AGLNKDKF_00125 111813 3 Gut 0.50 protein_coding synonymous_variant LOW 468G>A Arg156Arg
M0200271 AGLNKDKF_00125 111828 3 Gut 0.50 protein_coding synonymous_variant LOW 453C>T Phe151Phe
M0200272 AGLNKDKF_00125 111834 3 Gut 0.50 protein_coding synonymous_variant LOW 447C>T Ile149Ile
M0200273 AGLNKDKF_00125 111849 3 Gut 0.50 protein_coding synonymous_variant LOW 432C>T Phe144Phe
M0200274 AGLNKDKF_00125 111852 3 Gut 0.50 protein_coding synonymous_variant LOW 429G>T Ser143Ser
M0200275 AGLNKDKF_00125 111855 3 Gut 0.50 protein_coding synonymous_variant LOW 426C>A Ala142Ala
M0200276 AGLNKDKF_00125 111872 3 Gut 0.50 protein_coding missense_variant MODERATE 409T>G Ser137Ala
M0200277 AGLNKDKF_00125 111882 3 Gut 0.50 protein_coding synonymous_variant LOW 399C>T Val133Val
M0200278 AGLNKDKF_00125 111894 3 Gut 0.50 protein_coding missense_variant MODERATE 387G>T Glu129Asp
M0200279 AGLNKDKF_00125 111896 3 Gut 0.50 protein_coding missense_variant MODERATE 385G>A Glu129Lys
M0200280 AGLNKDKF_00125 111912 3 Gut 0.50 protein_coding synonymous_variant LOW 369A>G Lys123Lys
M0200281 AGLNKDKF_00125 111942 3 Gut 0.50 protein_coding synonymous_variant LOW 339A>C Val113Val
M0200282 AGLNKDKF_00125 111965 3 Gut 0.50 protein_coding missense_variant MODERATE 316C>T Leu106Phe
M0200283 AGLNKDKF_00125 112013 3 Gut 0.50 protein_coding missense_variant MODERATE 268A>C Asn90His
M0200284 AGLNKDKF_00125 112014 3 Gut 0.50 protein_coding synonymous_variant LOW 267G>A Glu89Glu
M0200285 AGLNKDKF_00125 112026 3 Gut 0.50 protein_coding synonymous_variant LOW 255T>C Val85Val
M0200286 AGLNKDKF_00125 112046 3 Gut 0.50 protein_coding missense_variant MODERATE 235G>A Asp79Asn
M0200287 AGLNKDKF_00125 112090 3 Gut 0.50 protein_coding missense_variant MODERATE 191G>A Arg64Gln
M0200288 AGLNKDKF_00125 112093 3 Gut 0.50 protein_coding missense_variant MODERATE 188A>G Gln63Arg
M0200289 AGLNKDKF_00125 112095 3 Gut 0.50 protein_coding synonymous_variant LOW 186C>T Gly62Gly
M0200290 AGLNKDKF_00125 112110 3 Gut 0.50 protein_coding synonymous_variant LOW 171T>C Ile57Ile
M0200291 AGLNKDKF_00125 112158 3 Gut 0.50 protein_coding synonymous_variant LOW 123A>G Leu41Leu
M0200292 AGLNKDKF_00125 112161 3 Gut 0.50 protein_coding synonymous_variant LOW 120C>T Val40Val
M0200293 AGLNKDKF_00125 112175 3 Gut 0.50 protein_coding missense_variant MODERATE 106A>G Thr36Ala
M0200294 AGLNKDKF_00125 112207 3 Gut 0.50 protein_coding missense_variant MODERATE 74C>A Ala25Asp
M0200295 AGLNKDKF_00125 112239 3 Gut 0.50 protein_coding synonymous_variant LOW 42C>T His14His
M0200296 AGLNKDKF_00117 112340 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4724T>C None
M0200297 AGLNKDKF_00117 112349 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4733A>C None
M0200298 AGLNKDKF_00117 112371 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4755A>G None
M0200299 AGLNKDKF_00117 112391 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4775G>A None
M0200300 AGLNKDKF_00117 112394 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4778G>A None
M0200301 AGLNKDKF_00126 112398 3 Gut 0.50 protein_coding splice_region_variant&stop_retained_variant LOW 491G>A Ter164Ter
M0200302 AGLNKDKF_00126 112403 3 Gut 0.50 protein_coding synonymous_variant LOW 486T>C Asp162Asp
M0200303 AGLNKDKF_00126 112478 4 Gut 0.67 protein_coding synonymous_variant LOW 411A>G Leu137Leu
M0200304 AGLNKDKF_00126 112586 4 Gut 0.67 protein_coding synonymous_variant LOW 303A>G Lys101Lys
M0200305 AGLNKDKF_00126 112619 4 Gut 0.67 protein_coding synonymous_variant LOW 270A>G Ala90Ala
M0200306 AGLNKDKF_00126 112637 4 Gut 0.67 protein_coding synonymous_variant LOW 252A>G Ala84Ala
M0200307 AGLNKDKF_00126 112697 4 Gut 0.67 protein_coding synonymous_variant LOW 192C>T Ser64Ser
M0200308 AGLNKDKF_00126 112778 4 Gut 0.67 protein_coding synonymous_variant LOW 111C>T Arg37Arg
M0200309 AGLNKDKF_00126 112784 4 Gut 0.67 protein_coding synonymous_variant LOW 105A>T Pro35Pro
M0200310 AGLNKDKF_00126 112805 4 Gut 0.67 protein_coding synonymous_variant LOW 84T>C Asn28Asn
M0200311 AGLNKDKF_00126 112844 4 Gut 0.67 protein_coding synonymous_variant LOW 45A>G Ser15Ser
M0200312 AGLNKDKF_00128 113375 4 Gut 0.67 protein_coding synonymous_variant LOW 753A>G Glu251Glu
M0200313 AGLNKDKF_00128 113399 4 Gut 0.67 protein_coding synonymous_variant LOW 729C>T Cys243Cys
M0200314 AGLNKDKF_00128 113408 4 Gut 0.67 protein_coding synonymous_variant LOW 720G>T Leu240Leu
M0200315 AGLNKDKF_00128 113411 4 Gut 0.67 protein_coding synonymous_variant LOW 717A>T Ala239Ala
M0200316 AGLNKDKF_00128 113420 4 Gut 0.67 protein_coding synonymous_variant LOW 708A>T Ala236Ala
M0200317 AGLNKDKF_00128 113429 4 Gut 0.67 protein_coding synonymous_variant LOW 699G>A Leu233Leu
M0200318 AGLNKDKF_00128 113435 4 Gut 0.67 protein_coding synonymous_variant LOW 693T>C Asn231Asn
M0200319 AGLNKDKF_00128 113438 4 Gut 0.67 protein_coding synonymous_variant LOW 690C>T Ser230Ser
M0200320 AGLNKDKF_00128 113443 4 Gut 0.67 protein_coding missense_variant MODERATE 685T>G Ser229Ala
M0200321 AGLNKDKF_00128 113444 4 Gut 0.67 protein_coding synonymous_variant LOW 684T>A Gly228Gly
M0200322 AGLNKDKF_00128 113450 4 Gut 0.67 protein_coding synonymous_variant LOW 678T>C Ala226Ala
M0200323 AGLNKDKF_00128 113657 4 Gut 0.67 protein_coding synonymous_variant LOW 471T>C Asn157Asn
M0200324 AGLNKDKF_00128 113668 4 Gut 0.67 protein_coding missense_variant MODERATE 460A>G Ile154Val
M0200325 AGLNKDKF_00128 113707 4 Gut 0.67 protein_coding missense_variant MODERATE 421A>T Met141Leu
M0200326 AGLNKDKF_00128 113724 4 Gut 0.67 protein_coding missense_variant MODERATE 404G>A Gly135Glu
M0200327 AGLNKDKF_00130 115290 4 Gut 0.67 protein_coding synonymous_variant LOW 1194T>C Gly398Gly
M0200328 AGLNKDKF_00130 115296 4 Gut 0.67 protein_coding synonymous_variant LOW 1188G>A Leu396Leu
M0200329 AGLNKDKF_00130 115302 4 Gut 0.67 protein_coding synonymous_variant LOW 1182T>C Tyr394Tyr
M0200330 AGLNKDKF_00130 115340 4 Gut 0.67 protein_coding missense_variant MODERATE 1144A>G Ile382Val
M0200331 AGLNKDKF_00130 115341 4 Gut 0.67 protein_coding synonymous_variant LOW 1143T>C Ile381Ile
M0200332 AGLNKDKF_00130 115359 4 Gut 0.67 protein_coding synonymous_variant LOW 1125A>T Ala375Ala
M0200333 AGLNKDKF_00130 115851 4 Gut 0.67 protein_coding synonymous_variant LOW 633A>T Thr211Thr
M0200334 AGLNKDKF_00131 117402 4 Gut 0.67 protein_coding missense_variant MODERATE 283A>C Thr95Pro
M0200335 AGLNKDKF_00131 117438 4 Gut 0.67 protein_coding missense_variant MODERATE 247C>A Pro83Thr
M0200336 AGLNKDKF_00131 117536 4 Gut 0.67 protein_coding missense_variant MODERATE 149C>T Thr50Ile
M0200337 AGLNKDKF_00132 117962 4 Gut 0.67 protein_coding missense_variant MODERATE 464T>C Leu155Ser
M0200338 AGLNKDKF_00132 118087 4 Gut 0.67 protein_coding synonymous_variant LOW 339T>C Asn113Asn
M0200339 AGLNKDKF_00134 119344 3 Gut 0.50 protein_coding missense_variant MODERATE 766T>C Tyr256His
M0200340 AGLNKDKF_00135 120795 4 Gut 0.67 protein_coding synonymous_variant LOW 453A>G Leu151Leu
M0200341 AGLNKDKF_00130 121225 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -4742C>T None
M0200342 AGLNKDKF_00136 121265 4 Gut 0.67 protein_coding synonymous_variant LOW 39T>C His13His
M0200343 AGLNKDKF_00132 122821 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -4396T>C None
M0200344 AGLNKDKF_00133 123544 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -4383C>T None
M0200345 AGLNKDKF_00133 123572 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -4411G>A None
M0200346 AGLNKDKF_00139 124600 5 Gut 0.83 protein_coding missense_variant MODERATE 958A>G Ser320Gly
M0200347 AGLNKDKF_00139 125064 4 Gut 0.67 protein_coding synonymous_variant LOW 1422T>C Ile474Ile
M0200348 AGLNKDKF_00139 125106 4 Gut 0.67 protein_coding synonymous_variant LOW 1464A>T Thr488Thr
M0200349 AGLNKDKF_00139 125124 4 Gut 0.67 protein_coding missense_variant MODERATE 1482A>T Lys494Asn
M0200350 AGLNKDKF_00142 125131 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -632A>T None
M0200351 AGLNKDKF_00142 125135 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -628T>A None
M0200352 AGLNKDKF_00142 125152 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -611G>A None
M0200353 AGLNKDKF_00142 125157 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -606G>A None
M0200354 AGLNKDKF_00142 125162 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -601A>G None
M0200355 AGLNKDKF_00140 125194 5 Gut 0.83 protein_coding synonymous_variant LOW 99A>G Lys33Lys
M0200356 AGLNKDKF_00140 125274 4 Gut 0.67 protein_coding missense_variant MODERATE 19T>G Ser7Ala
M0200357 AGLNKDKF_00141 125332 4 Gut 0.67 protein_coding missense_variant MODERATE 250G>A Val84Ile
M0200358 AGLNKDKF_00141 125357 4 Gut 0.67 protein_coding synonymous_variant LOW 225G>A Leu75Leu
M0200359 AGLNKDKF_00143 126321 3 Gut 0.50 protein_coding missense_variant MODERATE 59G>A Ser20Asn
M0200360 AGLNKDKF_00143 126323 3 Gut 0.50 protein_coding missense_variant MODERATE 61A>G Thr21Ala
M0200361 AGLNKDKF_00143 126328 3 Gut 0.50 protein_coding synonymous_variant LOW 66A>C Ile22Ile
M0200362 AGLNKDKF_00143 126334 3 Gut 0.50 protein_coding synonymous_variant LOW 72C>T Asp24Asp
M0200363 AGLNKDKF_00143 126343 3 Gut 0.50 protein_coding synonymous_variant LOW 81T>C Ile27Ile
M0200364 AGLNKDKF_00143 126352 3 Gut 0.50 protein_coding synonymous_variant LOW 90G>A Leu30Leu
M0200365 AGLNKDKF_00143 126364 3 Gut 0.50 protein_coding synonymous_variant LOW 102A>G Arg34Arg
M0200366 AGLNKDKF_00143 126368 3 Gut 0.50 protein_coding missense_variant MODERATE 106A>G Ile36Val
M0200367 AGLNKDKF_00143 126373 3 Gut 0.50 protein_coding synonymous_variant LOW 111T>C Phe37Phe
M0200368 AGLNKDKF_00143 126391 3 Gut 0.50 protein_coding synonymous_variant LOW 129A>T Ser43Ser
M0200369 AGLNKDKF_00143 126454 4 Gut 0.67 protein_coding synonymous_variant LOW 192A>G Pro64Pro
M0200370 AGLNKDKF_00143 126456 4 Gut 0.67 protein_coding missense_variant MODERATE 194G>A Arg65His
M0200371 AGLNKDKF_00143 126464 4 Gut 0.67 protein_coding missense_variant MODERATE 202G>A Asp68Asn
M0200372 AGLNKDKF_00143 126477 4 Gut 0.67 protein_coding missense_variant MODERATE 215T>C Val72Ala
M0200373 AGLNKDKF_00143 126493 4 Gut 0.67 protein_coding synonymous_variant LOW 231T>C Ile77Ile
M0200374 AGLNKDKF_00143 126523 4 Gut 0.67 protein_coding synonymous_variant LOW 261T>A Thr87Thr
M0200375 AGLNKDKF_00143 126544 4 Gut 0.67 protein_coding synonymous_variant LOW 282C>T Gly94Gly
M0200376 AGLNKDKF_00143 126547 4 Gut 0.67 protein_coding synonymous_variant LOW 285A>G Ser95Ser
M0200377 AGLNKDKF_00143 126554 4 Gut 0.67 protein_coding missense_variant MODERATE 292A>C Thr98Pro
M0200378 AGLNKDKF_00143 126571 4 Gut 0.67 protein_coding synonymous_variant LOW 309A>G Leu103Leu
M0200379 AGLNKDKF_00143 126574 4 Gut 0.67 protein_coding synonymous_variant LOW 312C>T Pro104Pro
M0200380 AGLNKDKF_00143 126575 4 Gut 0.67 protein_coding missense_variant MODERATE 313A>G Lys105Glu
M0200381 AGLNKDKF_00143 126625 4 Gut 0.67 protein_coding synonymous_variant LOW 363C>T Thr121Thr
M0200382 AGLNKDKF_00143 126639 4 Gut 0.67 protein_coding missense_variant MODERATE 377G>A Ser126Asn
M0200383 AGLNKDKF_00143 126640 4 Gut 0.67 protein_coding synonymous_variant LOW 378C>T Ser126Ser
M0200384 AGLNKDKF_00143 126655 4 Gut 0.67 protein_coding synonymous_variant LOW 393C>T Cys131Cys
M0200385 AGLNKDKF_00143 126671 4 Gut 0.67 protein_coding missense_variant MODERATE 409A>G Ile137Val
M0200386 AGLNKDKF_00143 126694 4 Gut 0.67 protein_coding synonymous_variant LOW 432T>C Ser144Ser
M0200387 AGLNKDKF_00143 126710 4 Gut 0.67 protein_coding missense_variant MODERATE 448G>A Ala150Thr
M0200388 AGLNKDKF_00143 126711 4 Gut 0.67 protein_coding missense_variant MODERATE 449C>T Ala150Val
M0200389 AGLNKDKF_00143 126718 4 Gut 0.67 protein_coding synonymous_variant LOW 456T>C Thr152Thr
M0200390 AGLNKDKF_00143 126759 4 Gut 0.67 protein_coding missense_variant MODERATE 497C>T Pro166Leu
M0200391 AGLNKDKF_00143 126851 4 Gut 0.67 protein_coding missense_variant MODERATE 589C>A Gln197Lys
M0200392 AGLNKDKF_00143 126892 4 Gut 0.67 protein_coding synonymous_variant LOW 630G>A Glu210Glu
M0200393 AGLNKDKF_00143 126896 4 Gut 0.67 protein_coding synonymous_variant LOW 634T>C Leu212Leu
M0200394 AGLNKDKF_00143 126948 4 Gut 0.67 protein_coding missense_variant MODERATE 686G>T Gly229Val
M0200395 AGLNKDKF_00143 126991 4 Gut 0.67 protein_coding synonymous_variant LOW 729G>A Gly243Gly
M0200396 AGLNKDKF_00143 127040 4 Gut 0.67 protein_coding synonymous_variant LOW 778T>C Leu260Leu
M0200397 AGLNKDKF_00143 127048 4 Gut 0.67 protein_coding synonymous_variant LOW 786T>C Pro262Pro
M0200398 AGLNKDKF_00143 127052 4 Gut 0.67 protein_coding missense_variant MODERATE 790G>A Glu264Lys
M0200399 AGLNKDKF_00143 127150 4 Gut 0.67 protein_coding synonymous_variant LOW 888G>A Glu296Glu
M0200400 AGLNKDKF_00143 127183 4 Gut 0.67 protein_coding synonymous_variant LOW 921T>A Thr307Thr
M0200401 AGLNKDKF_00143 127234 4 Gut 0.67 protein_coding synonymous_variant LOW 972T>C Val324Val
M0200402 AGLNKDKF_00143 127240 4 Gut 0.67 protein_coding synonymous_variant LOW 978A>G Gly326Gly
M0200403 AGLNKDKF_00143 127255 4 Gut 0.67 protein_coding synonymous_variant LOW 993A>T Ala331Ala
M0200404 AGLNKDKF_00143 127258 4 Gut 0.67 protein_coding synonymous_variant LOW 996T>C Cys332Cys
M0200405 AGLNKDKF_00143 127264 4 Gut 0.67 protein_coding synonymous_variant LOW 1002T>C Arg334Arg
M0200406 AGLNKDKF_00143 127291 4 Gut 0.67 protein_coding synonymous_variant LOW 1029C>A Leu343Leu
M0200407 AGLNKDKF_00143 127293 4 Gut 0.67 protein_coding missense_variant MODERATE 1031G>A Arg344Lys
M0200408 AGLNKDKF_00143 127304 4 Gut 0.67 protein_coding missense_variant MODERATE 1042A>G Asn348Asp
M0200409 AGLNKDKF_00143 127321 4 Gut 0.67 protein_coding synonymous_variant LOW 1059A>G Glu353Glu
M0200410 AGLNKDKF_00143 127338 4 Gut 0.67 protein_coding missense_variant MODERATE 1076G>A Arg359Lys
M0200411 AGLNKDKF_00143 127366 4 Gut 0.67 protein_coding synonymous_variant LOW 1104T>A Gly368Gly
M0200412 AGLNKDKF_00143 127402 4 Gut 0.67 protein_coding synonymous_variant LOW 1140C>T Thr380Thr
M0200413 AGLNKDKF_00143 127423 4 Gut 0.67 protein_coding missense_variant MODERATE 1161G>C Glu387Asp
M0200414 AGLNKDKF_00143 127426 4 Gut 0.67 protein_coding synonymous_variant LOW 1164G>A Gly388Gly
M0200415 AGLNKDKF_00143 127427 4 Gut 0.67 protein_coding missense_variant MODERATE 1165A>G Ile389Val
M0200416 AGLNKDKF_00143 127435 4 Gut 0.67 protein_coding synonymous_variant LOW 1173T>A Thr391Thr
M0200417 AGLNKDKF_00140 127747 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -2455T>C None
M0200418 AGLNKDKF_00140 127760 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -2468A>G None
M0200419 AGLNKDKF_00144 127883 4 Gut 0.67 protein_coding missense_variant MODERATE 10A>C Ile4Leu
M0200420 AGLNKDKF_00144 127889 4 Gut 0.67 protein_coding missense_variant MODERATE 16T>C Phe6Leu
M0200421 AGLNKDKF_00140 128002 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -2710T>C None
M0200422 AGLNKDKF_00140 128003 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -2711A>G None
M0200423 AGLNKDKF_00140 128034 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -2742C>T None
M0200424 AGLNKDKF_00140 128110 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -2818C>T None
M0200425 AGLNKDKF_00140 128118 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -2826G>A None
M0200426 AGLNKDKF_00145 128651 4 Gut 0.67 protein_coding missense_variant MODERATE 227A>G Tyr76Cys
M0200427 AGLNKDKF_00145 128667 4 Gut 0.67 protein_coding synonymous_variant LOW 243G>A Ala81Ala
M0200428 AGLNKDKF_00145 128683 4 Gut 0.67 protein_coding missense_variant MODERATE 259A>G Ile87Val
M0200429 AGLNKDKF_00145 128694 4 Gut 0.67 protein_coding synonymous_variant LOW 270C>T Ser90Ser
M0200430 AGLNKDKF_00145 128798 4 Gut 0.67 protein_coding missense_variant MODERATE 374G>A Gly125Glu
M0200431 AGLNKDKF_00145 129018 4 Gut 0.67 protein_coding synonymous_variant LOW 594A>G Lys198Lys
M0200432 AGLNKDKF_00145 129130 4 Gut 0.67 protein_coding missense_variant MODERATE 706T>C Tyr236His
M0200433 AGLNKDKF_00145 129367 4 Gut 0.67 protein_coding missense_variant MODERATE 943G>A Ala315Thr
M0200434 AGLNKDKF_00140 129416 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -4124T>C None
M0200435 AGLNKDKF_00146 129519 3 Gut 0.50 protein_coding missense_variant MODERATE 13A>C Ile5Leu
M0200436 AGLNKDKF_00146 129651 4 Gut 0.67 protein_coding missense_variant MODERATE 145G>A Gly49Arg
M0200437 AGLNKDKF_00146 129660 4 Gut 0.67 protein_coding stop_gained HIGH 154C>T Arg52*
M0200438 AGLNKDKF_00146 129661 4 Gut 0.67 protein_coding missense_variant MODERATE 155G>A Arg52Gln
M0200439 AGLNKDKF_00146 129733 4 Gut 0.67 protein_coding missense_variant MODERATE 227A>G Glu76Gly
M0200440 AGLNKDKF_00146 129795 4 Gut 0.67 protein_coding missense_variant MODERATE 289G>A Asp97Asn
M0200441 AGLNKDKF_00146 129823 4 Gut 0.67 protein_coding missense_variant MODERATE 317A>G Lys106Arg
M0200442 AGLNKDKF_00140 130020 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -4728G>A None
M0200443 AGLNKDKF_00140 130059 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -4767C>A None
M0200444 AGLNKDKF_00140 130074 4 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -4782G>A None
M0200445 AGLNKDKF_00147 130251 4 Gut 0.67 protein_coding missense_variant MODERATE 2183C>T Ala728Val
M0200446 AGLNKDKF_00147 130913 4 Gut 0.67 protein_coding synonymous_variant LOW 1521C>T Val507Val
M0200447 AGLNKDKF_00147 130919 4 Gut 0.67 protein_coding synonymous_variant LOW 1515A>G Lys505Lys
M0200448 AGLNKDKF_00147 130967 4 Gut 0.67 protein_coding synonymous_variant LOW 1467A>C Gly489Gly
M0200449 AGLNKDKF_00147 131000 4 Gut 0.67 protein_coding synonymous_variant LOW 1434C>T Asp478Asp
M0200450 AGLNKDKF_00147 131030 4 Gut 0.67 protein_coding synonymous_variant LOW 1404C>T Pro468Pro
M0200451 AGLNKDKF_00147 131071 4 Gut 0.67 protein_coding missense_variant MODERATE 1363G>T Ala455Ser
M0200452 AGLNKDKF_00147 131090 4 Gut 0.67 protein_coding synonymous_variant LOW 1344C>T Ile448Ile
M0200453 AGLNKDKF_00147 131106 4 Gut 0.67 protein_coding missense_variant MODERATE 1328G>C Gly443Ala
M0200454 AGLNKDKF_00147 131111 4 Gut 0.67 protein_coding synonymous_variant LOW 1323T>C Asn441Asn
M0200455 AGLNKDKF_00147 131114 4 Gut 0.67 protein_coding synonymous_variant LOW 1320A>T Val440Val
M0200456 AGLNKDKF_00147 131124 4 Gut 0.67 protein_coding missense_variant MODERATE 1310G>A Ser437Asn
M0200457 AGLNKDKF_00147 131130 4 Gut 0.67 protein_coding missense_variant MODERATE 1304C>A Ala435Glu
M0200458 AGLNKDKF_00147 131132 4 Gut 0.67 protein_coding synonymous_variant LOW 1302G>A Glu434Glu
M0200459 AGLNKDKF_00147 131138 4 Gut 0.67 protein_coding synonymous_variant LOW 1296A>G Glu432Glu
M0200460 AGLNKDKF_00147 131180 4 Gut 0.67 protein_coding synonymous_variant LOW 1254T>C Ala418Ala
M0200461 AGLNKDKF_00147 131185 4 Gut 0.67 protein_coding synonymous_variant LOW 1249C>T Leu417Leu
M0200462 AGLNKDKF_00147 131197 4 Gut 0.67 protein_coding synonymous_variant LOW 1237C>T Leu413Leu
M0200463 AGLNKDKF_00147 131198 4 Gut 0.67 protein_coding synonymous_variant LOW 1236G>A Thr412Thr
M0200464 AGLNKDKF_00147 131213 4 Gut 0.67 protein_coding synonymous_variant LOW 1221A>G Lys407Lys
M0200465 AGLNKDKF_00147 131228 4 Gut 0.67 protein_coding synonymous_variant LOW 1206A>G Leu402Leu
M0200466 AGLNKDKF_00147 131249 4 Gut 0.67 protein_coding synonymous_variant LOW 1185C>T Asp395Asp
M0200467 AGLNKDKF_00147 131264 4 Gut 0.67 protein_coding synonymous_variant LOW 1170T>C Ser390Ser
M0200468 AGLNKDKF_00147 131273 4 Gut 0.67 protein_coding synonymous_variant LOW 1161A>G Ala387Ala
M0200469 AGLNKDKF_00147 131274 4 Gut 0.67 protein_coding missense_variant MODERATE 1160C>T Ala387Val
M0200470 AGLNKDKF_00147 131479 4 Gut 0.67 protein_coding missense_variant MODERATE 955C>T Pro319Ser
M0200471 AGLNKDKF_00147 131547 4 Gut 0.67 protein_coding missense_variant MODERATE 887G>A Ser296Asn
M0200472 AGLNKDKF_00147 131650 4 Gut 0.67 protein_coding synonymous_variant LOW 784T>C Leu262Leu
M0200473 AGLNKDKF_00147 131684 4 Gut 0.67 protein_coding synonymous_variant LOW 750C>T Asn250Asn
M0200474 AGLNKDKF_00147 131717 4 Gut 0.67 protein_coding synonymous_variant LOW 717T>C Gly239Gly
M0200475 AGLNKDKF_00147 131741 4 Gut 0.67 protein_coding synonymous_variant LOW 693C>T Asp231Asp
M0200476 AGLNKDKF_00147 131759 4 Gut 0.67 protein_coding synonymous_variant LOW 675G>A Val225Val
M0200477 AGLNKDKF_00147 131783 4 Gut 0.67 protein_coding synonymous_variant LOW 651A>G Lys217Lys
M0200478 AGLNKDKF_00147 131846 4 Gut 0.67 protein_coding synonymous_variant LOW 588C>A Thr196Thr
M0200479 AGLNKDKF_00133 123563 3 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -4402A>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
LIPBPAJH_00037 ARO:3002626 100 9.66e-218 1 287 1.0000 1.0000 aminoglycoside antibiotic ANT(6) antibiotic inactivation
LIPBPAJH_00040 ARO:3002597 99.8 0 1 479 1.0000 1.0000 aminoglycoside antibiotic aminoglycoside bifunctional resistance protein antibiotic inactivation
AGLNKDKF_00037 ARO:3002626 100 9.66e-218 1 287 1.0000 1.0000 aminoglycoside antibiotic ANT(6) antibiotic inactivation
AGLNKDKF_00040 ARO:3002597 99.8 0 1 479 1.0000 1.0000 aminoglycoside antibiotic aminoglycoside bifunctional resistance protein antibiotic inactivation






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
LIPBPAJH_00130 2.A.21.3.20 74.7 1.6e-208 1 498 0.9940 0.9960 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
AGLNKDKF_00130 2.A.21.3.20 74.7 1.6e-208 1 498 0.9940 0.9960 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family