Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1263
  Reference Plasmid   NZ_CP145673.1
  Reference Plasmid Size   85214
  Reference Plasmid GC Content   0.50
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0205018 NJEEHBFK_00018 14758 3 Gut 0.23 protein_coding missense_variant MODERATE 718A>G Thr240Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
NJEEHBFK_00039 VFG007659 Capsular polysaccharide 78.5 7.7e-162 1 349 0.9668 0.9588 Immune modulation dTDP-glucose 4,6-dehydratase prediction
NJEEHBFK_00041 VFG005898 Capsule 71.6 3.4e-120 5 289 0.9828 0.9862 Immune modulation glucose-1-phosphate thymidylyltransferase RfbA prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
NJEEHBFK_00041 PHI:7634 rmlA 79.1 1.1e-134 3 289 0.9897 0.9795 rodents infection glucose-1-phosphate thymidylyltransferase reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
NJEEHBFK_00036 ARD54408.1|GT0 100 4.63e-220 1 302 1 1
NJEEHBFK_00037 ARD52879.1|GT2 100 0 1 669 1 1
NJEEHBFK_00038 AUZ71157.1|GT0 97.1 8.97e-249 1 341 1 1
NJEEHBFK_00043 ARD52885.1|GT107 99.7 0 1 667 1 1
NJEEHBFK_00058 ARD52874.1|GT2 98.3 0 1 803 0.995 0.9988





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
NJEEHBFK_00039 9.B.18.2.4 75.6 3.5e-157 2 350 0.9668 0.9718 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.18 The Xanthan Glycosyl Transferase, GumD (GumD) Family