Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1256
  Reference Plasmid   NZ_CP143950.1
  Reference Plasmid Size   111407
  Reference Plasmid GC Content   0.44
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0204537 JGANFIMI_00020 21458 5 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4397G>A None
M0204538 JGANFIMI_00020 21497 7 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -4436A>G None
M0204539 JGANFIMI_00020 21502 5 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4441C>T None
M0204540 JGANFIMI_00020 21515 7 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -4454A>C None
M0204541 JGANFIMI_00020 21532 6 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -4471G>A None
M0204542 JGANFIMI_00020 21550 7 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -4489G>A None
M0204543 JGANFIMI_00020 21568 5 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4507T>C None
M0204544 JGANFIMI_00020 21570 8 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -4509A>G None
M0204545 JGANFIMI_00020 21577 7 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -4516C>T None
M0204546 JGANFIMI_00020 21725 5 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4664C>T None
M0204547 JGANFIMI_00020 21733 5 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4672C>T None
M0204548 JGANFIMI_00028 22100 7 Gut 0.18 protein_coding missense_variant MODERATE 251A>G Lys84Arg
M0204549 JGANFIMI_00028 22303 7 Gut 0.18 protein_coding synonymous_variant LOW 48C>T Leu16Leu
M0204550 JGANFIMI_00028 22331 6 Gut 0.16 protein_coding missense_variant MODERATE 20G>A Arg7Lys
M0204551 JGANFIMI_00084 74180 4 Gut 0.11 protein_coding synonymous_variant LOW 60T>C Thr20Thr
M0204552 JGANFIMI_00008 5772 5 Gut 0.13 protein_coding missense_variant MODERATE 283G>A Val95Ile
M0204553 JGANFIMI_00008 5790 5 Gut 0.13 protein_coding missense_variant MODERATE 265A>T Thr89Ser
M0204554 JGANFIMI_00008 5796 5 Gut 0.13 protein_coding synonymous_variant LOW 259C>T Leu87Leu
M0204555 JGANFIMI_00008 5839 5 Gut 0.13 protein_coding synonymous_variant LOW 216A>G Lys72Lys
M0204556 JGANFIMI_00008 5845 5 Gut 0.13 protein_coding synonymous_variant LOW 210T>A Val70Val
M0204557 JGANFIMI_00008 5851 5 Gut 0.13 protein_coding synonymous_variant LOW 204T>C Phe68Phe
M0204558 JGANFIMI_00008 5863 5 Gut 0.13 protein_coding synonymous_variant LOW 192C>T Leu64Leu
M0204559 JGANFIMI_00008 5866 5 Gut 0.13 protein_coding synonymous_variant LOW 189C>T Gly63Gly
M0204560 JGANFIMI_00008 5869 5 Gut 0.13 protein_coding synonymous_variant LOW 186A>C Gly62Gly
M0204561 JGANFIMI_00008 5881 5 Gut 0.13 protein_coding synonymous_variant LOW 174T>C Val58Val
M0204562 JGANFIMI_00008 5903 5 Gut 0.13 protein_coding missense_variant MODERATE 152T>C Ile51Thr
M0204563 JGANFIMI_00008 5911 5 Gut 0.13 protein_coding synonymous_variant LOW 144G>A Glu48Glu
M0204564 JGANFIMI_00009 6228 3 Gut 0.08 protein_coding synonymous_variant LOW 180G>A Gly60Gly
M0204565 JGANFIMI_00009 6252 5 Gut 0.13 protein_coding synonymous_variant LOW 156A>G Lys52Lys
M0204566 JGANFIMI_00009 6267 4 Gut 0.11 protein_coding synonymous_variant LOW 141G>A Val47Val
M0204567 JGANFIMI_00009 6273 5 Gut 0.13 protein_coding synonymous_variant LOW 135T>C Cys45Cys
M0204568 JGANFIMI_00010 6635 5 Gut 0.13 protein_coding missense_variant MODERATE 986A>T Gln329Leu
M0204569 JGANFIMI_00010 6640 5 Gut 0.13 protein_coding synonymous_variant LOW 981C>T Phe327Phe
M0204570 JGANFIMI_00010 6678 5 Gut 0.13 protein_coding missense_variant MODERATE 943G>T Ala315Ser
M0204571 JGANFIMI_00010 6681 5 Gut 0.13 protein_coding missense_variant MODERATE 940A>G Thr314Ala
M0204572 JGANFIMI_00010 6682 5 Gut 0.13 protein_coding synonymous_variant LOW 939T>C His313His
M0204573 JGANFIMI_00010 6700 5 Gut 0.13 protein_coding synonymous_variant LOW 921C>T Ser307Ser
M0204574 JGANFIMI_00010 6709 5 Gut 0.13 protein_coding synonymous_variant LOW 912A>T Gly304Gly
M0204575 JGANFIMI_00010 6730 5 Gut 0.13 protein_coding synonymous_variant LOW 891C>T Tyr297Tyr
M0204576 JGANFIMI_00010 6772 5 Gut 0.13 protein_coding synonymous_variant LOW 849A>G Lys283Lys
M0204577 JGANFIMI_00010 6775 5 Gut 0.13 protein_coding synonymous_variant LOW 846A>G Leu282Leu
M0204578 JGANFIMI_00010 6790 5 Gut 0.13 protein_coding synonymous_variant LOW 831A>G Glu277Glu
M0204579 JGANFIMI_00010 6804 5 Gut 0.13 protein_coding missense_variant MODERATE 817C>T His273Tyr
M0204580 JGANFIMI_00010 6895 3 Gut 0.08 protein_coding synonymous_variant LOW 726C>T Gly242Gly
M0204581 JGANFIMI_00010 6922 6 Gut 0.16 protein_coding synonymous_variant LOW 699A>G Glu233Glu
M0204582 JGANFIMI_00010 6925 4 Gut 0.11 protein_coding synonymous_variant LOW 696A>G Gly232Gly
M0204583 JGANFIMI_00010 6931 3 Gut 0.08 protein_coding synonymous_variant LOW 690G>A Ser230Ser
M0204584 JGANFIMI_00010 6949 6 Gut 0.16 protein_coding synonymous_variant LOW 672G>T Leu224Leu
M0204585 JGANFIMI_00012 7978 6 Gut 0.16 protein_coding synonymous_variant LOW 1323A>G Thr441Thr
M0204586 JGANFIMI_00012 8008 4 Gut 0.11 protein_coding synonymous_variant LOW 1293G>A Arg431Arg
M0204587 JGANFIMI_00012 8013 4 Gut 0.11 protein_coding missense_variant MODERATE 1288A>G Thr430Ala
M0204588 JGANFIMI_00012 8022 6 Gut 0.16 protein_coding missense_variant MODERATE 1279G>C Glu427Gln
M0204589 JGANFIMI_00012 8026 6 Gut 0.16 protein_coding synonymous_variant LOW 1275T>C Thr425Thr
M0204590 JGANFIMI_00012 8143 3 Gut 0.08 protein_coding synonymous_variant LOW 1158C>A Gly386Gly
M0204591 JGANFIMI_00012 8150 3 Gut 0.08 protein_coding missense_variant MODERATE 1151T>A Leu384Gln
M0204592 JGANFIMI_00012 8176 4 Gut 0.11 protein_coding synonymous_variant LOW 1125A>G Glu375Glu
M0204593 JGANFIMI_00012 8257 4 Gut 0.11 protein_coding synonymous_variant LOW 1044A>G Lys348Lys
M0204594 JGANFIMI_00012 8374 4 Gut 0.11 protein_coding synonymous_variant LOW 927C>A Thr309Thr
M0204595 JGANFIMI_00012 8380 4 Gut 0.11 protein_coding synonymous_variant LOW 921C>G Ala307Ala
M0204596 JGANFIMI_00012 8392 4 Gut 0.11 protein_coding synonymous_variant LOW 909G>A Glu303Glu
M0204597 JGANFIMI_00012 9022 6 Gut 0.16 protein_coding missense_variant MODERATE 279T>G Asp93Glu
M0204598 JGANFIMI_00013 9477 6 Gut 0.16 protein_coding synonymous_variant LOW 933T>C Asp311Asp
M0204599 JGANFIMI_00013 9543 6 Gut 0.16 protein_coding synonymous_variant LOW 867A>G Gln289Gln
M0204600 JGANFIMI_00013 9628 6 Gut 0.16 protein_coding missense_variant MODERATE 782A>G Asp261Gly
M0204601 JGANFIMI_00013 9786 6 Gut 0.16 protein_coding synonymous_variant LOW 624T>C Phe208Phe
M0204602 JGANFIMI_00013 9810 6 Gut 0.16 protein_coding synonymous_variant LOW 600T>C Asn200Asn
M0204603 JGANFIMI_00013 9847 3 Gut 0.08 protein_coding missense_variant MODERATE 563C>T Ala188Val
M0204604 JGANFIMI_00013 10158 6 Gut 0.16 protein_coding synonymous_variant LOW 252T>C Phe84Phe
M0204605 JGANFIMI_00013 10365 4 Gut 0.11 protein_coding synonymous_variant LOW 45T>C Ser15Ser
M0204606 JGANFIMI_00013 10376 4 Gut 0.11 protein_coding missense_variant MODERATE 34T>C Phe12Leu
M0204607 JGANFIMI_00015 11062 7 Gut 0.18 protein_coding missense_variant MODERATE 826A>G Ile276Val
M0204608 JGANFIMI_00015 11063 3 Gut 0.08 protein_coding synonymous_variant LOW 825T>C Gly275Gly
M0204609 JGANFIMI_00015 11278 7 Gut 0.18 protein_coding missense_variant MODERATE 610G>A Ala204Thr
M0204610 JGANFIMI_00015 11303 7 Gut 0.18 protein_coding synonymous_variant LOW 585T>A Ala195Ala
M0204611 JGANFIMI_00015 11375 5 Gut 0.13 protein_coding synonymous_variant LOW 513C>T Ser171Ser
M0204612 JGANFIMI_00015 11585 7 Gut 0.18 protein_coding synonymous_variant LOW 303G>A Glu101Glu
M0204613 JGANFIMI_00015 11701 4 Gut 0.11 protein_coding missense_variant MODERATE 187G>A Asp63Asn
M0204614 JGANFIMI_00015 11783 7 Gut 0.18 protein_coding synonymous_variant LOW 105A>G Gly35Gly
M0204615 JGANFIMI_00016 12147 5 Gut 0.13 protein_coding synonymous_variant LOW 426C>A Thr142Thr
M0204616 JGANFIMI_00016 12231 4 Gut 0.11 protein_coding synonymous_variant LOW 342G>A Glu114Glu
M0204617 JGANFIMI_00016 12363 8 Gut 0.21 protein_coding synonymous_variant LOW 210A>G Arg70Arg
M0204618 JGANFIMI_00016 12521 9 Gut 0.24 protein_coding synonymous_variant LOW 52A>C Arg18Arg
M0204619 JGANFIMI_00017 12975 8 Gut 0.21 protein_coding synonymous_variant LOW 658T>C Leu220Leu
M0204620 JGANFIMI_00017 12982 8 Gut 0.21 protein_coding synonymous_variant LOW 651A>G Val217Val
M0204621 JGANFIMI_00017 12991 8 Gut 0.21 protein_coding synonymous_variant LOW 642C>A Val214Val
M0204622 JGANFIMI_00017 12994 8 Gut 0.21 protein_coding synonymous_variant LOW 639T>C Phe213Phe
M0204623 JGANFIMI_00017 13375 8 Gut 0.21 protein_coding synonymous_variant LOW 258T>C Ile86Ile
M0204624 JGANFIMI_00017 13384 3 Gut 0.08 protein_coding synonymous_variant LOW 249C>T Ala83Ala
M0204625 JGANFIMI_00017 13567 5 Gut 0.13 protein_coding synonymous_variant LOW 66G>A Ser22Ser
M0204626 JGANFIMI_00018 13966 5 Gut 0.13 protein_coding synonymous_variant LOW 270A>G Leu90Leu
M0204627 JGANFIMI_00018 14186 6 Gut 0.16 protein_coding missense_variant MODERATE 50T>C Met17Thr
M0204628 JGANFIMI_00018 14194 7 Gut 0.18 protein_coding missense_variant MODERATE 42A>G Ile14Met
M0204629 JGANFIMI_00019 14283 3 Gut 0.08 protein_coding synonymous_variant LOW 180G>A Leu60Leu
M0204630 JGANFIMI_00020 14737 6 Gut 0.16 protein_coding synonymous_variant LOW 2325G>A Glu775Glu
M0204631 JGANFIMI_00020 14836 6 Gut 0.16 protein_coding synonymous_variant LOW 2226A>G Leu742Leu
M0204632 JGANFIMI_00020 15268 3 Gut 0.08 protein_coding synonymous_variant LOW 1794C>T Asn598Asn
M0204633 JGANFIMI_00020 15373 6 Gut 0.16 protein_coding synonymous_variant LOW 1689T>C Ile563Ile
M0204634 JGANFIMI_00020 15403 6 Gut 0.16 protein_coding synonymous_variant LOW 1659T>C Ala553Ala
M0204635 JGANFIMI_00020 15550 4 Gut 0.11 protein_coding synonymous_variant LOW 1512C>T Ile504Ile
M0204636 JGANFIMI_00020 15574 5 Gut 0.13 protein_coding synonymous_variant LOW 1488A>G Glu496Glu
M0204637 JGANFIMI_00020 15676 7 Gut 0.18 protein_coding synonymous_variant LOW 1386T>C Leu462Leu
M0204638 JGANFIMI_00020 15721 3 Gut 0.08 protein_coding synonymous_variant LOW 1341A>G Gly447Gly
M0204639 JGANFIMI_00020 15838 7 Gut 0.18 protein_coding synonymous_variant LOW 1224A>G Leu408Leu
M0204640 JGANFIMI_00020 16267 5 Gut 0.13 protein_coding synonymous_variant LOW 795A>G Gln265Gln
M0204641 JGANFIMI_00020 16285 4 Gut 0.11 protein_coding synonymous_variant LOW 777T>C Asn259Asn
M0204642 JGANFIMI_00020 16438 3 Gut 0.08 protein_coding synonymous_variant LOW 624G>A Thr208Thr
M0204643 JGANFIMI_00020 16477 5 Gut 0.13 protein_coding synonymous_variant LOW 585A>G Ser195Ser
M0204644 JGANFIMI_00020 16483 4 Gut 0.11 protein_coding synonymous_variant LOW 579C>T Gly193Gly
M0204645 JGANFIMI_00020 16544 7 Gut 0.18 protein_coding missense_variant MODERATE 518G>A Cys173Tyr
M0204646 JGANFIMI_00020 16927 7 Gut 0.18 protein_coding synonymous_variant LOW 135A>G Gln45Gln
M0204647 JGANFIMI_00022 17589 6 Gut 0.16 protein_coding synonymous_variant LOW 138A>T Ile46Ile
M0204648 JGANFIMI_00022 17595 6 Gut 0.16 protein_coding synonymous_variant LOW 132A>G Leu44Leu
M0204649 JGANFIMI_00022 17613 6 Gut 0.16 protein_coding synonymous_variant LOW 114A>G Ala38Ala
M0204650 JGANFIMI_00022 17673 4 Gut 0.11 protein_coding synonymous_variant LOW 54C>T Tyr18Tyr
M0204651 JGANFIMI_00022 17704 4 Gut 0.11 protein_coding missense_variant MODERATE 23A>G Lys8Arg
M0204652 JGANFIMI_00023 17797 6 Gut 0.16 protein_coding missense_variant MODERATE 293T>C Phe98Ser
M0204653 JGANFIMI_00023 17805 3 Gut 0.08 protein_coding missense_variant MODERATE 285G>T Glu95Asp
M0204654 JGANFIMI_00023 17865 4 Gut 0.11 protein_coding synonymous_variant LOW 225T>C Tyr75Tyr
M0204655 JGANFIMI_00023 17891 4 Gut 0.11 protein_coding synonymous_variant LOW 199C>T Leu67Leu
M0204656 JGANFIMI_00023 17941 6 Gut 0.16 protein_coding missense_variant MODERATE 149T>C Val50Ala
M0204657 JGANFIMI_00023 17968 3 Gut 0.08 protein_coding missense_variant MODERATE 122C>T Ala41Val
M0204658 JGANFIMI_00023 17971 5 Gut 0.13 protein_coding missense_variant MODERATE 119G>A Gly40Glu
M0204659 JGANFIMI_00023 18064 3 Gut 0.08 protein_coding missense_variant MODERATE 26T>C Val9Ala
M0204660 JGANFIMI_00025 18410 6 Gut 0.16 protein_coding synonymous_variant LOW 486C>A Ala162Ala
M0204661 JGANFIMI_00025 18604 5 Gut 0.13 protein_coding missense_variant MODERATE 292G>A Glu98Lys
M0204662 JGANFIMI_00025 18805 6 Gut 0.16 protein_coding missense_variant MODERATE 91T>G Ser31Ala
M0204663 JGANFIMI_00018 19044 4 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4809C>T None
M0204664 JGANFIMI_00018 19045 4 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4810T>C None
M0204665 JGANFIMI_00018 19124 6 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -4889A>G None
M0204666 JGANFIMI_00027 20254 7 Gut 0.18 protein_coding missense_variant MODERATE 920G>C Cys307Ser
M0204667 JGANFIMI_00027 20307 6 Gut 0.16 protein_coding synonymous_variant LOW 867C>T Asp289Asp
M0204668 JGANFIMI_00027 20321 4 Gut 0.11 protein_coding synonymous_variant LOW 853C>T Leu285Leu
M0204669 JGANFIMI_00027 20362 5 Gut 0.13 protein_coding missense_variant MODERATE 812A>G Lys271Arg
M0204670 JGANFIMI_00027 20406 4 Gut 0.11 protein_coding synonymous_variant LOW 768G>A Glu256Glu
M0204671 JGANFIMI_00027 20476 5 Gut 0.13 protein_coding missense_variant MODERATE 698T>C Met233Thr
M0204672 JGANFIMI_00027 20526 5 Gut 0.13 protein_coding synonymous_variant LOW 648G>A Ala216Ala
M0204673 JGANFIMI_00027 20558 5 Gut 0.13 protein_coding synonymous_variant LOW 616C>T Leu206Leu
M0204674 JGANFIMI_00020 21229 4 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4168T>A None
M0204675 JGANFIMI_00020 21356 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4295A>G None
M0204676 JGANFIMI_00024 23200 8 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -4902A>T None
M0204677 JGANFIMI_00024 23255 9 Gut 0.24 protein_coding upstream_gene_variant MODIFIER -4957T>C None
M0204678 JGANFIMI_00031 23809 8 Gut 0.21 protein_coding synonymous_variant LOW 18A>G Gln6Gln
M0204679 JGANFIMI_00031 23848 9 Gut 0.24 protein_coding synonymous_variant LOW 57T>C Ile19Ile
M0204680 JGANFIMI_00031 23904 3 Gut 0.08 protein_coding missense_variant MODERATE 113T>C Ile38Thr
M0204681 JGANFIMI_00031 23963 3 Gut 0.08 protein_coding synonymous_variant LOW 172A>C Arg58Arg
M0204682 JGANFIMI_00031 24100 8 Gut 0.21 protein_coding synonymous_variant LOW 309A>G Leu103Leu
M0204683 JGANFIMI_00031 24145 8 Gut 0.21 protein_coding synonymous_variant LOW 354A>G Thr118Thr
M0204684 JGANFIMI_00031 24178 8 Gut 0.21 protein_coding synonymous_variant LOW 387A>G Gly129Gly
M0204685 JGANFIMI_00031 24229 8 Gut 0.21 protein_coding synonymous_variant LOW 438C>T Tyr146Tyr
M0204686 JGANFIMI_00031 24232 8 Gut 0.21 protein_coding synonymous_variant LOW 441T>G Gly147Gly
M0204687 JGANFIMI_00031 24233 8 Gut 0.21 protein_coding synonymous_variant LOW 442C>T Leu148Leu
M0204688 JGANFIMI_00031 24235 8 Gut 0.21 protein_coding synonymous_variant LOW 444G>A Leu148Leu
M0204689 JGANFIMI_00031 24249 8 Gut 0.21 protein_coding missense_variant MODERATE 458G>A Arg153Lys
M0204690 JGANFIMI_00031 24256 8 Gut 0.21 protein_coding synonymous_variant LOW 465A>T Gly155Gly
M0204691 JGANFIMI_00031 24258 8 Gut 0.21 protein_coding missense_variant MODERATE 467G>T Gly156Val
M0204692 JGANFIMI_00031 24271 8 Gut 0.21 protein_coding synonymous_variant LOW 480G>A Thr160Thr
M0204693 JGANFIMI_00031 24281 8 Gut 0.21 protein_coding missense_variant MODERATE 490G>T Ala164Ser
M0204694 JGANFIMI_00031 24385 6 Gut 0.16 protein_coding synonymous_variant LOW 594T>C Tyr198Tyr
M0204695 JGANFIMI_00031 24445 6 Gut 0.16 protein_coding synonymous_variant LOW 654C>G Leu218Leu
M0204696 JGANFIMI_00031 24586 5 Gut 0.13 protein_coding missense_variant MODERATE 795C>A Asn265Lys
M0204697 JGANFIMI_00031 24624 5 Gut 0.13 protein_coding missense_variant MODERATE 833A>G Lys278Arg
M0204698 JGANFIMI_00031 24730 5 Gut 0.13 protein_coding synonymous_variant LOW 939C>T Gly313Gly
M0204699 JGANFIMI_00031 25067 4 Gut 0.11 protein_coding missense_variant MODERATE 1276G>A Gly426Ser
M0204700 JGANFIMI_00031 25068 4 Gut 0.11 protein_coding missense_variant MODERATE 1277G>A Gly426Asp
M0204701 JGANFIMI_00031 25080 4 Gut 0.11 protein_coding missense_variant MODERATE 1289T>C Met430Thr
M0204702 JGANFIMI_00031 25084 4 Gut 0.11 protein_coding synonymous_variant LOW 1293C>A Ala431Ala
M0204703 JGANFIMI_00031 25093 4 Gut 0.11 protein_coding missense_variant MODERATE 1302G>T Glu434Asp
M0204704 JGANFIMI_00031 25105 4 Gut 0.11 protein_coding synonymous_variant LOW 1314C>T Thr438Thr
M0204705 JGANFIMI_00031 25108 4 Gut 0.11 protein_coding synonymous_variant LOW 1317C>T Gly439Gly
M0204706 JGANFIMI_00031 25114 4 Gut 0.11 protein_coding synonymous_variant LOW 1323G>A Gly441Gly
M0204707 JGANFIMI_00031 25136 4 Gut 0.11 protein_coding missense_variant MODERATE 1345C>T Leu449Phe
M0204708 JGANFIMI_00031 25141 4 Gut 0.11 protein_coding missense_variant MODERATE 1350A>G Ile450Met
M0204709 JGANFIMI_00031 25165 4 Gut 0.11 protein_coding synonymous_variant LOW 1374C>G Arg458Arg
M0204710 JGANFIMI_00031 25174 4 Gut 0.11 protein_coding synonymous_variant LOW 1383T>A Gly461Gly
M0204711 JGANFIMI_00031 25186 4 Gut 0.11 protein_coding synonymous_variant LOW 1395A>T Ser465Ser
M0204712 JGANFIMI_00032 25256 3 Gut 0.08 protein_coding missense_variant MODERATE 37A>T Thr13Ser
M0204713 JGANFIMI_00032 25537 4 Gut 0.11 protein_coding synonymous_variant LOW 318G>A Gln106Gln
M0204714 JGANFIMI_00032 25602 5 Gut 0.13 protein_coding missense_variant MODERATE 383G>A Gly128Glu
M0204715 JGANFIMI_00032 25609 5 Gut 0.13 protein_coding synonymous_variant LOW 390G>A Lys130Lys
M0204716 JGANFIMI_00032 25613 5 Gut 0.13 protein_coding missense_variant MODERATE 394T>G Ser132Ala
M0204717 JGANFIMI_00032 25624 5 Gut 0.13 protein_coding synonymous_variant LOW 405T>C Val135Val
M0204718 JGANFIMI_00032 25630 4 Gut 0.11 protein_coding synonymous_variant LOW 411T>C Asp137Asp
M0204719 JGANFIMI_00031 23895 8 Gut 0.21 protein_coding missense_variant MODERATE 104A>G Tyr35Cys
M0204720 JGANFIMI_00031 24007 4 Gut 0.11 protein_coding synonymous_variant LOW 216G>A Pro72Pro
M0204721 JGANFIMI_00067 59823 4 Gut 0.11 protein_coding missense_variant MODERATE 236C>A Ala79Glu
M0204722 JGANFIMI_00067 59824 5 Gut 0.13 protein_coding missense_variant MODERATE 235G>A Ala79Thr
M0204723 JGANFIMI_00067 59827 4 Gut 0.11 protein_coding missense_variant MODERATE 232A>G Thr78Ala
M0204724 JGANFIMI_00067 59834 4 Gut 0.11 protein_coding synonymous_variant LOW 225G>A Gln75Gln
M0204725 JGANFIMI_00067 59837 4 Gut 0.11 protein_coding synonymous_variant LOW 222A>G Arg74Arg
M0204726 JGANFIMI_00067 59839 4 Gut 0.11 protein_coding synonymous_variant LOW 220A>C Arg74Arg
M0204727 JGANFIMI_00067 59855 4 Gut 0.11 protein_coding synonymous_variant LOW 204C>T Asn68Asn
M0204728 JGANFIMI_00067 59866 4 Gut 0.11 protein_coding missense_variant MODERATE 193A>G Asn65Asp
M0204729 JGANFIMI_00067 59932 6 Gut 0.16 protein_coding missense_variant MODERATE 127A>G Lys43Glu
M0204730 JGANFIMI_00067 59933 6 Gut 0.16 protein_coding synonymous_variant LOW 126A>G Leu42Leu
M0204731 JGANFIMI_00067 59992 5 Gut 0.13 protein_coding missense_variant MODERATE 67A>G Lys23Glu
M0204732 JGANFIMI_00067 59996 5 Gut 0.13 protein_coding synonymous_variant LOW 63G>A Thr21Thr
M0204733 JGANFIMI_00067 60013 6 Gut 0.16 protein_coding synonymous_variant LOW 46T>C Leu16Leu
M0204734 JGANFIMI_00067 60014 6 Gut 0.16 protein_coding synonymous_variant LOW 45A>G Leu15Leu
M0204735 JGANFIMI_00067 60017 6 Gut 0.16 protein_coding synonymous_variant LOW 42T>C Leu14Leu
M0204736 JGANFIMI_00067 60019 6 Gut 0.16 protein_coding missense_variant MODERATE 40C>T Leu14Phe
M0204737 JGANFIMI_00067 60020 6 Gut 0.16 protein_coding synonymous_variant LOW 39C>T Thr13Thr
M0204738 JGANFIMI_00067 60022 6 Gut 0.16 protein_coding missense_variant MODERATE 37A>G Thr13Ala
M0204739 JGANFIMI_00067 60026 5 Gut 0.13 protein_coding synonymous_variant LOW 33C>T Thr11Thr
M0204740 JGANFIMI_00068 60206 6 Gut 0.16 protein_coding missense_variant MODERATE 988T>C Phe330Leu
M0204741 JGANFIMI_00068 60219 6 Gut 0.16 protein_coding synonymous_variant LOW 975T>A Thr325Thr
M0204742 JGANFIMI_00068 60729 6 Gut 0.16 protein_coding synonymous_variant LOW 465C>T Pro155Pro
M0204743 JGANFIMI_00068 60936 7 Gut 0.18 protein_coding missense_variant MODERATE 258G>C Lys86Asn
M0204744 JGANFIMI_00068 61095 6 Gut 0.16 protein_coding synonymous_variant LOW 99G>A Lys33Lys
M0204745 JGANFIMI_00068 61110 6 Gut 0.16 protein_coding synonymous_variant LOW 84G>A Leu28Leu
M0204746 JGANFIMI_00068 61146 7 Gut 0.18 protein_coding synonymous_variant LOW 48C>T Val16Val
M0204747 JGANFIMI_00068 61157 7 Gut 0.18 protein_coding synonymous_variant LOW 37C>T Leu13Leu
M0204748 JGANFIMI_00068 61158 7 Gut 0.18 protein_coding synonymous_variant LOW 36C>T Phe12Phe
M0204749 JGANFIMI_00068 61161 7 Gut 0.18 protein_coding synonymous_variant LOW 33G>A Ala11Ala
M0204750 JGANFIMI_00068 61167 7 Gut 0.18 protein_coding synonymous_variant LOW 27C>A Ser9Ser
M0204751 JGANFIMI_00065 61244 8 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -4482A>C None
M0204752 JGANFIMI_00069 61366 8 Gut 0.21 protein_coding missense_variant MODERATE 448G>A Val150Met
M0204753 JGANFIMI_00070 61889 8 Gut 0.21 protein_coding synonymous_variant LOW 42T>C Asn14Asn
M0204754 JGANFIMI_00066 62001 7 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -2749T>C None
M0204755 JGANFIMI_00066 62124 7 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -2872T>A None
M0204756 JGANFIMI_00066 62233 8 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2981A>T None
M0204757 JGANFIMI_00015 11755 3 Gut 0.08 protein_coding missense_variant MODERATE 133A>G Thr45Ala
M0204758 JGANFIMI_00016 12234 4 Gut 0.11 protein_coding synonymous_variant LOW 339C>T Asn113Asn
M0204759 JGANFIMI_00016 12495 5 Gut 0.13 protein_coding synonymous_variant LOW 78T>C Ile26Ile
M0204760 JGANFIMI_00017 12784 5 Gut 0.13 protein_coding synonymous_variant LOW 849T>C Ile283Ile
M0204761 JGANFIMI_00017 12895 4 Gut 0.11 protein_coding synonymous_variant LOW 738T>C Ile246Ile
M0204762 JGANFIMI_00017 13286 4 Gut 0.11 protein_coding missense_variant MODERATE 347T>C Ile116Thr
M0204763 JGANFIMI_00017 13402 3 Gut 0.08 protein_coding synonymous_variant LOW 231C>T Ser77Ser
M0204764 JGANFIMI_00026 19747 5 Gut 0.13 protein_coding missense_variant MODERATE 52G>A Ala18Thr
M0204765 JGANFIMI_00027 20085 5 Gut 0.13 protein_coding synonymous_variant LOW 1089A>G Val363Val
M0204766 JGANFIMI_00027 20101 5 Gut 0.13 protein_coding missense_variant MODERATE 1073T>C Ile358Thr
M0204767 JGANFIMI_00027 20352 3 Gut 0.08 protein_coding synonymous_variant LOW 822C>T Tyr274Tyr
M0204768 JGANFIMI_00027 20355 3 Gut 0.08 protein_coding synonymous_variant LOW 819C>T Pro273Pro
M0204769 JGANFIMI_00020 21324 5 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -4263T>G None
M0204770 JGANFIMI_00032 25966 3 Gut 0.08 protein_coding synonymous_variant LOW 747C>T Thr249Thr
M0204771 JGANFIMI_00034 27131 6 Gut 0.16 protein_coding synonymous_variant LOW 531G>A Leu177Leu
M0204772 JGANFIMI_00034 27313 6 Gut 0.16 protein_coding missense_variant MODERATE 349A>G Asn117Asp
M0204773 JGANFIMI_00034 27317 6 Gut 0.16 protein_coding synonymous_variant LOW 345A>G Gln115Gln
M0204774 JGANFIMI_00034 27318 6 Gut 0.16 protein_coding missense_variant MODERATE 344A>G Gln115Arg
M0204775 JGANFIMI_00034 27332 6 Gut 0.16 protein_coding synonymous_variant LOW 330G>A Ala110Ala
M0204776 JGANFIMI_00034 27335 6 Gut 0.16 protein_coding synonymous_variant LOW 327G>A Leu109Leu
M0204777 JGANFIMI_00034 27339 6 Gut 0.16 protein_coding missense_variant MODERATE 323A>T Gln108Leu
M0204778 JGANFIMI_00034 27343 6 Gut 0.16 protein_coding missense_variant MODERATE 319C>A Gln107Lys
M0204779 JGANFIMI_00020 21254 4 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4193A>G None
M0204780 JGANFIMI_00032 25741 5 Gut 0.13 protein_coding synonymous_variant LOW 522G>A Ala174Ala
M0204781 JGANFIMI_00032 25747 5 Gut 0.13 protein_coding synonymous_variant LOW 528C>T Ala176Ala
M0204782 JGANFIMI_00032 25759 5 Gut 0.13 protein_coding synonymous_variant LOW 540A>T Ala180Ala
M0204783 JGANFIMI_00032 25762 5 Gut 0.13 protein_coding synonymous_variant LOW 543A>T Ser181Ser
M0204784 JGANFIMI_00032 25768 5 Gut 0.13 protein_coding synonymous_variant LOW 549G>T Ala183Ala
M0204785 JGANFIMI_00017 13093 3 Gut 0.08 protein_coding synonymous_variant LOW 540G>A Val180Val
M0204786 JGANFIMI_00017 13117 3 Gut 0.08 protein_coding synonymous_variant LOW 516C>T Asn172Asn
M0204787 JGANFIMI_00017 13214 3 Gut 0.08 protein_coding missense_variant MODERATE 419G>A Ser140Asn
M0204788 JGANFIMI_00017 13582 3 Gut 0.08 protein_coding synonymous_variant LOW 51G>C Thr17Thr
M0204789 JGANFIMI_00017 13588 3 Gut 0.08 protein_coding synonymous_variant LOW 45T>C Gly15Gly
M0204790 JGANFIMI_00017 13603 3 Gut 0.08 protein_coding synonymous_variant LOW 30T>C Leu10Leu
M0204791 JGANFIMI_00017 13621 3 Gut 0.08 protein_coding synonymous_variant LOW 12T>C Asp4Asp
M0204792 JGANFIMI_00018 13668 3 Gut 0.08 protein_coding synonymous_variant LOW 568T>C Leu190Leu
M0204793 JGANFIMI_00018 13678 3 Gut 0.08 protein_coding synonymous_variant LOW 558C>T Tyr186Tyr
M0204794 JGANFIMI_00018 13681 3 Gut 0.08 protein_coding synonymous_variant LOW 555T>C Tyr185Tyr
M0204795 JGANFIMI_00018 13702 3 Gut 0.08 protein_coding synonymous_variant LOW 534G>A Lys178Lys
M0204796 JGANFIMI_00019 14251 3 Gut 0.08 protein_coding missense_variant MODERATE 212C>T Thr71Ile
M0204797 JGANFIMI_00019 14293 3 Gut 0.08 protein_coding missense_variant MODERATE 170C>T Thr57Ile
M0204798 JGANFIMI_00019 14304 3 Gut 0.08 protein_coding synonymous_variant LOW 159G>A Lys53Lys
M0204799 JGANFIMI_00019 14426 3 Gut 0.08 protein_coding missense_variant MODERATE 37G>A Gly13Ser
M0204800 JGANFIMI_00020 14554 3 Gut 0.08 protein_coding synonymous_variant LOW 2508G>A Gln836Gln
M0204801 JGANFIMI_00020 14659 3 Gut 0.08 protein_coding synonymous_variant LOW 2403G>A Gln801Gln
M0204802 JGANFIMI_00020 14869 3 Gut 0.08 protein_coding synonymous_variant LOW 2193A>T Arg731Arg
M0204803 JGANFIMI_00020 14941 3 Gut 0.08 protein_coding synonymous_variant LOW 2121G>A Glu707Glu
M0204804 JGANFIMI_00020 14953 3 Gut 0.08 protein_coding synonymous_variant LOW 2109G>A Gly703Gly
M0204805 JGANFIMI_00020 15010 3 Gut 0.08 protein_coding synonymous_variant LOW 2052G>A Pro684Pro
M0204806 JGANFIMI_00020 15118 4 Gut 0.11 protein_coding synonymous_variant LOW 1944A>G Thr648Thr
M0204807 JGANFIMI_00020 16012 3 Gut 0.08 protein_coding synonymous_variant LOW 1050T>C Ala350Ala
M0204808 JGANFIMI_00032 25873 4 Gut 0.11 protein_coding synonymous_variant LOW 654G>A Glu218Glu
M0204809 JGANFIMI_00032 25954 3 Gut 0.08 protein_coding synonymous_variant LOW 735A>G Val245Val
M0204810 JGANFIMI_00033 26317 4 Gut 0.11 protein_coding synonymous_variant LOW 87A>T Pro29Pro
M0204811 JGANFIMI_00028 26407 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4057G>T None
M0204812 JGANFIMI_00028 26514 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4164T>A None
M0204813 JGANFIMI_00034 27272 4 Gut 0.11 protein_coding synonymous_variant LOW 390C>T Asn130Asn
M0204814 JGANFIMI_00066 62576 7 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -3324G>A None
M0204815 JGANFIMI_00071 62699 6 Gut 0.16 protein_coding synonymous_variant LOW 1203C>T Ile401Ile
M0204816 JGANFIMI_00071 62760 7 Gut 0.18 protein_coding missense_variant MODERATE 1142G>A Ser381Asn
M0204817 JGANFIMI_00071 62765 7 Gut 0.18 protein_coding synonymous_variant LOW 1137A>G Ser379Ser
M0204818 JGANFIMI_00071 62783 7 Gut 0.18 protein_coding synonymous_variant LOW 1119A>G Glu373Glu
M0204819 JGANFIMI_00071 62800 7 Gut 0.18 protein_coding synonymous_variant LOW 1102T>C Leu368Leu
M0204820 JGANFIMI_00071 62813 7 Gut 0.18 protein_coding synonymous_variant LOW 1089C>T Ser363Ser
M0204821 JGANFIMI_00071 62840 7 Gut 0.18 protein_coding synonymous_variant LOW 1062T>C Arg354Arg
M0204822 JGANFIMI_00071 62843 7 Gut 0.18 protein_coding synonymous_variant LOW 1059A>G Ala353Ala
M0204823 JGANFIMI_00071 62849 7 Gut 0.18 protein_coding synonymous_variant LOW 1053T>C Tyr351Tyr
M0204824 JGANFIMI_00071 62873 7 Gut 0.18 protein_coding synonymous_variant LOW 1029C>T Gly343Gly
M0204825 JGANFIMI_00071 62884 7 Gut 0.18 protein_coding missense_variant MODERATE 1018A>G Lys340Glu
M0204826 JGANFIMI_00071 62925 6 Gut 0.16 protein_coding missense_variant MODERATE 977A>G Asn326Ser
M0204827 JGANFIMI_00071 62936 6 Gut 0.16 protein_coding synonymous_variant LOW 966A>G Lys322Lys
M0204828 JGANFIMI_00071 62945 6 Gut 0.16 protein_coding synonymous_variant LOW 957T>C Asp319Asp
M0204829 JGANFIMI_00071 62950 6 Gut 0.16 protein_coding missense_variant MODERATE 952A>G Thr318Ala
M0204830 JGANFIMI_00071 62953 6 Gut 0.16 protein_coding missense_variant MODERATE 949A>G Lys317Glu
M0204831 JGANFIMI_00071 62975 6 Gut 0.16 protein_coding synonymous_variant LOW 927A>G Leu309Leu
M0204832 JGANFIMI_00071 62981 6 Gut 0.16 protein_coding synonymous_variant LOW 921T>C Ser307Ser
M0204833 JGANFIMI_00071 62990 6 Gut 0.16 protein_coding missense_variant MODERATE 912A>G Ile304Met
M0204834 JGANFIMI_00071 62996 6 Gut 0.16 protein_coding synonymous_variant LOW 906T>C Asp302Asp
M0204835 JGANFIMI_00071 63043 6 Gut 0.16 protein_coding missense_variant MODERATE 859G>C Val287Leu
M0204836 JGANFIMI_00008 5362 4 Gut 0.11 protein_coding synonymous_variant LOW 693A>G Glu231Glu
M0204837 JGANFIMI_00008 5367 4 Gut 0.11 protein_coding missense_variant MODERATE 688A>G Met230Val
M0204838 JGANFIMI_00008 5368 4 Gut 0.11 protein_coding synonymous_variant LOW 687G>A Gly229Gly
M0204839 JGANFIMI_00008 5371 4 Gut 0.11 protein_coding synonymous_variant LOW 684G>A Lys228Lys
M0204840 JGANFIMI_00008 5374 4 Gut 0.11 protein_coding missense_variant MODERATE 681C>A Asn227Lys
M0204841 JGANFIMI_00008 5375 4 Gut 0.11 protein_coding missense_variant MODERATE 680A>C Asn227Thr
M0204842 JGANFIMI_00008 5376 4 Gut 0.11 protein_coding missense_variant MODERATE 679A>G Asn227Asp
M0204843 JGANFIMI_00008 5383 4 Gut 0.11 protein_coding synonymous_variant LOW 672T>C His224His
M0204844 JGANFIMI_00008 5385 4 Gut 0.11 protein_coding missense_variant MODERATE 670C>T His224Tyr
M0204845 JGANFIMI_00008 5389 4 Gut 0.11 protein_coding synonymous_variant LOW 666C>T Ile222Ile
M0204846 JGANFIMI_00008 5401 4 Gut 0.11 protein_coding synonymous_variant LOW 654A>C Ala218Ala
M0204847 JGANFIMI_00008 5452 4 Gut 0.11 protein_coding synonymous_variant LOW 603T>C Asp201Asp
M0204848 JGANFIMI_00008 5515 4 Gut 0.11 protein_coding synonymous_variant LOW 540G>A Glu180Glu
M0204849 JGANFIMI_00008 5518 4 Gut 0.11 protein_coding synonymous_variant LOW 537A>G Ser179Ser
M0204850 JGANFIMI_00008 5545 4 Gut 0.11 protein_coding synonymous_variant LOW 510C>T Ile170Ile
M0204851 JGANFIMI_00008 5580 4 Gut 0.11 protein_coding synonymous_variant LOW 475C>T Leu159Leu
M0204852 JGANFIMI_00008 5596 4 Gut 0.11 protein_coding synonymous_variant LOW 459A>G Glu153Glu
M0204853 JGANFIMI_00008 5617 4 Gut 0.11 protein_coding synonymous_variant LOW 438G>A Ser146Ser
M0204854 JGANFIMI_00008 5647 4 Gut 0.11 protein_coding synonymous_variant LOW 408T>C Asp136Asp
M0204855 JGANFIMI_00008 5665 4 Gut 0.11 protein_coding synonymous_variant LOW 390T>C Arg130Arg
M0204856 JGANFIMI_00008 5713 3 Gut 0.08 protein_coding synonymous_variant LOW 342A>G Val114Val
M0204857 JGANFIMI_00008 5716 3 Gut 0.08 protein_coding synonymous_variant LOW 339C>T Phe113Phe
M0204858 JGANFIMI_00008 5719 3 Gut 0.08 protein_coding synonymous_variant LOW 336A>G Leu112Leu
M0204859 JGANFIMI_00008 5721 3 Gut 0.08 protein_coding missense_variant MODERATE 334C>G Leu112Val
M0204860 JGANFIMI_00008 5723 3 Gut 0.08 protein_coding missense_variant MODERATE 332T>C Ile111Thr
M0204861 JGANFIMI_00008 5725 3 Gut 0.08 protein_coding synonymous_variant LOW 330C>T Pro110Pro
M0204862 JGANFIMI_00008 5731 3 Gut 0.08 protein_coding synonymous_variant LOW 324A>G Val108Val
M0204863 JGANFIMI_00009 6083 4 Gut 0.11 protein_coding missense_variant MODERATE 325T>A Ser109Thr
M0204864 JGANFIMI_00009 6100 4 Gut 0.11 protein_coding missense_variant MODERATE 308G>A Ser103Asn
M0204865 JGANFIMI_00009 6114 4 Gut 0.11 protein_coding synonymous_variant LOW 294A>T Ala98Ala
M0204866 JGANFIMI_00009 6128 4 Gut 0.11 protein_coding synonymous_variant LOW 280T>C Leu94Leu
M0204867 JGANFIMI_00010 7129 4 Gut 0.11 protein_coding synonymous_variant LOW 492C>T Asp164Asp
M0204868 JGANFIMI_00010 7348 5 Gut 0.13 protein_coding synonymous_variant LOW 273A>G Pro91Pro
M0204869 JGANFIMI_00010 7385 4 Gut 0.11 protein_coding missense_variant MODERATE 236A>G Asn79Ser
M0204870 JGANFIMI_00010 7390 4 Gut 0.11 protein_coding synonymous_variant LOW 231A>G Lys77Lys
M0204871 JGANFIMI_00010 7537 5 Gut 0.13 protein_coding synonymous_variant LOW 84A>G Gln28Gln
M0204872 JGANFIMI_00010 7567 4 Gut 0.11 protein_coding synonymous_variant LOW 54A>G Glu18Glu
M0204873 JGANFIMI_00010 7603 4 Gut 0.11 protein_coding synonymous_variant LOW 18T>C Asp6Asp
M0204874 JGANFIMI_00011 7693 5 Gut 0.13 protein_coding missense_variant MODERATE 117G>T Gln39His
M0204875 JGANFIMI_00028 21904 3 Gut 0.08 protein_coding synonymous_variant LOW 447A>G Glu149Glu
M0204876 JGANFIMI_00003 1326 3 Gut 0.08 protein_coding missense_variant MODERATE 708A>G Ile236Met
M0204877 JGANFIMI_00003 1345 3 Gut 0.08 protein_coding missense_variant MODERATE 727G>A Val243Ile
M0204878 JGANFIMI_00003 1362 3 Gut 0.08 protein_coding synonymous_variant LOW 744A>G Arg248Arg
M0204879 JGANFIMI_00003 1431 3 Gut 0.08 protein_coding synonymous_variant LOW 813G>A Leu271Leu
M0204880 JGANFIMI_00003 1626 3 Gut 0.08 protein_coding synonymous_variant LOW 1008C>T Tyr336Tyr
M0204881 JGANFIMI_00003 1706 3 Gut 0.08 protein_coding missense_variant MODERATE 1088C>T Thr363Met
M0204882 JGANFIMI_00003 1770 3 Gut 0.08 protein_coding synonymous_variant LOW 1152T>C Cys384Cys
M0204883 JGANFIMI_00003 1848 3 Gut 0.08 protein_coding synonymous_variant LOW 1230G>A Arg410Arg
M0204884 JGANFIMI_00008 6043 3 Gut 0.08 protein_coding synonymous_variant LOW 12G>A Glu4Glu
M0204885 JGANFIMI_00004 6064 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4112A>T None
M0204886 JGANFIMI_00011 7665 3 Gut 0.08 protein_coding missense_variant MODERATE 145G>C Glu49Gln
M0204887 JGANFIMI_00011 7675 3 Gut 0.08 protein_coding synonymous_variant LOW 135A>G Gln45Gln
M0204888 JGANFIMI_00011 7681 3 Gut 0.08 protein_coding synonymous_variant LOW 129C>T Asn43Asn
M0204889 JGANFIMI_00011 7685 3 Gut 0.08 protein_coding missense_variant MODERATE 125C>T Thr42Ile
M0204890 JGANFIMI_00011 7738 3 Gut 0.08 protein_coding synonymous_variant LOW 72G>A Gln24Gln
M0204891 JGANFIMI_00011 7744 3 Gut 0.08 protein_coding synonymous_variant LOW 66T>A Leu22Leu
M0204892 JGANFIMI_00011 7756 3 Gut 0.08 protein_coding synonymous_variant LOW 54A>G Leu18Leu
M0204893 JGANFIMI_00011 7758 3 Gut 0.08 protein_coding synonymous_variant LOW 52T>C Leu18Leu
M0204894 JGANFIMI_00006 7811 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4281T>G None
M0204895 JGANFIMI_00006 7815 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4285G>A None
M0204896 JGANFIMI_00006 7818 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4288T>A None
M0204897 JGANFIMI_00006 7826 3 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4296C>A None
M0204898 JGANFIMI_00012 7834 3 Gut 0.08 protein_coding synonymous_variant LOW 1467C>T Asp489Asp
M0204899 JGANFIMI_00012 7893 3 Gut 0.08 protein_coding missense_variant MODERATE 1408G>A Asp470Asn
M0204900 JGANFIMI_00012 9134 3 Gut 0.08 protein_coding missense_variant MODERATE 167C>T Ala56Val
M0204901 JGANFIMI_00012 9193 3 Gut 0.08 protein_coding synonymous_variant LOW 108C>T Phe36Phe






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
JGANFIMI_00060 VFG005992 Capsule 76.9 9.2e-183 7 418 0.9856 1 Immune modulation nucleotide sugar dehydrogenase prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
JGANFIMI_00045 QUT18586.1|GT26 78 5.79e-145 1 246 1 0.9959





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term