Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1253
  Reference Plasmid   NZ_CP143942.1
  Reference Plasmid Size   103598
  Reference Plasmid GC Content   0.43
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0202071 KMFIFAHI_00130 102282 5 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -181T>C None
M0202072 KMFIFAHI_00130 102309 6 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -154T>C None
M0202073 KMFIFAHI_00130 102311 6 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -152C>T None
M0202074 KMFIFAHI_00009 6940 5 Gut 0.07 protein_coding missense_variant MODERATE 681G>A Met227Ile
M0202075 KMFIFAHI_00009 7462 5 Gut 0.07 protein_coding synonymous_variant LOW 159C>T Ser53Ser
M0202076 KMFIFAHI_00011 8103 5 Gut 0.07 protein_coding missense_variant MODERATE 1198G>A Ala400Thr
M0202077 KMFIFAHI_00031 25724 9 Gut 0.12 protein_coding synonymous_variant LOW 507T>A Gly169Gly
M0202078 KMFIFAHI_00071 60422 6 Gut 0.08 protein_coding synonymous_variant LOW 708C>T Tyr236Tyr
M0202079 KMFIFAHI_00069 63420 5 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4290C>T None
M0202080 KMFIFAHI_00069 63427 5 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4297T>G None
M0202081 KMFIFAHI_00069 63432 5 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4302A>C None
M0202082 KMFIFAHI_00074 63492 4 Gut 0.05 protein_coding missense_variant MODERATE 993G>C Glu331Asp
M0202083 KMFIFAHI_00074 63495 5 Gut 0.07 protein_coding synonymous_variant LOW 990A>G Glu330Glu
M0202084 KMFIFAHI_00074 63808 4 Gut 0.05 protein_coding missense_variant MODERATE 677A>G Asn226Ser
M0202085 KMFIFAHI_00074 64010 4 Gut 0.05 protein_coding missense_variant MODERATE 475G>A Val159Ile
M0202086 KMFIFAHI_00074 64153 4 Gut 0.05 protein_coding missense_variant MODERATE 332C>G Thr111Ser
M0202087 KMFIFAHI_00074 64157 4 Gut 0.05 protein_coding missense_variant MODERATE 328C>A Leu110Ile
M0202088 KMFIFAHI_00076 65965 4 Gut 0.05 protein_coding synonymous_variant LOW 171C>T Pro57Pro
M0202089 KMFIFAHI_00076 66034 5 Gut 0.07 protein_coding synonymous_variant LOW 102A>T Arg34Arg
M0202090 KMFIFAHI_00076 66111 5 Gut 0.07 protein_coding missense_variant MODERATE 25T>A Ser9Thr
M0202091 KMFIFAHI_00076 66112 4 Gut 0.05 protein_coding synonymous_variant LOW 24C>T Ala8Ala
M0202092 KMFIFAHI_00077 66785 4 Gut 0.05 protein_coding missense_variant MODERATE 335G>A Arg112Lys
M0202093 KMFIFAHI_00077 66807 4 Gut 0.05 protein_coding synonymous_variant LOW 357C>T Ser119Ser
M0202094 KMFIFAHI_00077 66894 5 Gut 0.07 protein_coding synonymous_variant LOW 444C>A Val148Val
M0202095 KMFIFAHI_00078 67850 5 Gut 0.07 protein_coding synonymous_variant LOW 183C>T Asp61Asp
M0202096 KMFIFAHI_00078 67894 4 Gut 0.05 protein_coding missense_variant MODERATE 227A>G Asp76Gly
M0202097 KMFIFAHI_00078 67895 4 Gut 0.05 protein_coding missense_variant MODERATE 228T>G Asp76Glu
M0202098 KMFIFAHI_00078 67910 6 Gut 0.08 protein_coding synonymous_variant LOW 243T>C Leu81Leu
M0202099 KMFIFAHI_00078 67972 4 Gut 0.05 protein_coding missense_variant MODERATE 305A>G Glu102Gly
M0202100 KMFIFAHI_00078 68015 5 Gut 0.07 protein_coding synonymous_variant LOW 348G>T Val116Val
M0202101 KMFIFAHI_00078 68017 5 Gut 0.07 protein_coding missense_variant MODERATE 350A>G Gln117Arg
M0202102 KMFIFAHI_00078 68021 4 Gut 0.05 protein_coding synonymous_variant LOW 354G>A Ser118Ser
M0202103 KMFIFAHI_00078 68054 5 Gut 0.07 protein_coding synonymous_variant LOW 387T>C Pro129Pro
M0202104 KMFIFAHI_00078 68080 5 Gut 0.07 protein_coding missense_variant MODERATE 413A>G Glu138Gly
M0202105 KMFIFAHI_00078 68129 5 Gut 0.07 protein_coding synonymous_variant LOW 462G>A Leu154Leu
M0202106 KMFIFAHI_00078 68189 4 Gut 0.05 protein_coding synonymous_variant LOW 522C>T Asp174Asp
M0202107 KMFIFAHI_00078 68266 4 Gut 0.05 protein_coding missense_variant MODERATE 599A>G Asp200Gly
M0202108 KMFIFAHI_00078 68396 4 Gut 0.05 protein_coding synonymous_variant LOW 729A>C Ser243Ser
M0202109 KMFIFAHI_00078 68431 5 Gut 0.07 protein_coding missense_variant MODERATE 764G>A Gly255Asp
M0202110 KMFIFAHI_00078 68455 5 Gut 0.07 protein_coding missense_variant MODERATE 788T>C Val263Ala
M0202111 KMFIFAHI_00078 68504 5 Gut 0.07 protein_coding synonymous_variant LOW 837T>A Val279Val
M0202112 KMFIFAHI_00078 68509 4 Gut 0.05 protein_coding missense_variant MODERATE 842C>T Ser281Phe
M0202113 KMFIFAHI_00078 68571 4 Gut 0.05 protein_coding missense_variant MODERATE 904A>G Met302Val
M0202114 KMFIFAHI_00074 68591 4 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4107A>G None
M0202115 KMFIFAHI_00074 68619 4 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4135C>T None
M0202116 KMFIFAHI_00079 68675 4 Gut 0.05 protein_coding synonymous_variant LOW 24T>A Ala8Ala
M0202117 KMFIFAHI_00079 68729 4 Gut 0.05 protein_coding synonymous_variant LOW 78G>A Arg26Arg
M0202118 KMFIFAHI_00079 68864 4 Gut 0.05 protein_coding synonymous_variant LOW 213A>C Val71Val
M0202119 KMFIFAHI_00079 68873 4 Gut 0.05 protein_coding missense_variant MODERATE 222T>A Asp74Glu
M0202120 KMFIFAHI_00079 68934 4 Gut 0.05 protein_coding missense_variant MODERATE 283A>G Ser95Gly
M0202121 KMFIFAHI_00079 68939 4 Gut 0.05 protein_coding synonymous_variant LOW 288C>T Asp96Asp
M0202122 KMFIFAHI_00079 68961 4 Gut 0.05 protein_coding missense_variant MODERATE 310G>C Ala104Pro
M0202123 KMFIFAHI_00079 68978 4 Gut 0.05 protein_coding synonymous_variant LOW 327A>G Ala109Ala
M0202124 KMFIFAHI_00079 69083 4 Gut 0.05 protein_coding synonymous_variant LOW 432A>T Ser144Ser
M0202125 KMFIFAHI_00079 69385 4 Gut 0.05 protein_coding missense_variant MODERATE 734T>C Phe245Ser
M0202126 KMFIFAHI_00079 69688 4 Gut 0.05 protein_coding missense_variant MODERATE 1037T>A Val346Glu
M0202127 KMFIFAHI_00080 69835 4 Gut 0.05 protein_coding synonymous_variant LOW 30A>G Ala10Ala
M0202128 KMFIFAHI_00082 70340 4 Gut 0.05 protein_coding missense_variant MODERATE 181G>A Ala61Thr
M0202129 KMFIFAHI_00082 70346 6 Gut 0.08 protein_coding missense_variant MODERATE 175T>G Ser59Ala
M0202130 KMFIFAHI_00082 70449 5 Gut 0.07 protein_coding synonymous_variant LOW 72C>T Val24Val
M0202131 KMFIFAHI_00082 70458 5 Gut 0.07 protein_coding synonymous_variant LOW 63C>A Ile21Ile
M0202132 KMFIFAHI_00083 70754 4 Gut 0.05 protein_coding missense_variant MODERATE 233A>G Asp78Gly
M0202133 KMFIFAHI_00083 70825 4 Gut 0.05 protein_coding synonymous_variant LOW 162T>C Ser54Ser
M0202134 KMFIFAHI_00083 70843 6 Gut 0.08 protein_coding synonymous_variant LOW 144T>C Thr48Thr
M0202135 KMFIFAHI_00090 75279 3 Gut 0.04 protein_coding synonymous_variant LOW 351C>T Val117Val
M0202136 KMFIFAHI_00094 77854 4 Gut 0.05 protein_coding missense_variant MODERATE 64T>C Trp22Arg
M0202137 KMFIFAHI_00124 102021 4 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4981C>A None
M0202138 KMFIFAHI_00130 102056 5 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -407A>C None
M0202139 KMFIFAHI_00130 102064 4 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -399A>G None
M0202140 KMFIFAHI_00130 102085 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -378G>A None
M0202141 KMFIFAHI_00130 102120 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -343G>A None
M0202142 KMFIFAHI_00026 20922 3 Gut 0.04 protein_coding synonymous_variant LOW 252T>C Asp84Asp
M0202143 KMFIFAHI_00124 99098 8 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -2058G>A None
M0202144 KMFIFAHI_00124 99125 8 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -2085G>A None
M0202145 KMFIFAHI_00124 99127 8 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -2087A>G None
M0202146 KMFIFAHI_00014 11244 4 Gut 0.05 protein_coding missense_variant MODERATE 644A>G His215Arg
M0202147 KMFIFAHI_00019 15010 3 Gut 0.04 protein_coding synonymous_variant LOW 2052A>G Pro684Pro
M0202148 KMFIFAHI_00021 17493 3 Gut 0.04 protein_coding synonymous_variant LOW 234T>C Ala78Ala
M0202149 KMFIFAHI_00019 21796 5 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4735G>A None
M0202150 KMFIFAHI_00019 21799 6 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4738A>G None
M0202151 KMFIFAHI_00019 21824 8 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4763C>T None
M0202152 KMFIFAHI_00019 21825 6 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4764C>T None
M0202153 KMFIFAHI_00027 21925 3 Gut 0.04 protein_coding missense_variant MODERATE 424A>G Ile142Val
M0202154 KMFIFAHI_00027 21944 4 Gut 0.05 protein_coding synonymous_variant LOW 405A>C Ala135Ala
M0202155 KMFIFAHI_00027 21950 3 Gut 0.04 protein_coding synonymous_variant LOW 399C>T Asn133Asn
M0202156 KMFIFAHI_00027 21968 4 Gut 0.05 protein_coding synonymous_variant LOW 381T>G Thr127Thr
M0202157 KMFIFAHI_00028 22932 6 Gut 0.08 protein_coding synonymous_variant LOW 120G>T Gly40Gly
M0202158 KMFIFAHI_00028 22982 4 Gut 0.05 protein_coding synonymous_variant LOW 70C>T Leu24Leu
M0202159 KMFIFAHI_00028 22983 4 Gut 0.05 protein_coding synonymous_variant LOW 69G>A Thr23Thr
M0202160 KMFIFAHI_00028 22986 4 Gut 0.05 protein_coding synonymous_variant LOW 66T>C Ser22Ser
M0202161 KMFIFAHI_00028 22992 4 Gut 0.05 protein_coding synonymous_variant LOW 60G>A Gly20Gly
M0202162 KMFIFAHI_00030 24365 3 Gut 0.04 protein_coding synonymous_variant LOW 576G>A Leu192Leu
M0202163 KMFIFAHI_00030 24384 3 Gut 0.04 protein_coding missense_variant MODERATE 595C>T Arg199Trp
M0202164 KMFIFAHI_00030 24393 3 Gut 0.04 protein_coding missense_variant MODERATE 604A>G Asn202Asp
M0202165 KMFIFAHI_00030 24417 3 Gut 0.04 protein_coding synonymous_variant LOW 628T>C Leu210Leu
M0202166 KMFIFAHI_00030 24443 3 Gut 0.04 protein_coding synonymous_variant LOW 654A>G Leu218Leu
M0202167 KMFIFAHI_00009 6922 3 Gut 0.04 protein_coding synonymous_variant LOW 699A>G Glu233Glu
M0202168 KMFIFAHI_00009 6949 3 Gut 0.04 protein_coding synonymous_variant LOW 672G>T Leu224Leu
M0202169 KMFIFAHI_00009 7348 3 Gut 0.04 protein_coding synonymous_variant LOW 273A>G Pro91Pro
M0202170 KMFIFAHI_00011 7978 3 Gut 0.04 protein_coding synonymous_variant LOW 1323A>G Thr441Thr
M0202171 KMFIFAHI_00011 8026 3 Gut 0.04 protein_coding synonymous_variant LOW 1275T>C Thr425Thr
M0202172 KMFIFAHI_00011 9022 3 Gut 0.04 protein_coding missense_variant MODERATE 279T>G Asp93Glu
M0202173 KMFIFAHI_00012 10067 3 Gut 0.04 protein_coding missense_variant MODERATE 343T>C Tyr115His
M0202174 KMFIFAHI_00014 10709 3 Gut 0.04 protein_coding synonymous_variant LOW 1179T>C Arg393Arg
M0202175 KMFIFAHI_00014 10736 3 Gut 0.04 protein_coding synonymous_variant LOW 1152A>G Gln384Gln
M0202176 KMFIFAHI_00014 11737 3 Gut 0.04 protein_coding synonymous_variant LOW 151T>C Leu51Leu
M0202177 KMFIFAHI_00015 11957 3 Gut 0.04 protein_coding missense_variant MODERATE 616A>G Thr206Ala
M0202178 KMFIFAHI_00015 12147 3 Gut 0.04 protein_coding synonymous_variant LOW 426A>C Thr142Thr
M0202179 KMFIFAHI_00016 13286 3 Gut 0.04 protein_coding missense_variant MODERATE 347T>C Ile116Thr
M0202180 KMFIFAHI_00016 13513 4 Gut 0.05 protein_coding synonymous_variant LOW 120A>G Leu40Leu
M0202181 KMFIFAHI_00016 13558 4 Gut 0.05 protein_coding synonymous_variant LOW 75A>G Thr25Thr
M0202182 KMFIFAHI_00017 14194 5 Gut 0.07 protein_coding missense_variant MODERATE 42A>G Ile14Met
M0202183 KMFIFAHI_00019 14539 5 Gut 0.07 protein_coding synonymous_variant LOW 2523A>G Arg841Arg
M0202184 KMFIFAHI_00019 14548 4 Gut 0.05 protein_coding synonymous_variant LOW 2514A>G Thr838Thr
M0202185 KMFIFAHI_00019 14659 3 Gut 0.04 protein_coding synonymous_variant LOW 2403G>A Gln801Gln
M0202186 KMFIFAHI_00019 14740 5 Gut 0.07 protein_coding synonymous_variant LOW 2322A>G Ser774Ser
M0202187 KMFIFAHI_00019 14869 3 Gut 0.04 protein_coding synonymous_variant LOW 2193A>T Arg731Arg
M0202188 KMFIFAHI_00019 14923 4 Gut 0.05 protein_coding synonymous_variant LOW 2139A>G Ala713Ala
M0202189 KMFIFAHI_00019 14938 4 Gut 0.05 protein_coding synonymous_variant LOW 2124A>G Leu708Leu
M0202190 KMFIFAHI_00019 14941 3 Gut 0.04 protein_coding synonymous_variant LOW 2121G>A Glu707Glu
M0202191 KMFIFAHI_00019 14953 4 Gut 0.05 protein_coding synonymous_variant LOW 2109G>A Gly703Gly
M0202192 KMFIFAHI_00019 15268 3 Gut 0.04 protein_coding synonymous_variant LOW 1794T>C Asn598Asn
M0202193 KMFIFAHI_00019 15319 3 Gut 0.04 protein_coding synonymous_variant LOW 1743A>G Glu581Glu
M0202194 KMFIFAHI_00019 16348 5 Gut 0.07 protein_coding synonymous_variant LOW 714T>C Ala238Ala
M0202195 KMFIFAHI_00019 16657 4 Gut 0.05 protein_coding synonymous_variant LOW 405T>C Ser135Ser
M0202196 KMFIFAHI_00019 16791 6 Gut 0.08 protein_coding missense_variant MODERATE 271C>A Leu91Met
M0202197 KMFIFAHI_00019 17035 4 Gut 0.05 protein_coding synonymous_variant LOW 27C>A Ser9Ser
M0202198 KMFIFAHI_00021 17400 4 Gut 0.05 protein_coding synonymous_variant LOW 327A>G Val109Val
M0202199 KMFIFAHI_00022 18027 3 Gut 0.04 protein_coding synonymous_variant LOW 63T>C Phe21Phe
M0202200 KMFIFAHI_00024 18556 3 Gut 0.04 protein_coding missense_variant MODERATE 340T>A Cys114Ser
M0202201 KMFIFAHI_00024 18588 3 Gut 0.04 protein_coding missense_variant MODERATE 308T>A Phe103Tyr
M0202202 KMFIFAHI_00024 18605 3 Gut 0.04 protein_coding synonymous_variant LOW 291C>T Asp97Asp
M0202203 KMFIFAHI_00024 18671 4 Gut 0.05 protein_coding synonymous_variant LOW 225T>C Tyr75Tyr
M0202204 KMFIFAHI_00024 18700 3 Gut 0.04 protein_coding missense_variant MODERATE 196T>C Phe66Leu
M0202205 KMFIFAHI_00025 19445 3 Gut 0.04 protein_coding synonymous_variant LOW 354T>C Asp118Asp
M0202206 KMFIFAHI_00025 19652 3 Gut 0.04 protein_coding synonymous_variant LOW 147C>T Thr49Thr
M0202207 KMFIFAHI_00025 19673 3 Gut 0.04 protein_coding synonymous_variant LOW 126A>G Lys42Lys
M0202208 KMFIFAHI_00019 19983 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -2922C>T None
M0202209 KMFIFAHI_00019 20027 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -2966C>T None
M0202210 KMFIFAHI_00026 20254 3 Gut 0.04 protein_coding missense_variant MODERATE 920G>C Cys307Ser
M0202211 KMFIFAHI_00026 20262 3 Gut 0.04 protein_coding synonymous_variant LOW 912T>C Leu304Leu
M0202212 KMFIFAHI_00026 20307 3 Gut 0.04 protein_coding synonymous_variant LOW 867C>T Asp289Asp
M0202213 KMFIFAHI_00026 20729 3 Gut 0.04 protein_coding missense_variant MODERATE 445A>G Asn149Asp
M0202214 KMFIFAHI_00026 20874 3 Gut 0.04 protein_coding synonymous_variant LOW 300C>G Gly100Gly
M0202215 KMFIFAHI_00019 21508 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4447G>A None
M0202216 KMFIFAHI_00019 21513 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4452T>C None
M0202217 KMFIFAHI_00019 21517 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4456C>T None
M0202218 KMFIFAHI_00019 21527 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4466C>A None
M0202219 KMFIFAHI_00019 21528 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4467A>G None
M0202220 KMFIFAHI_00019 21613 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4552G>A None
M0202221 KMFIFAHI_00019 21634 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4573C>T None
M0202222 KMFIFAHI_00019 21653 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4592G>A None
M0202223 KMFIFAHI_00019 21698 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4637C>T None
M0202224 KMFIFAHI_00027 22173 4 Gut 0.05 protein_coding missense_variant MODERATE 176A>C Lys59Thr
M0202225 KMFIFAHI_00027 22178 4 Gut 0.05 protein_coding synonymous_variant LOW 171A>G Pro57Pro
M0202226 KMFIFAHI_00027 22205 3 Gut 0.04 protein_coding synonymous_variant LOW 144C>T Ile48Ile
M0202227 KMFIFAHI_00027 22211 5 Gut 0.07 protein_coding missense_variant MODERATE 138C>G His46Gln
M0202228 KMFIFAHI_00027 22232 4 Gut 0.05 protein_coding synonymous_variant LOW 117C>T Ile39Ile
M0202229 KMFIFAHI_00027 22235 3 Gut 0.04 protein_coding synonymous_variant LOW 114T>C Thr38Thr
M0202230 KMFIFAHI_00028 22401 4 Gut 0.05 protein_coding synonymous_variant LOW 651T>G Ala217Ala
M0202231 KMFIFAHI_00052 50142 5 Gut 0.07 protein_coding upstream_gene_variant MODIFIER -4974C>T None
M0202232 KMFIFAHI_00017 14186 4 Gut 0.05 protein_coding missense_variant MODERATE 50T>C Met17Thr
M0202233 KMFIFAHI_00025 19747 3 Gut 0.04 protein_coding missense_variant MODERATE 52G>A Ala18Thr
M0202234 KMFIFAHI_00023 23280 3 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4982G>A None
M0202235 KMFIFAHI_00030 23807 3 Gut 0.04 protein_coding synonymous_variant LOW 18A>G Gln6Gln
M0202236 KMFIFAHI_00079 68906 3 Gut 0.04 protein_coding missense_variant MODERATE 255T>A Asn85Lys
M0202237 KMFIFAHI_00079 68907 3 Gut 0.04 protein_coding missense_variant MODERATE 256A>G Asn86Asp
M0202238 KMFIFAHI_00079 68910 3 Gut 0.04 protein_coding missense_variant MODERATE 259G>A Gly87Ser
M0202239 KMFIFAHI_00079 68911 3 Gut 0.04 protein_coding missense_variant MODERATE 260G>A Gly87Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
KMFIFAHI_00051 PHI:3281 AS87_04050 71.4 3e-136 1 325 1.0000 1.0000 birds fibrinous serositis; caseous salpingitis; vegetative disorder lipopolysaccharide biosynthesis and pathogenicity reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
KMFIFAHI_00036 QUT64421.1|GT4 100 1.11e-279 1 378 1 1
KMFIFAHI_00038 QUT55894.1|GT2 100 1.57e-228 1 304 1 1
KMFIFAHI_00040 QRP91616.1|GT4 100 5.41e-274 1 366 1 1
KMFIFAHI_00041 BBK89584.1|GT2 100 6.37e-226 1 300 1 1
KMFIFAHI_00042 QRP91614.1|GT4 100 4.79e-292 1 391 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term