Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1244
  Reference Plasmid   NZ_CP141737.1
  Reference Plasmid Size   137708
  Reference Plasmid GC Content   0.49
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0200623 JFCGFDMB_00014 14933 4 Gut 0.13 protein_coding synonymous_variant LOW 2130G>A Thr710Thr
M0200624 JFCGFDMB_00014 14960 4 Gut 0.13 protein_coding synonymous_variant LOW 2157C>T Asn719Asn
M0200625 JFCGFDMB_00014 14990 4 Gut 0.13 protein_coding synonymous_variant LOW 2187A>G Lys729Lys
M0200626 JFCGFDMB_00014 14999 4 Gut 0.13 protein_coding synonymous_variant LOW 2196G>C Val732Val
M0200627 JFCGFDMB_00014 15068 5 Gut 0.17 protein_coding synonymous_variant LOW 2265C>T Phe755Phe
M0200628 JFCGFDMB_00014 15080 4 Gut 0.13 protein_coding synonymous_variant LOW 2277A>G Gly759Gly
M0200629 JFCGFDMB_00014 15093 4 Gut 0.13 protein_coding missense_variant MODERATE 2290G>A Asp764Asn
M0200630 JFCGFDMB_00014 15098 4 Gut 0.13 protein_coding synonymous_variant LOW 2295C>T Ser765Ser
M0200631 JFCGFDMB_00014 15160 4 Gut 0.13 protein_coding missense_variant MODERATE 2357T>C Val786Ala
M0200632 JFCGFDMB_00014 15167 4 Gut 0.13 protein_coding synonymous_variant LOW 2364G>T Gly788Gly
M0200633 JFCGFDMB_00014 15184 4 Gut 0.13 protein_coding missense_variant MODERATE 2381A>C Gln794Pro
M0200634 JFCGFDMB_00015 15306 4 Gut 0.13 protein_coding synonymous_variant LOW 66T>G Thr22Thr
M0200635 JFCGFDMB_00015 15312 4 Gut 0.13 protein_coding synonymous_variant LOW 72A>G Ala24Ala
M0200636 JFCGFDMB_00015 15441 4 Gut 0.13 protein_coding synonymous_variant LOW 201T>C Gly67Gly
M0200637 JFCGFDMB_00015 15486 4 Gut 0.13 protein_coding synonymous_variant LOW 246T>C Thr82Thr
M0200638 JFCGFDMB_00015 15492 4 Gut 0.13 protein_coding synonymous_variant LOW 252G>T Val84Val
M0200639 JFCGFDMB_00015 15498 4 Gut 0.13 protein_coding synonymous_variant LOW 258A>G Thr86Thr
M0200640 JFCGFDMB_00015 15501 4 Gut 0.13 protein_coding synonymous_variant LOW 261G>A Pro87Pro
M0200641 JFCGFDMB_00015 15519 4 Gut 0.13 protein_coding synonymous_variant LOW 279A>G Lys93Lys
M0200642 JFCGFDMB_00015 15537 4 Gut 0.13 protein_coding synonymous_variant LOW 297A>G Thr99Thr
M0200643 JFCGFDMB_00015 15553 4 Gut 0.13 protein_coding missense_variant MODERATE 313G>C Ala105Pro
M0200644 JFCGFDMB_00015 15576 4 Gut 0.13 protein_coding synonymous_variant LOW 336T>C Asp112Asp
M0200645 JFCGFDMB_00015 15612 4 Gut 0.13 protein_coding synonymous_variant LOW 372T>A Ile124Ile
M0200646 JFCGFDMB_00015 15642 4 Gut 0.13 protein_coding synonymous_variant LOW 402G>A Ala134Ala
M0200647 JFCGFDMB_00015 15759 4 Gut 0.13 protein_coding synonymous_variant LOW 519T>G Leu173Leu
M0200648 JFCGFDMB_00015 15792 4 Gut 0.13 protein_coding synonymous_variant LOW 552T>C Gly184Gly
M0200649 JFCGFDMB_00015 15829 4 Gut 0.13 protein_coding missense_variant MODERATE 589G>A Asp197Asn
M0200650 JFCGFDMB_00011 16037 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4765G>A None
M0200651 JFCGFDMB_00016 16106 5 Gut 0.17 protein_coding missense_variant MODERATE 40A>G Thr14Ala
M0200652 JFCGFDMB_00016 16108 5 Gut 0.17 protein_coding synonymous_variant LOW 42C>A Thr14Thr
M0200653 JFCGFDMB_00016 16165 4 Gut 0.13 protein_coding synonymous_variant LOW 99C>T Gly33Gly
M0200654 JFCGFDMB_00016 16294 5 Gut 0.17 protein_coding synonymous_variant LOW 228T>C Ser76Ser
M0200655 JFCGFDMB_00017 16559 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -238G>A None
M0200656 JFCGFDMB_00017 16560 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -237A>G None
M0200657 JFCGFDMB_00017 16580 6 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -217T>G None
M0200658 JFCGFDMB_00017 16582 6 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -215C>A None
M0200659 JFCGFDMB_00017 16658 6 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -139A>C None
M0200660 JFCGFDMB_00017 16676 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -121A>T None
M0200661 JFCGFDMB_00017 17550 3 Gut 0.10 protein_coding missense_variant MODERATE 754A>G Ile252Val
M0200662 JFCGFDMB_00018 17576 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -219A>C None
M0200663 JFCGFDMB_00018 17592 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -203A>G None
M0200664 JFCGFDMB_00018 17630 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -165T>A None
M0200665 JFCGFDMB_00018 17637 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -158G>T None
M0200666 JFCGFDMB_00018 17645 6 Gut 0.20 protein_coding upstream_gene_variant MODIFIER -150A>G None
M0200667 JFCGFDMB_00018 17669 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -126A>C None
M0200668 JFCGFDMB_00018 18269 5 Gut 0.17 protein_coding missense_variant MODERATE 475A>G Ile159Val
M0200669 JFCGFDMB_00018 18279 5 Gut 0.17 protein_coding missense_variant MODERATE 485C>A Ala162Glu
M0200670 JFCGFDMB_00018 18388 5 Gut 0.17 protein_coding synonymous_variant LOW 594G>T Leu198Leu
M0200671 JFCGFDMB_00018 18403 6 Gut 0.20 protein_coding synonymous_variant LOW 609T>C Gly203Gly
M0200672 JFCGFDMB_00018 18520 5 Gut 0.17 protein_coding synonymous_variant LOW 726G>A Glu242Glu
M0200673 JFCGFDMB_00020 19532 5 Gut 0.17 protein_coding synonymous_variant LOW 129G>C Gly43Gly
M0200674 JFCGFDMB_00020 19535 5 Gut 0.17 protein_coding synonymous_variant LOW 132A>G Val44Val
M0200675 JFCGFDMB_00020 19541 5 Gut 0.17 protein_coding synonymous_variant LOW 138A>G Glu46Glu
M0200676 JFCGFDMB_00020 19550 5 Gut 0.17 protein_coding synonymous_variant LOW 147T>C Gly49Gly
M0200677 JFCGFDMB_00020 19569 3 Gut 0.10 protein_coding missense_variant MODERATE 166G>A Val56Met
M0200678 JFCGFDMB_00020 19570 5 Gut 0.17 protein_coding missense_variant MODERATE 167T>C Val56Ala
M0200679 JFCGFDMB_00020 19586 5 Gut 0.17 protein_coding synonymous_variant LOW 183A>G Gln61Gln
M0200680 JFCGFDMB_00020 19901 3 Gut 0.10 protein_coding synonymous_variant LOW 498C>T Val166Val
M0200681 JFCGFDMB_00020 19916 5 Gut 0.17 protein_coding synonymous_variant LOW 513A>G Thr171Thr
M0200682 JFCGFDMB_00020 19921 5 Gut 0.17 protein_coding missense_variant MODERATE 518A>G Glu173Gly
M0200683 JFCGFDMB_00020 19925 5 Gut 0.17 protein_coding synonymous_variant LOW 522C>T Ala174Ala
M0200684 JFCGFDMB_00020 19930 3 Gut 0.10 protein_coding missense_variant MODERATE 527A>C Lys176Thr
M0200685 JFCGFDMB_00020 19931 3 Gut 0.10 protein_coding synonymous_variant LOW 528G>A Lys176Lys
M0200686 JFCGFDMB_00020 19968 3 Gut 0.10 protein_coding missense_variant MODERATE 565G>A Glu189Lys
M0200687 JFCGFDMB_00020 19996 3 Gut 0.10 protein_coding missense_variant MODERATE 593C>T Thr198Ile
M0200688 JFCGFDMB_00020 20025 3 Gut 0.10 protein_coding missense_variant MODERATE 622T>G Ser208Ala
M0200689 JFCGFDMB_00021 20231 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -59G>T None
M0200690 JFCGFDMB_00022 20591 4 Gut 0.13 protein_coding missense_variant MODERATE 220A>G Ile74Val
M0200691 JFCGFDMB_00022 20925 5 Gut 0.17 protein_coding missense_variant MODERATE 554T>A Leu185Gln
M0200692 JFCGFDMB_00023 21199 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -96A>G None
M0200693 JFCGFDMB_00023 21241 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -54T>C None
M0200694 JFCGFDMB_00023 21280 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -15T>C None
M0200695 JFCGFDMB_00023 21310 5 Gut 0.17 protein_coding missense_variant MODERATE 16G>A Val6Ile
M0200696 JFCGFDMB_00023 21363 5 Gut 0.17 protein_coding synonymous_variant LOW 69T>C Val23Val
M0200697 JFCGFDMB_00023 21364 5 Gut 0.17 protein_coding missense_variant MODERATE 70C>G Leu24Val
M0200698 JFCGFDMB_00023 21372 5 Gut 0.17 protein_coding synonymous_variant LOW 78G>A Lys26Lys
M0200699 JFCGFDMB_00023 21376 5 Gut 0.17 protein_coding missense_variant MODERATE 82G>A Val28Ile
M0200700 JFCGFDMB_00023 21390 5 Gut 0.17 protein_coding synonymous_variant LOW 96T>A Leu32Leu
M0200701 JFCGFDMB_00023 21402 5 Gut 0.17 protein_coding synonymous_variant LOW 108G>A Gly36Gly
M0200702 JFCGFDMB_00023 21412 5 Gut 0.17 protein_coding missense_variant MODERATE 118T>A Tyr40Asn
M0200703 JFCGFDMB_00023 21432 3 Gut 0.10 protein_coding missense_variant MODERATE 138C>A Asp46Glu
M0200704 JFCGFDMB_00023 21520 5 Gut 0.17 protein_coding missense_variant MODERATE 226A>T Thr76Ser
M0200705 JFCGFDMB_00024 21556 4 Gut 0.13 protein_coding synonymous_variant LOW 42C>A Val14Val
M0200706 JFCGFDMB_00024 22283 3 Gut 0.10 protein_coding missense_variant MODERATE 769A>G Ser257Gly
M0200707 JFCGFDMB_00024 22285 3 Gut 0.10 protein_coding missense_variant MODERATE 771T>G Ser257Arg
M0200708 JFCGFDMB_00024 22294 3 Gut 0.10 protein_coding synonymous_variant LOW 780G>A Ala260Ala
M0200709 JFCGFDMB_00024 22351 3 Gut 0.10 protein_coding synonymous_variant LOW 837G>A Gly279Gly
M0200710 JFCGFDMB_00025 23289 5 Gut 0.17 protein_coding synonymous_variant LOW 852C>A Gly284Gly
M0200711 JFCGFDMB_00025 23505 3 Gut 0.10 protein_coding synonymous_variant LOW 1068G>A Lys356Lys
M0200712 JFCGFDMB_00025 23721 3 Gut 0.10 protein_coding synonymous_variant LOW 1284A>G Thr428Thr
M0200713 JFCGFDMB_00025 23875 3 Gut 0.10 protein_coding missense_variant MODERATE 1438A>G Lys480Glu
M0200714 JFCGFDMB_00025 24002 3 Gut 0.10 protein_coding missense_variant MODERATE 1565C>T Ala522Val
M0200715 JFCGFDMB_00082 82672 3 Gut 0.10 protein_coding synonymous_variant LOW 171G>A Ala57Ala
M0200716 JFCGFDMB_00082 82702 3 Gut 0.10 protein_coding synonymous_variant LOW 201G>A Lys67Lys
M0200717 JFCGFDMB_00084 82734 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -852A>T None
M0200718 JFCGFDMB_00083 82762 3 Gut 0.10 protein_coding missense_variant MODERATE 244G>A Asp82Asn
M0200719 JFCGFDMB_00083 82764 3 Gut 0.10 protein_coding missense_variant MODERATE 242A>G Glu81Gly
M0200720 JFCGFDMB_00083 82925 3 Gut 0.10 protein_coding synonymous_variant LOW 81G>A Thr27Thr
M0200721 JFCGFDMB_00083 82945 3 Gut 0.10 protein_coding missense_variant MODERATE 61G>T Ala21Ser
M0200722 JFCGFDMB_00083 83032 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -27A>G None
M0200723 JFCGFDMB_00083 83053 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -48A>G None
M0200724 JFCGFDMB_00083 83057 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -52G>A None
M0200725 JFCGFDMB_00083 83058 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -53T>C None
M0200726 JFCGFDMB_00083 83067 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -62T>C None
M0200727 JFCGFDMB_00083 83073 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -68T>A None
M0200728 JFCGFDMB_00083 83081 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -76G>A None
M0200729 JFCGFDMB_00083 83084 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -79C>T None
M0200730 JFCGFDMB_00083 83130 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -125C>A None
M0200731 JFCGFDMB_00083 83165 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -160C>T None
M0200732 JFCGFDMB_00083 83178 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -173T>C None
M0200733 JFCGFDMB_00083 83185 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -180T>C None
M0200734 JFCGFDMB_00083 83200 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -195A>C None
M0200735 JFCGFDMB_00083 83207 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -202A>G None
M0200736 JFCGFDMB_00083 83209 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -204T>C None
M0200737 JFCGFDMB_00083 83275 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -270T>A None
M0200738 JFCGFDMB_00083 83279 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -274C>T None
M0200739 JFCGFDMB_00083 83397 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -392G>C None
M0200740 JFCGFDMB_00084 84347 3 Gut 0.10 protein_coding synonymous_variant LOW 762C>T His254His
M0200741 JFCGFDMB_00085 84575 3 Gut 0.10 protein_coding missense_variant MODERATE 287C>T Ala96Val
M0200742 JFCGFDMB_00085 84831 3 Gut 0.10 protein_coding missense_variant MODERATE 31G>T Asp11Tyr
M0200743 JFCGFDMB_00083 84899 5 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -1894A>G None
M0200744 JFCGFDMB_00083 84912 4 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -1907A>G None
M0200745 JFCGFDMB_00083 84941 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -1936G>T None
M0200746 JFCGFDMB_00083 84973 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -1968C>T None
M0200747 JFCGFDMB_00086 85261 3 Gut 0.10 protein_coding synonymous_variant LOW 174G>T Arg58Arg
M0200748 JFCGFDMB_00086 85288 4 Gut 0.13 protein_coding synonymous_variant LOW 201G>A Leu67Leu
M0200749 JFCGFDMB_00086 85363 4 Gut 0.13 protein_coding synonymous_variant LOW 276A>G Val92Val
M0200750 JFCGFDMB_00087 85982 3 Gut 0.10 protein_coding synonymous_variant LOW 552A>C Ser184Ser
M0200751 JFCGFDMB_00087 86420 3 Gut 0.10 protein_coding synonymous_variant LOW 990G>A Gly330Gly
M0200752 JFCGFDMB_00087 86509 4 Gut 0.13 protein_coding missense_variant MODERATE 1079T>C Leu360Pro
M0200753 JFCGFDMB_00087 86536 4 Gut 0.13 protein_coding missense_variant MODERATE 1106G>A Arg369Gln
M0200754 JFCGFDMB_00087 86547 4 Gut 0.13 protein_coding synonymous_variant LOW 1117T>C Leu373Leu
M0200755 JFCGFDMB_00087 86837 4 Gut 0.13 protein_coding synonymous_variant LOW 1407T>C Gly469Gly
M0200756 JFCGFDMB_00087 86976 5 Gut 0.17 protein_coding synonymous_variant LOW 1546T>C Leu516Leu
M0200757 JFCGFDMB_00087 87092 5 Gut 0.17 protein_coding synonymous_variant LOW 1662T>A Thr554Thr
M0200758 JFCGFDMB_00087 87170 4 Gut 0.13 protein_coding synonymous_variant LOW 1740C>T Ser580Ser
M0200759 JFCGFDMB_00087 87269 3 Gut 0.10 protein_coding synonymous_variant LOW 1839C>T Ala613Ala
M0200760 JFCGFDMB_00087 87723 7 Gut 0.23 protein_coding synonymous_variant LOW 2293T>C Leu765Leu
M0200761 JFCGFDMB_00089 88999 8 Gut 0.27 protein_coding synonymous_variant LOW 144C>T Asn48Asn
M0200762 JFCGFDMB_00085 89509 8 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4648G>A None
M0200763 JFCGFDMB_00090 89631 8 Gut 0.27 protein_coding missense_variant MODERATE 2261C>A Thr754Asn
M0200764 JFCGFDMB_00090 89639 8 Gut 0.27 protein_coding missense_variant MODERATE 2253T>G His751Gln
M0200765 JFCGFDMB_00090 89650 8 Gut 0.27 protein_coding missense_variant MODERATE 2242G>T Gly748Trp
M0200766 JFCGFDMB_00090 89819 8 Gut 0.27 protein_coding synonymous_variant LOW 2073A>T Leu691Leu
M0200767 JFCGFDMB_00090 89830 8 Gut 0.27 protein_coding missense_variant MODERATE 2062T>G Leu688Val
M0200768 JFCGFDMB_00090 89860 8 Gut 0.27 protein_coding missense_variant MODERATE 2032A>G Thr678Ala
M0200769 JFCGFDMB_00090 89870 8 Gut 0.27 protein_coding synonymous_variant LOW 2022G>A Thr674Thr
M0200770 JFCGFDMB_00090 89914 8 Gut 0.27 protein_coding missense_variant MODERATE 1978A>G Thr660Ala
M0200771 JFCGFDMB_00090 89983 7 Gut 0.23 protein_coding missense_variant MODERATE 1909C>T Pro637Ser
M0200772 JFCGFDMB_00090 90047 5 Gut 0.17 protein_coding synonymous_variant LOW 1845C>T Thr615Thr
M0200773 JFCGFDMB_00090 90203 7 Gut 0.23 protein_coding synonymous_variant LOW 1689A>G Glu563Glu
M0200774 JFCGFDMB_00090 90434 3 Gut 0.10 protein_coding synonymous_variant LOW 1458T>G Thr486Thr
M0200775 JFCGFDMB_00090 90692 3 Gut 0.10 protein_coding synonymous_variant LOW 1200A>G Gly400Gly
M0200776 JFCGFDMB_00090 91322 3 Gut 0.10 protein_coding synonymous_variant LOW 570A>C Gly190Gly
M0200777 JFCGFDMB_00090 91412 3 Gut 0.10 protein_coding synonymous_variant LOW 480A>G Pro160Pro
M0200778 JFCGFDMB_00090 91451 3 Gut 0.10 protein_coding synonymous_variant LOW 441C>T Gly147Gly
M0200779 JFCGFDMB_00090 91508 3 Gut 0.10 protein_coding synonymous_variant LOW 384A>G Leu128Leu
M0200780 JFCGFDMB_00090 91516 3 Gut 0.10 protein_coding synonymous_variant LOW 376A>C Arg126Arg
M0200781 JFCGFDMB_00090 91517 3 Gut 0.10 protein_coding synonymous_variant LOW 375C>T Gly125Gly
M0200782 JFCGFDMB_00090 91520 3 Gut 0.10 protein_coding synonymous_variant LOW 372T>A Ile124Ile
M0200783 JFCGFDMB_00090 91550 3 Gut 0.10 protein_coding synonymous_variant LOW 342C>T Phe114Phe
M0200784 JFCGFDMB_00090 91619 3 Gut 0.10 protein_coding synonymous_variant LOW 273T>C Ser91Ser
M0200785 JFCGFDMB_00090 91718 3 Gut 0.10 protein_coding synonymous_variant LOW 174A>G Thr58Thr
M0200786 JFCGFDMB_00091 91956 3 Gut 0.10 protein_coding synonymous_variant LOW 999T>A Thr333Thr
M0200787 JFCGFDMB_00091 91957 3 Gut 0.10 protein_coding missense_variant MODERATE 998C>G Thr333Ser
M0200788 JFCGFDMB_00091 91958 3 Gut 0.10 protein_coding missense_variant MODERATE 997A>G Thr333Ala
M0200789 JFCGFDMB_00091 92314 3 Gut 0.10 protein_coding missense_variant MODERATE 641T>A Phe214Tyr
M0200790 JFCGFDMB_00091 92448 3 Gut 0.10 protein_coding synonymous_variant LOW 507C>A Val169Val
M0200791 JFCGFDMB_00091 92526 3 Gut 0.10 protein_coding synonymous_variant LOW 429A>T Leu143Leu
M0200792 JFCGFDMB_00091 92608 3 Gut 0.10 protein_coding missense_variant MODERATE 347T>C Phe116Ser
M0200793 JFCGFDMB_00091 92612 3 Gut 0.10 protein_coding missense_variant MODERATE 343G>T Val115Phe
M0200794 JFCGFDMB_00091 92614 3 Gut 0.10 protein_coding missense_variant MODERATE 341C>G Ala114Gly
M0200795 JFCGFDMB_00091 92637 3 Gut 0.10 protein_coding synonymous_variant LOW 318A>G Val106Val
M0200796 JFCGFDMB_00091 92857 3 Gut 0.10 protein_coding missense_variant MODERATE 98A>G Gln33Arg
M0200797 JFCGFDMB_00091 92884 3 Gut 0.10 protein_coding missense_variant MODERATE 71A>G Lys24Arg
M0200798 JFCGFDMB_00091 92886 3 Gut 0.10 protein_coding synonymous_variant LOW 69T>C Gly23Gly
M0200799 JFCGFDMB_00092 93000 3 Gut 0.10 protein_coding synonymous_variant LOW 1182C>T Arg394Arg
M0200800 JFCGFDMB_00092 93039 3 Gut 0.10 protein_coding synonymous_variant LOW 1143T>C Ile381Ile
M0200801 JFCGFDMB_00092 93141 3 Gut 0.10 protein_coding missense_variant MODERATE 1041C>A Asp347Glu
M0200802 JFCGFDMB_00092 93255 3 Gut 0.10 protein_coding synonymous_variant LOW 927C>G Leu309Leu
M0200803 JFCGFDMB_00092 93261 3 Gut 0.10 protein_coding synonymous_variant LOW 921G>A Arg307Arg
M0200804 JFCGFDMB_00092 93357 3 Gut 0.10 protein_coding synonymous_variant LOW 825G>A Lys275Lys
M0200805 JFCGFDMB_00092 93756 3 Gut 0.10 protein_coding synonymous_variant LOW 426G>A Val142Val
M0200806 JFCGFDMB_00092 93834 3 Gut 0.10 protein_coding synonymous_variant LOW 348C>T Ser116Ser
M0200807 JFCGFDMB_00013 12338 3 Gut 0.10 protein_coding missense_variant MODERATE 86C>T Ala29Val
M0200808 JFCGFDMB_00014 13307 4 Gut 0.13 protein_coding synonymous_variant LOW 504C>A Ala168Ala
M0200809 JFCGFDMB_00014 13358 4 Gut 0.13 protein_coding synonymous_variant LOW 555G>A Ser185Ser
M0200810 JFCGFDMB_00014 13409 4 Gut 0.13 protein_coding synonymous_variant LOW 606T>C Ser202Ser
M0200811 JFCGFDMB_00014 13490 3 Gut 0.10 protein_coding synonymous_variant LOW 687C>T Arg229Arg
M0200812 JFCGFDMB_00014 13565 4 Gut 0.13 protein_coding synonymous_variant LOW 762G>C Gly254Gly
M0200813 JFCGFDMB_00014 13571 4 Gut 0.13 protein_coding synonymous_variant LOW 768A>G Ser256Ser
M0200814 JFCGFDMB_00014 13663 4 Gut 0.13 protein_coding missense_variant MODERATE 860C>T Thr287Ile
M0200815 JFCGFDMB_00014 13673 4 Gut 0.13 protein_coding synonymous_variant LOW 870G>A Gly290Gly
M0200816 JFCGFDMB_00014 13683 4 Gut 0.13 protein_coding missense_variant MODERATE 880T>C Tyr294His
M0200817 JFCGFDMB_00014 13706 3 Gut 0.10 protein_coding synonymous_variant LOW 903G>T Gly301Gly
M0200818 JFCGFDMB_00014 13829 4 Gut 0.13 protein_coding synonymous_variant LOW 1026C>T Ser342Ser
M0200819 JFCGFDMB_00014 13898 3 Gut 0.10 protein_coding synonymous_variant LOW 1095G>A Val365Val
M0200820 JFCGFDMB_00014 13906 5 Gut 0.17 protein_coding missense_variant MODERATE 1103C>T Ala368Val
M0200821 JFCGFDMB_00014 13919 5 Gut 0.17 protein_coding synonymous_variant LOW 1116T>C Tyr372Tyr
M0200822 JFCGFDMB_00014 13991 5 Gut 0.17 protein_coding synonymous_variant LOW 1188C>T Ala396Ala
M0200823 JFCGFDMB_00014 14033 5 Gut 0.17 protein_coding synonymous_variant LOW 1230T>G Gly410Gly
M0200824 JFCGFDMB_00014 14043 5 Gut 0.17 protein_coding missense_variant MODERATE 1240T>A Ser414Thr
M0200825 JFCGFDMB_00014 14048 5 Gut 0.17 protein_coding synonymous_variant LOW 1245A>G Ala415Ala
M0200826 JFCGFDMB_00014 14097 5 Gut 0.17 protein_coding missense_variant MODERATE 1294A>G Ser432Gly
M0200827 JFCGFDMB_00014 14108 5 Gut 0.17 protein_coding synonymous_variant LOW 1305G>T Leu435Leu
M0200828 JFCGFDMB_00014 14134 3 Gut 0.10 protein_coding missense_variant MODERATE 1331T>C Val444Ala
M0200829 JFCGFDMB_00014 14183 5 Gut 0.17 protein_coding synonymous_variant LOW 1380C>T Asp460Asp
M0200830 JFCGFDMB_00014 14303 5 Gut 0.17 protein_coding synonymous_variant LOW 1500C>T Ser500Ser
M0200831 JFCGFDMB_00014 14318 5 Gut 0.17 protein_coding synonymous_variant LOW 1515T>G Ser505Ser
M0200832 JFCGFDMB_00014 14360 5 Gut 0.17 protein_coding synonymous_variant LOW 1557T>C Asp519Asp
M0200833 JFCGFDMB_00014 14363 5 Gut 0.17 protein_coding synonymous_variant LOW 1560A>G Thr520Thr
M0200834 JFCGFDMB_00014 14366 5 Gut 0.17 protein_coding synonymous_variant LOW 1563T>G Gly521Gly
M0200835 JFCGFDMB_00014 14450 3 Gut 0.10 protein_coding synonymous_variant LOW 1647C>T Asn549Asn
M0200836 JFCGFDMB_00017 16593 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -204T>C None
M0200837 JFCGFDMB_00017 16653 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -144T>G None
M0200838 JFCGFDMB_00017 16699 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -98T>C None
M0200839 JFCGFDMB_00019 18880 3 Gut 0.10 protein_coding synonymous_variant LOW 258T>C Thr86Thr
M0200840 JFCGFDMB_00019 18938 3 Gut 0.10 protein_coding missense_variant MODERATE 316T>A Ser106Thr
M0200841 JFCGFDMB_00019 18976 3 Gut 0.10 protein_coding synonymous_variant LOW 354G>A Val118Val
M0200842 JFCGFDMB_00020 19652 3 Gut 0.10 protein_coding synonymous_variant LOW 249T>C Gly83Gly
M0200843 JFCGFDMB_00020 19846 3 Gut 0.10 protein_coding missense_variant MODERATE 443A>G His148Arg
M0200844 JFCGFDMB_00020 19895 3 Gut 0.10 protein_coding synonymous_variant LOW 492T>C Ser164Ser
M0200845 JFCGFDMB_00024 21646 3 Gut 0.10 protein_coding synonymous_variant LOW 132A>G Gly44Gly
M0200846 JFCGFDMB_00085 89457 3 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4596T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
JFCGFDMB_00013 VFG042533 CS31A capsule-like antigen 88.9 9.9e-86 1 178 1.0 0.9889 Adherence ClpC prediction
JFCGFDMB_00014 VFG042494 Adhesive fimbriae 95.1 0 15 814 0.9828 1 Adherence cshB porin (usher) prediction
JFCGFDMB_00015 VFG043643 CS31A capsule-like antigen 97.7 1.4e-144 1 263 1.0 1 Adherence unknown protein prediction
JFCGFDMB_00016 VFG034598 Adhesive fimbriae 92.6 1.7e-76 1 163 1.0 1 Adherence fimbrial protein FaeF prediction
JFCGFDMB_00018 VFG043647 CS31A capsule-like antigen 92.5 4.4e-138 1 265 1.0 0.9962 Adherence fimbrial protein prediction
JFCGFDMB_00019 VFG043644 CS31A capsule-like antigen 96.5 9e-141 1 254 1.0 1 Adherence CS31A minor subunit prediction
JFCGFDMB_00020 VFG034602 Adhesive fimbriae 94.9 7.5e-143 1 257 1.0 1 Adherence fimbrial protein FaeJ prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
JFCGFDMB_00123 CCE57598.2|GH23 100 2.92e-138 1 186 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
JFCGFDMB_00014 1.B.11.1.1 93.8 0 5 814 0.9951 0.9975 1 Channels/Pores 1.B β-Barrel Porins 1.B.11 The Outer Membrane Fimbrial Usher Porin (FUP) Family
JFCGFDMB_00090 3.A.7.10.1 99.5 0 1 763 1.0000 7.9479 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
JFCGFDMB_00091 3.A.7.10.1 97.8 9.2e-203 1 356 1.0000 3.7083 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
JFCGFDMB_00092 3.A.7.10.1 99.3 4.6e-243 1 402 1.0000 4.1875 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
JFCGFDMB_00098 9.B.40.1.2 85.9 0 1 722 1.0000 0.9691 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.40 The DotA/TraY (DotA/TraY) Family
JFCGFDMB_00109 3.A.7.10.1 99.4 3.9e-184 1 327 1.0000 3.4063 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
JFCGFDMB_00110 3.A.7.10.1 98.7 6.3e-128 1 230 1.0000 2.3958 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
JFCGFDMB_00111 3.A.7.10.1 100 1.3e-57 1 115 1.0000 1.1979 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
JFCGFDMB_00114 3.A.7.10.1 99 4.6e-56 1 96 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
JFCGFDMB_00115 3.A.7.10.1 99.7 4.2e-222 1 382 1.0000 3.9792 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
JFCGFDMB_00116 3.A.7.10.1 99.6 7.3e-160 1 272 1.0000 2.8333 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family
JFCGFDMB_00117 3.A.7.10.1 99.3 1.8e-86 1 152 1.0000 1.5833 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.7 The Type IV (Conjugal DNA-Protein Transfer or VirB) Secretory Pathway (IVSP) Family