Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1245
  Reference Plasmid   NZ_CP141738.1
  Reference Plasmid Size   90184
  Reference Plasmid GC Content   0.50
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0200847 ONNNBKKO_00008 9410 3 Gut 1.00 protein_coding missense_variant MODERATE 619T>A Cys207Ser
M0200848 ONNNBKKO_00008 9777 3 Gut 1.00 protein_coding synonymous_variant LOW 252C>T Asp84Asp
M0200849 ONNNBKKO_00008 9786 3 Gut 1.00 protein_coding synonymous_variant LOW 243C>T Phe81Phe
M0200850 ONNNBKKO_00008 9792 3 Gut 1.00 protein_coding synonymous_variant LOW 237G>C Leu79Leu
M0200851 ONNNBKKO_00005 10123 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3495A>T None
M0200852 ONNNBKKO_00013 12840 3 Gut 1.00 protein_coding missense_variant MODERATE 290A>C Asp97Ala
M0200853 ONNNBKKO_00013 12896 3 Gut 1.00 protein_coding synonymous_variant LOW 234T>C Asn78Asn
M0200854 ONNNBKKO_00013 12916 3 Gut 1.00 protein_coding missense_variant MODERATE 214T>A Ser72Thr
M0200855 ONNNBKKO_00013 13004 3 Gut 1.00 protein_coding synonymous_variant LOW 126A>G Lys42Lys
M0200856 ONNNBKKO_00014 13887 3 Gut 1.00 protein_coding missense_variant MODERATE 44G>C Gly15Ala
M0200857 ONNNBKKO_00008 13934 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3906A>G None
M0200858 ONNNBKKO_00015 14013 3 Gut 1.00 protein_coding synonymous_variant LOW 5208T>G Leu1736Leu
M0200859 ONNNBKKO_00015 14019 3 Gut 1.00 protein_coding synonymous_variant LOW 5202A>G Glu1734Glu
M0200860 ONNNBKKO_00015 14151 3 Gut 1.00 protein_coding synonymous_variant LOW 5070A>G Glu1690Glu
M0200861 ONNNBKKO_00015 14178 3 Gut 1.00 protein_coding synonymous_variant LOW 5043T>C Asp1681Asp
M0200862 ONNNBKKO_00015 14301 3 Gut 1.00 protein_coding synonymous_variant LOW 4920T>C Gly1640Gly
M0200863 ONNNBKKO_00015 14304 3 Gut 1.00 protein_coding synonymous_variant LOW 4917C>T Asn1639Asn
M0200864 ONNNBKKO_00015 14418 3 Gut 1.00 protein_coding synonymous_variant LOW 4803T>C Ser1601Ser
M0200865 ONNNBKKO_00015 14535 3 Gut 1.00 protein_coding synonymous_variant LOW 4686T>G Arg1562Arg
M0200866 ONNNBKKO_00015 14579 3 Gut 1.00 protein_coding missense_variant MODERATE 4642T>A Ser1548Thr
M0200867 ONNNBKKO_00015 14610 3 Gut 1.00 protein_coding synonymous_variant LOW 4611A>G Lys1537Lys
M0200868 ONNNBKKO_00015 14652 3 Gut 1.00 protein_coding synonymous_variant LOW 4569A>G Pro1523Pro
M0200869 ONNNBKKO_00015 14703 3 Gut 1.00 protein_coding synonymous_variant LOW 4518T>G Leu1506Leu
M0200870 ONNNBKKO_00015 14709 3 Gut 1.00 protein_coding synonymous_variant LOW 4512G>A Ala1504Ala
M0200871 ONNNBKKO_00015 14718 3 Gut 1.00 protein_coding synonymous_variant LOW 4503T>C Leu1501Leu
M0200872 ONNNBKKO_00015 14730 3 Gut 1.00 protein_coding synonymous_variant LOW 4491G>C Gly1497Gly
M0200873 ONNNBKKO_00015 14733 3 Gut 1.00 protein_coding synonymous_variant LOW 4488A>C Ala1496Ala
M0200874 ONNNBKKO_00015 14801 3 Gut 1.00 protein_coding missense_variant MODERATE 4420C>G Pro1474Ala
M0200875 ONNNBKKO_00015 14808 3 Gut 1.00 protein_coding synonymous_variant LOW 4413A>G Glu1471Glu
M0200876 ONNNBKKO_00015 14811 3 Gut 1.00 protein_coding missense_variant MODERATE 4410T>G Phe1470Leu
M0200877 ONNNBKKO_00015 14813 3 Gut 1.00 protein_coding missense_variant MODERATE 4408T>C Phe1470Leu
M0200878 ONNNBKKO_00015 14826 3 Gut 1.00 protein_coding synonymous_variant LOW 4395A>T Thr1465Thr
M0200879 ONNNBKKO_00015 14940 3 Gut 1.00 protein_coding synonymous_variant LOW 4281A>C Ala1427Ala
M0200880 ONNNBKKO_00015 15070 3 Gut 1.00 protein_coding missense_variant MODERATE 4151A>G His1384Arg
M0200881 ONNNBKKO_00015 15293 3 Gut 1.00 protein_coding missense_variant MODERATE 3928G>C Glu1310Gln
M0200882 ONNNBKKO_00015 15346 3 Gut 1.00 protein_coding missense_variant MODERATE 3875G>A Ser1292Asn
M0200883 ONNNBKKO_00015 15363 3 Gut 1.00 protein_coding synonymous_variant LOW 3858C>A Ala1286Ala
M0200884 ONNNBKKO_00015 15366 3 Gut 1.00 protein_coding synonymous_variant LOW 3855T>C Asp1285Asp
M0200885 ONNNBKKO_00015 15370 3 Gut 1.00 protein_coding missense_variant MODERATE 3851C>G Pro1284Arg
M0200886 ONNNBKKO_00015 15372 3 Gut 1.00 protein_coding synonymous_variant LOW 3849C>T Asn1283Asn
M0200887 ONNNBKKO_00015 15374 3 Gut 1.00 protein_coding missense_variant MODERATE 3847A>C Asn1283His
M0200888 ONNNBKKO_00015 15375 3 Gut 1.00 protein_coding missense_variant MODERATE 3846T>A Asn1282Lys
M0200889 ONNNBKKO_00015 15376 3 Gut 1.00 protein_coding missense_variant MODERATE 3845A>C Asn1282Thr
M0200890 ONNNBKKO_00015 15402 3 Gut 1.00 protein_coding synonymous_variant LOW 3819A>G Glu1273Glu
M0200891 ONNNBKKO_00015 15405 3 Gut 1.00 protein_coding synonymous_variant LOW 3816A>G Gly1272Gly
M0200892 ONNNBKKO_00015 15531 3 Gut 1.00 protein_coding synonymous_variant LOW 3690T>C Val1230Val
M0200893 ONNNBKKO_00015 15618 3 Gut 1.00 protein_coding synonymous_variant LOW 3603C>T Phe1201Phe
M0200894 ONNNBKKO_00015 15729 3 Gut 1.00 protein_coding synonymous_variant LOW 3492C>A Pro1164Pro
M0200895 ONNNBKKO_00015 15732 3 Gut 1.00 protein_coding synonymous_variant LOW 3489T>G Val1163Val
M0200896 ONNNBKKO_00015 15850 3 Gut 1.00 protein_coding missense_variant MODERATE 3371T>C Val1124Ala
M0200897 ONNNBKKO_00015 15930 3 Gut 1.00 protein_coding synonymous_variant LOW 3291C>T Ser1097Ser
M0200898 ONNNBKKO_00015 15936 3 Gut 1.00 protein_coding synonymous_variant LOW 3285A>G Val1095Val
M0200899 ONNNBKKO_00015 15939 3 Gut 1.00 protein_coding synonymous_variant LOW 3282T>G Ala1094Ala
M0200900 ONNNBKKO_00015 16128 3 Gut 1.00 protein_coding synonymous_variant LOW 3093G>T Gly1031Gly
M0200901 ONNNBKKO_00015 16137 3 Gut 1.00 protein_coding synonymous_variant LOW 3084C>T Arg1028Arg
M0200902 ONNNBKKO_00015 16149 3 Gut 1.00 protein_coding synonymous_variant LOW 3072T>G Gly1024Gly
M0200903 ONNNBKKO_00015 16512 3 Gut 1.00 protein_coding missense_variant MODERATE 2709C>A Asp903Glu
M0200904 ONNNBKKO_00015 16515 3 Gut 1.00 protein_coding synonymous_variant LOW 2706C>T Ile902Ile
M0200905 ONNNBKKO_00015 16516 3 Gut 1.00 protein_coding missense_variant MODERATE 2705T>C Ile902Thr
M0200906 ONNNBKKO_00015 16773 3 Gut 1.00 protein_coding synonymous_variant LOW 2448T>A Ser816Ser
M0200907 ONNNBKKO_00015 16929 3 Gut 1.00 protein_coding synonymous_variant LOW 2292A>G Pro764Pro
M0200908 ONNNBKKO_00015 16938 3 Gut 1.00 protein_coding synonymous_variant LOW 2283C>T Ser761Ser
M0200909 ONNNBKKO_00015 16939 3 Gut 1.00 protein_coding missense_variant MODERATE 2282G>C Ser761Thr
M0200910 ONNNBKKO_00015 16940 3 Gut 1.00 protein_coding missense_variant MODERATE 2281A>G Ser761Gly
M0200911 ONNNBKKO_00015 17070 3 Gut 1.00 protein_coding synonymous_variant LOW 2151A>T Arg717Arg
M0200912 ONNNBKKO_00015 17208 3 Gut 1.00 protein_coding synonymous_variant LOW 2013C>A Ile671Ile
M0200913 ONNNBKKO_00015 17211 3 Gut 1.00 protein_coding synonymous_variant LOW 2010T>G Val670Val
M0200914 ONNNBKKO_00015 17268 3 Gut 1.00 protein_coding synonymous_variant LOW 1953T>A Arg651Arg
M0200915 ONNNBKKO_00015 17309 3 Gut 1.00 protein_coding missense_variant MODERATE 1912A>T Arg638Trp
M0200916 ONNNBKKO_00015 17319 3 Gut 1.00 protein_coding synonymous_variant LOW 1902T>G Leu634Leu
M0200917 ONNNBKKO_00015 17325 3 Gut 1.00 protein_coding synonymous_variant LOW 1896T>C Thr632Thr
M0200918 ONNNBKKO_00015 17344 3 Gut 1.00 protein_coding missense_variant MODERATE 1877T>A Leu626His
M0200919 ONNNBKKO_00015 17583 3 Gut 1.00 protein_coding synonymous_variant LOW 1638A>G Ala546Ala
M0200920 ONNNBKKO_00015 17777 3 Gut 1.00 protein_coding synonymous_variant LOW 1444T>C Leu482Leu
M0200921 ONNNBKKO_00015 18072 3 Gut 1.00 protein_coding synonymous_variant LOW 1149G>A Gly383Gly
M0200922 ONNNBKKO_00015 18075 3 Gut 1.00 protein_coding synonymous_variant LOW 1146C>A Ser382Ser
M0200923 ONNNBKKO_00015 18078 3 Gut 1.00 protein_coding synonymous_variant LOW 1143G>A Thr381Thr
M0200924 ONNNBKKO_00015 18099 3 Gut 1.00 protein_coding synonymous_variant LOW 1122T>C Asp374Asp
M0200925 ONNNBKKO_00015 18146 3 Gut 1.00 protein_coding missense_variant MODERATE 1075A>G Thr359Ala
M0200926 ONNNBKKO_00015 18477 3 Gut 1.00 protein_coding synonymous_variant LOW 744T>C Asp248Asp
M0200927 ONNNBKKO_00015 18480 3 Gut 1.00 protein_coding synonymous_variant LOW 741A>G Glu247Glu
M0200928 ONNNBKKO_00015 18501 3 Gut 1.00 protein_coding synonymous_variant LOW 720A>T Ala240Ala
M0200929 ONNNBKKO_00015 18503 3 Gut 1.00 protein_coding missense_variant MODERATE 718G>A Ala240Thr
M0200930 ONNNBKKO_00015 18546 3 Gut 1.00 protein_coding synonymous_variant LOW 675G>A Glu225Glu
M0200931 ONNNBKKO_00015 18576 3 Gut 1.00 protein_coding synonymous_variant LOW 645C>G Thr215Thr
M0200932 ONNNBKKO_00015 18997 3 Gut 1.00 protein_coding missense_variant MODERATE 224G>A Arg75Lys
M0200933 ONNNBKKO_00015 18999 3 Gut 1.00 protein_coding synonymous_variant LOW 222C>T Asn74Asn
M0200934 ONNNBKKO_00016 19583 3 Gut 1.00 protein_coding synonymous_variant LOW 1827A>G Glu609Glu
M0200935 ONNNBKKO_00016 19589 3 Gut 1.00 protein_coding synonymous_variant LOW 1821G>C Val607Val
M0200936 ONNNBKKO_00016 19652 3 Gut 1.00 protein_coding synonymous_variant LOW 1758C>T Ser586Ser
M0200937 ONNNBKKO_00016 19700 3 Gut 1.00 protein_coding synonymous_variant LOW 1710T>G Pro570Pro
M0200938 ONNNBKKO_00016 19703 3 Gut 1.00 protein_coding synonymous_variant LOW 1707C>T Ala569Ala
M0200939 ONNNBKKO_00016 19706 3 Gut 1.00 protein_coding synonymous_variant LOW 1704T>C Val568Val
M0200940 ONNNBKKO_00016 19715 3 Gut 1.00 protein_coding synonymous_variant LOW 1695T>A Arg565Arg
M0200941 ONNNBKKO_00016 19720 3 Gut 1.00 protein_coding missense_variant MODERATE 1690G>A Ala564Thr
M0200942 ONNNBKKO_00016 19733 3 Gut 1.00 protein_coding synonymous_variant LOW 1677A>T Ser559Ser
M0200943 ONNNBKKO_00016 19783 3 Gut 1.00 protein_coding synonymous_variant LOW 1627T>C Leu543Leu
M0200944 ONNNBKKO_00016 20750 3 Gut 1.00 protein_coding synonymous_variant LOW 660T>C Asp220Asp
M0200945 ONNNBKKO_00016 21137 3 Gut 1.00 protein_coding synonymous_variant LOW 273T>C Asn91Asn
M0200946 ONNNBKKO_00015 21428 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2208T>C None
M0200947 ONNNBKKO_00015 21465 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -2245G>A None
M0200948 ONNNBKKO_00017 22070 3 Gut 1.00 protein_coding synonymous_variant LOW 369A>G Glu123Glu
M0200949 ONNNBKKO_00019 23249 3 Gut 1.00 protein_coding synonymous_variant LOW 2517G>A Gly839Gly
M0200950 ONNNBKKO_00019 23258 3 Gut 1.00 protein_coding synonymous_variant LOW 2508T>C Asp836Asp
M0200951 ONNNBKKO_00019 23285 3 Gut 1.00 protein_coding synonymous_variant LOW 2481G>T Gly827Gly
M0200952 ONNNBKKO_00019 23315 3 Gut 1.00 protein_coding synonymous_variant LOW 2451C>T Ile817Ile
M0200953 ONNNBKKO_00019 23318 3 Gut 1.00 protein_coding synonymous_variant LOW 2448C>T Asp816Asp
M0200954 ONNNBKKO_00019 23321 3 Gut 1.00 protein_coding synonymous_variant LOW 2445G>C Gly815Gly
M0200955 ONNNBKKO_00019 23372 3 Gut 1.00 protein_coding synonymous_variant LOW 2394T>G Val798Val
M0200956 ONNNBKKO_00019 23390 3 Gut 1.00 protein_coding synonymous_variant LOW 2376T>A Ala792Ala
M0200957 ONNNBKKO_00019 23417 3 Gut 1.00 protein_coding synonymous_variant LOW 2349A>G Ser783Ser
M0200958 ONNNBKKO_00019 23426 3 Gut 1.00 protein_coding synonymous_variant LOW 2340C>T Asn780Asn
M0200959 ONNNBKKO_00019 24279 3 Gut 1.00 protein_coding missense_variant MODERATE 1487T>C Val496Ala
M0200960 ONNNBKKO_00019 25175 3 Gut 1.00 protein_coding synonymous_variant LOW 591A>G Leu197Leu
M0200961 ONNNBKKO_00019 25181 3 Gut 1.00 protein_coding synonymous_variant LOW 585T>C Ser195Ser
M0200962 ONNNBKKO_00019 25392 3 Gut 1.00 protein_coding missense_variant MODERATE 374A>G Asn125Ser
M0200963 ONNNBKKO_00019 25731 3 Gut 1.00 protein_coding missense_variant MODERATE 35T>G Leu12Trp
M0200964 ONNNBKKO_00020 26233 3 Gut 1.00 protein_coding synonymous_variant LOW 903T>C Ser301Ser
M0200965 ONNNBKKO_00020 26380 3 Gut 1.00 protein_coding synonymous_variant LOW 756T>C Pro252Pro
M0200966 ONNNBKKO_00020 26875 3 Gut 1.00 protein_coding synonymous_variant LOW 261T>C Ile87Ile
M0200967 ONNNBKKO_00021 27196 3 Gut 1.00 protein_coding missense_variant MODERATE 242A>G Gln81Arg
M0200968 ONNNBKKO_00022 27445 3 Gut 1.00 protein_coding synonymous_variant LOW 528A>G Gly176Gly
M0200969 ONNNBKKO_00022 27580 3 Gut 1.00 protein_coding synonymous_variant LOW 393T>G Pro131Pro
M0200970 ONNNBKKO_00022 27640 3 Gut 1.00 protein_coding synonymous_variant LOW 333A>G Gly111Gly
M0200971 ONNNBKKO_00024 28696 3 Gut 1.00 protein_coding missense_variant MODERATE 14G>A Cys5Tyr
M0200972 ONNNBKKO_00025 28764 3 Gut 1.00 protein_coding synonymous_variant LOW 705A>G Gln235Gln
M0200973 ONNNBKKO_00025 28794 3 Gut 1.00 protein_coding synonymous_variant LOW 675T>C Gly225Gly
M0200974 ONNNBKKO_00025 28809 3 Gut 1.00 protein_coding synonymous_variant LOW 660T>C Arg220Arg
M0200975 ONNNBKKO_00025 28895 3 Gut 1.00 protein_coding synonymous_variant LOW 574A>C Arg192Arg
M0200976 ONNNBKKO_00026 29568 3 Gut 1.00 protein_coding missense_variant MODERATE 151T>C Phe51Leu
M0200977 ONNNBKKO_00026 29569 3 Gut 1.00 protein_coding synonymous_variant LOW 150T>C Ile50Ile
M0200978 ONNNBKKO_00026 29584 3 Gut 1.00 protein_coding synonymous_variant LOW 135T>A Ala45Ala
M0200979 ONNNBKKO_00026 29590 3 Gut 1.00 protein_coding missense_variant MODERATE 129A>G Ile43Met
M0200980 ONNNBKKO_00026 29594 3 Gut 1.00 protein_coding missense_variant MODERATE 125A>G Glu42Gly
M0200981 ONNNBKKO_00026 29596 3 Gut 1.00 protein_coding synonymous_variant LOW 123T>C Gly41Gly
M0200982 ONNNBKKO_00026 29597 3 Gut 1.00 protein_coding missense_variant MODERATE 122G>A Gly41Asp
M0200983 ONNNBKKO_00026 29602 3 Gut 1.00 protein_coding synonymous_variant LOW 117T>G Thr39Thr
M0200984 ONNNBKKO_00019 29724 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3959A>G None
M0200985 ONNNBKKO_00019 29740 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3975G>T None
M0200986 ONNNBKKO_00027 29805 3 Gut 1.00 protein_coding synonymous_variant LOW 1749T>C Gly583Gly
M0200987 ONNNBKKO_00027 29952 3 Gut 1.00 protein_coding synonymous_variant LOW 1602A>T Gly534Gly
M0200988 ONNNBKKO_00027 30009 3 Gut 1.00 protein_coding synonymous_variant LOW 1545T>C Ser515Ser
M0200989 ONNNBKKO_00027 30027 3 Gut 1.00 protein_coding synonymous_variant LOW 1527C>T Cys509Cys
M0200990 ONNNBKKO_00027 30183 3 Gut 1.00 protein_coding synonymous_variant LOW 1371T>A Ala457Ala
M0200991 ONNNBKKO_00027 30314 3 Gut 1.00 protein_coding missense_variant MODERATE 1240A>C Lys414Gln
M0200992 ONNNBKKO_00027 30694 3 Gut 1.00 protein_coding missense_variant MODERATE 860T>C Leu287Ser
M0200993 ONNNBKKO_00027 31168 3 Gut 1.00 protein_coding missense_variant MODERATE 386A>G Glu129Gly
M0200994 ONNNBKKO_00027 31391 3 Gut 1.00 protein_coding missense_variant MODERATE 163G>A Asp55Asn
M0200995 ONNNBKKO_00027 31396 3 Gut 1.00 protein_coding missense_variant MODERATE 158A>G Asp53Gly
M0200996 ONNNBKKO_00028 31563 3 Gut 1.00 protein_coding missense_variant MODERATE 626G>A Gly209Asp
M0200997 ONNNBKKO_00028 31941 3 Gut 1.00 protein_coding missense_variant MODERATE 248T>C Leu83Ser
M0200998 ONNNBKKO_00028 32097 3 Gut 1.00 protein_coding missense_variant MODERATE 92A>G His31Arg
M0200999 ONNNBKKO_00029 32287 3 Gut 1.00 protein_coding synonymous_variant LOW 903A>G Val301Val
M0201000 ONNNBKKO_00031 33917 3 Gut 1.00 protein_coding missense_variant MODERATE 285A>C Gln95His
M0201001 ONNNBKKO_00032 34762 3 Gut 1.00 protein_coding synonymous_variant LOW 2064T>C Asn688Asn
M0201002 ONNNBKKO_00029 37262 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4073C>T None
M0201003 ONNNBKKO_00038 39010 3 Gut 1.00 protein_coding synonymous_variant LOW 1155G>A Glu385Glu
M0201004 ONNNBKKO_00038 39013 3 Gut 1.00 protein_coding synonymous_variant LOW 1152T>C Ala384Ala
M0201005 ONNNBKKO_00038 39061 3 Gut 1.00 protein_coding synonymous_variant LOW 1104T>C Gly368Gly
M0201006 ONNNBKKO_00038 39076 3 Gut 1.00 protein_coding missense_variant MODERATE 1089A>G Ile363Met
M0201007 ONNNBKKO_00038 39094 3 Gut 1.00 protein_coding synonymous_variant LOW 1071C>T Ala357Ala
M0201008 ONNNBKKO_00038 39109 3 Gut 1.00 protein_coding synonymous_variant LOW 1056T>A Thr352Thr
M0201009 ONNNBKKO_00038 39112 3 Gut 1.00 protein_coding synonymous_variant LOW 1053T>C Ala351Ala
M0201010 ONNNBKKO_00038 39115 3 Gut 1.00 protein_coding synonymous_variant LOW 1050G>T Gly350Gly
M0201011 ONNNBKKO_00038 39142 3 Gut 1.00 protein_coding synonymous_variant LOW 1023T>C Arg341Arg
M0201012 ONNNBKKO_00038 39283 3 Gut 1.00 protein_coding synonymous_variant LOW 882C>T Thr294Thr
M0201013 ONNNBKKO_00038 39293 3 Gut 1.00 protein_coding missense_variant MODERATE 872G>A Gly291Asp
M0201014 ONNNBKKO_00038 39304 3 Gut 1.00 protein_coding synonymous_variant LOW 861C>T Ser287Ser
M0201015 ONNNBKKO_00038 39534 3 Gut 1.00 protein_coding synonymous_variant LOW 631T>C Leu211Leu
M0201016 ONNNBKKO_00038 40087 3 Gut 1.00 protein_coding synonymous_variant LOW 78T>G Ala26Ala
M0201017 ONNNBKKO_00038 40098 3 Gut 1.00 protein_coding missense_variant MODERATE 67G>A Ala23Thr
M0201018 ONNNBKKO_00039 40372 3 Gut 1.00 protein_coding missense_variant MODERATE 521A>C Tyr174Ser
M0201019 ONNNBKKO_00039 40539 3 Gut 1.00 protein_coding synonymous_variant LOW 354T>C Val118Val
M0201020 ONNNBKKO_00039 40756 3 Gut 1.00 protein_coding missense_variant MODERATE 137T>C Ile46Thr
M0201021 ONNNBKKO_00040 41248 3 Gut 1.00 protein_coding synonymous_variant LOW 198T>C Asp66Asp
M0201022 ONNNBKKO_00041 41557 3 Gut 1.00 protein_coding synonymous_variant LOW 222A>T Arg74Arg
M0201023 ONNNBKKO_00042 42126 3 Gut 1.00 protein_coding synonymous_variant LOW 27G>T Gly9Gly
M0201024 ONNNBKKO_00044 42702 3 Gut 1.00 protein_coding missense_variant MODERATE 667G>A Val223Met
M0201025 ONNNBKKO_00045 43763 3 Gut 1.00 protein_coding missense_variant MODERATE 176T>C Phe59Ser
M0201026 ONNNBKKO_00038 44031 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -3867C>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
ONNNBKKO_00074 VFG000908 Alpha-Hemolysin 98.1 2.9e-253 1 478 1.0 1 Exotoxin Hemolysin D experiment
ONNNBKKO_00075 VFG000907 Alpha-Hemolysin 98.3 0 1 707 1.0 1 Exotoxin Hemolysin B experiment
ONNNBKKO_00076 VFG000906 Alpha-Hemolysin 97.6 0 1 1024 1.0 1 Exotoxin Hemolysin A experiment
ONNNBKKO_00077 VFG000905 Alpha-Hemolysin 97.1 5.9e-100 1 170 1.0 1 Exotoxin Hemolysin C experiment
ONNNBKKO_00074 VFG012472 -Hemolysin 98.3 7.4e-253 1 478 1.0 1 Exotoxin Hemolysin D prediction
ONNNBKKO_00075 VFG012478 -Hemolysin 98.6 0 1 707 1.0 1 Exotoxin Hemolysin B prediction
ONNNBKKO_00076 VFG000906 Alpha-Hemolysin 97.6 0 1 1024 1.0 1 Exotoxin Hemolysin A prediction
ONNNBKKO_00077 VFG012491 -Hemolysin 98.2 4e-100 1 170 1.0 1 Exotoxin Hemolysin C prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
ONNNBKKO_00076 PHI:7837 hlyA 97.8 0 1 1024 1.0000 1.0000 rodents neonatal meningitis pore forming toxin alpha-hemolysin unaffected pathogenicity






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
ONNNBKKO_00046 QAZ75040.1|GH23 100 4.96e-124 1 169 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
ONNNBKKO_00074 8.A.1.3.1 96.9 1.8e-249 1 478 1.0000 1.0000 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.1 The Membrane Fusion Protein (MFP) Family
ONNNBKKO_00075 3.A.1.109.1 97.6 0 1 707 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ONNNBKKO_00076 1.C.11.1.3 97.8 0 1 1024 1.0000 1.0000 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.11 The Pore-forming RTX Toxin (RTX-toxin) Family