Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1265
  Reference Plasmid   NZ_CP145685.1
  Reference Plasmid Size   10850
  Reference Plasmid GC Content   0.48
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0205021 GNFONEEK_00001 5158 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3568C>T None
M0205022 GNFONEEK_00001 5207 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3617A>T None
M0205023 GNFONEEK_00001 5225 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3635T>C None
M0205024 GNFONEEK_00001 5261 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3671G>T None
M0205025 GNFONEEK_00001 5308 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3718C>T None
M0205026 GNFONEEK_00001 5325 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3735C>A None
M0205027 GNFONEEK_00001 5334 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3744T>G None
M0205028 GNFONEEK_00006 5394 3 Gut 0.21 protein_coding missense_variant MODERATE 60C>G Ser20Arg
M0205029 GNFONEEK_00001 6249 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -4659T>C None
M0205030 GNFONEEK_00002 6778 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -4134G>A None
M0205031 GNFONEEK_00002 7336 6 Gut 0.43 protein_coding upstream_gene_variant MODIFIER -4692G>A None
M0205032 GNFONEEK_00003 7818 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3235C>T None
M0205033 GNFONEEK_00003 7834 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3251G>A None
M0205034 GNFONEEK_00003 7896 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3313A>G None
M0205035 GNFONEEK_00003 7934 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3351A>G None
M0205036 GNFONEEK_00003 7945 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3362A>G None
M0205037 GNFONEEK_00003 7955 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3372C>A None
M0205038 GNFONEEK_00003 7968 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3385T>A None
M0205039 GNFONEEK_00003 7990 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3407C>T None
M0205040 GNFONEEK_00003 8000 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3417C>T None
M0205041 GNFONEEK_00003 8001 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3418G>C None
M0205042 GNFONEEK_00003 8003 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3420T>G None
M0205043 GNFONEEK_00003 8014 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3431C>T None
M0205044 GNFONEEK_00003 8025 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3442C>T None
M0205045 GNFONEEK_00003 8035 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3452C>T None
M0205046 GNFONEEK_00003 8065 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3482C>T None
M0205047 GNFONEEK_00003 8066 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3483T>G None
M0205048 GNFONEEK_00003 8089 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3506G>A None
M0205049 GNFONEEK_00003 8125 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3542A>T None
M0205050 GNFONEEK_00003 8154 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3571C>T None
M0205051 GNFONEEK_00003 8233 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3650G>A None
M0205052 GNFONEEK_00003 8236 3 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3653T>C None
M0205053 GNFONEEK_00011 8267 3 Gut 0.21 protein_coding synonymous_variant LOW 1536G>C Arg512Arg
M0205054 GNFONEEK_00011 8283 3 Gut 0.21 protein_coding missense_variant MODERATE 1520T>C Leu507Pro
M0205055 GNFONEEK_00011 8321 3 Gut 0.21 protein_coding synonymous_variant LOW 1482A>G Glu494Glu
M0205056 GNFONEEK_00011 8387 4 Gut 0.29 protein_coding synonymous_variant LOW 1416A>G Ala472Ala
M0205057 GNFONEEK_00011 8545 3 Gut 0.21 protein_coding missense_variant MODERATE 1258A>C Ile420Leu
M0205058 GNFONEEK_00011 8585 3 Gut 0.21 protein_coding synonymous_variant LOW 1218A>G Val406Val
M0205059 GNFONEEK_00011 8593 3 Gut 0.21 protein_coding missense_variant MODERATE 1210A>G Thr404Ala
M0205060 GNFONEEK_00011 8599 3 Gut 0.21 protein_coding missense_variant MODERATE 1204G>A Ala402Thr
M0205061 GNFONEEK_00011 8602 3 Gut 0.21 protein_coding missense_variant MODERATE 1201A>G Lys401Glu
M0205062 GNFONEEK_00011 8605 3 Gut 0.21 protein_coding missense_variant MODERATE 1198C>A Arg400Ser
M0205063 GNFONEEK_00011 8608 3 Gut 0.21 protein_coding missense_variant MODERATE 1195T>C Cys399Arg
M0205064 GNFONEEK_00011 8612 3 Gut 0.21 protein_coding synonymous_variant LOW 1191A>T Thr397Thr
M0205065 GNFONEEK_00011 8617 3 Gut 0.21 protein_coding missense_variant MODERATE 1186G>C Glu396Gln
M0205066 GNFONEEK_00011 8623 3 Gut 0.21 protein_coding missense_variant MODERATE 1180A>C Lys394Gln
M0205067 GNFONEEK_00011 8627 3 Gut 0.21 protein_coding missense_variant MODERATE 1176T>A Asp392Glu
M0205068 GNFONEEK_00011 9545 7 Gut 0.50 protein_coding synonymous_variant LOW 258G>A Glu86Glu
M0205069 GNFONEEK_00011 9587 7 Gut 0.50 protein_coding synonymous_variant LOW 216A>G Lys72Lys
M0205070 GNFONEEK_00011 9596 7 Gut 0.50 protein_coding synonymous_variant LOW 207G>A Gly69Gly
M0205071 GNFONEEK_00011 9602 7 Gut 0.50 protein_coding synonymous_variant LOW 201T>G Pro67Pro
M0205072 GNFONEEK_00011 9686 6 Gut 0.43 protein_coding synonymous_variant LOW 117G>A Glu39Glu
M0205073 GNFONEEK_00012 9809 5 Gut 0.36 protein_coding missense_variant MODERATE 340G>A Ala114Thr
M0205074 GNFONEEK_00012 9825 6 Gut 0.43 protein_coding synonymous_variant LOW 324G>C Ala108Ala
M0205075 GNFONEEK_00012 9933 5 Gut 0.36 protein_coding synonymous_variant LOW 216C>T Asn72Asn
M0205076 GNFONEEK_00012 9936 6 Gut 0.43 protein_coding synonymous_variant LOW 213T>G Leu71Leu
M0205077 GNFONEEK_00012 9965 7 Gut 0.50 protein_coding missense_variant MODERATE 184T>C Cys62Arg
M0205078 GNFONEEK_00012 9994 6 Gut 0.43 protein_coding missense_variant MODERATE 155A>G Lys52Arg
M0205079 GNFONEEK_00012 10050 5 Gut 0.36 protein_coding synonymous_variant LOW 99A>G Gln33Gln
M0205080 GNFONEEK_00011 9605 6 Gut 0.43 protein_coding synonymous_variant LOW 198G>A Pro66Pro
M0205081 GNFONEEK_00011 9632 6 Gut 0.43 protein_coding synonymous_variant LOW 171T>G Val57Val
M0205082 GNFONEEK_00011 9638 6 Gut 0.43 protein_coding synonymous_variant LOW 165A>C Ser55Ser
M0205083 GNFONEEK_00011 9683 5 Gut 0.36 protein_coding synonymous_variant LOW 120C>A Val40Val
M0205084 GNFONEEK_00011 9698 5 Gut 0.36 protein_coding synonymous_variant LOW 105G>T Gly35Gly
M0205085 GNFONEEK_00011 9781 6 Gut 0.43 protein_coding synonymous_variant LOW 22A>C Arg8Arg
M0205086 GNFONEEK_00012 10071 4 Gut 0.29 protein_coding synonymous_variant LOW 78G>T Leu26Leu
M0205087 GNFONEEK_00012 10107 4 Gut 0.29 protein_coding synonymous_variant LOW 42G>A Thr14Thr
M0205088 GNFONEEK_00012 10142 4 Gut 0.29 protein_coding missense_variant MODERATE 7G>A Val3Ile
M0205089 GNFONEEK_00008 10157 5 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -3081G>T None
M0205090 GNFONEEK_00008 10158 5 Gut 0.36 protein_coding upstream_gene_variant MODIFIER -3082G>A None
M0205091 GNFONEEK_00013 10221 4 Gut 0.29 protein_coding synonymous_variant LOW 42C>T Phe14Phe
M0205092 GNFONEEK_00013 10224 4 Gut 0.29 protein_coding synonymous_variant LOW 45C>A Ile15Ile
M0205093 GNFONEEK_00013 10228 4 Gut 0.29 protein_coding missense_variant MODERATE 49G>A Gly17Ser
M0205094 GNFONEEK_00013 10287 4 Gut 0.29 protein_coding synonymous_variant LOW 108C>T Asp36Asp
M0205095 GNFONEEK_00013 10341 4 Gut 0.29 protein_coding synonymous_variant LOW 162A>T Ala54Ala
M0205096 GNFONEEK_00013 10367 4 Gut 0.29 protein_coding missense_variant MODERATE 188G>T Arg63Leu
M0205097 GNFONEEK_00008 10426 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3350T>A None
M0205098 GNFONEEK_00008 10437 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3361G>A None
M0205099 GNFONEEK_00008 10444 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3368C>T None
M0205100 GNFONEEK_00008 10478 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3402T>G None
M0205101 GNFONEEK_00008 10530 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3454A>C None
M0205102 GNFONEEK_00008 10547 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3471A>C None
M0205103 GNFONEEK_00008 10566 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3490C>T None
M0205104 GNFONEEK_00008 10567 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3491A>G None
M0205105 GNFONEEK_00008 10569 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3493G>C None
M0205106 GNFONEEK_00008 10608 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3532G>T None
M0205107 GNFONEEK_00008 10609 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3533T>G None
M0205108 GNFONEEK_00008 10612 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3536A>G None
M0205109 GNFONEEK_00008 10616 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3540C>G None
M0205110 GNFONEEK_00008 10621 4 Gut 0.29 protein_coding upstream_gene_variant MODIFIER -3545G>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
GNFONEEK_00009 9.A.13.1.1 100 2.1e-33 1 65 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.A Recognized transporters of unknown biochemical mechanism 9.A.13 The Colicin J Lysis (Cjl) Family