Annotation Categories of the Plasmid Cluster
Summary of the plasmid cluster
Basic Information about the Plasmid Cluster
Cluster Information |
Plasmid Cluster ID |
C1269 |
Reference Plasmid |
NZ_CP146094.1 |
Reference Plasmid Size |
341809 |
Reference Plasmid GC Content |
0.59 |
Reference Plasmid Mobility Type |
non-mobilizable |
Mutation sites in the plasmid cluster
The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..
mutid |
gname |
pos |
count |
tissue |
frequnt |
biotype |
consequence |
impact |
nucchange |
aachange |
M0115616 |
LHPNBJEB_00408 |
304569 |
43 |
Skin |
0.46 |
protein_coding |
synonymous_variant |
LOW |
558G>A |
Gln186Gln |
M0115617 |
LHPNBJEB_00408 |
304611 |
43 |
Skin |
0.46 |
protein_coding |
synonymous_variant |
LOW |
600G>A |
Leu200Leu |
M0115618 |
LHPNBJEB_00408 |
304614 |
43 |
Skin |
0.46 |
protein_coding |
synonymous_variant |
LOW |
603T>C |
Ala201Ala |
M0115619 |
LHPNBJEB_00408 |
304869 |
36 |
Skin |
0.39 |
protein_coding |
synonymous_variant |
LOW |
858G>A |
Val286Val |
M0115620 |
LHPNBJEB_00408 |
305034 |
43 |
Skin |
0.46 |
protein_coding |
synonymous_variant |
LOW |
1023C>T |
Gly341Gly |
M0115621 |
LHPNBJEB_00406 |
305108 |
42 |
Skin |
0.45 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1811A>G |
None |
M0115622 |
LHPNBJEB_00406 |
305133 |
42 |
Skin |
0.45 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1836C>T |
None |
M0115623 |
LHPNBJEB_00406 |
305187 |
42 |
Skin |
0.45 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1890C>A |
None |
M0115624 |
LHPNBJEB_00406 |
305219 |
42 |
Skin |
0.45 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1922C>G |
None |
M0115625 |
LHPNBJEB_00406 |
305251 |
42 |
Skin |
0.45 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1954T>C |
None |
M0115626 |
LHPNBJEB_00406 |
305253 |
42 |
Skin |
0.45 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1956A>G |
None |
M0115627 |
LHPNBJEB_00406 |
305344 |
39 |
Skin |
0.42 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2047G>C |
None |
M0115628 |
LHPNBJEB_00409 |
305603 |
44 |
Skin |
0.47 |
protein_coding |
synonymous_variant |
LOW |
183T>C |
Gly61Gly |
M0115629 |
LHPNBJEB_00409 |
305628 |
44 |
Skin |
0.47 |
protein_coding |
synonymous_variant |
LOW |
208C>A |
Arg70Arg |
M0115630 |
LHPNBJEB_00409 |
305825 |
41 |
Skin |
0.44 |
protein_coding |
synonymous_variant |
LOW |
405G>A |
Gly135Gly |
M0115631 |
LHPNBJEB_00409 |
305864 |
40 |
Skin |
0.43 |
protein_coding |
synonymous_variant |
LOW |
444T>C |
Thr148Thr |
M0115632 |
LHPNBJEB_00409 |
305925 |
40 |
Skin |
0.43 |
protein_coding |
missense_variant |
MODERATE |
505T>G |
Leu169Val |
M0115633 |
LHPNBJEB_00409 |
306113 |
38 |
Skin |
0.41 |
protein_coding |
synonymous_variant |
LOW |
693G>A |
Thr231Thr |
M0115634 |
LHPNBJEB_00409 |
306166 |
39 |
Skin |
0.42 |
protein_coding |
missense_variant |
MODERATE |
746T>C |
Val249Ala |
M0115635 |
LHPNBJEB_00409 |
306167 |
39 |
Skin |
0.42 |
protein_coding |
synonymous_variant |
LOW |
747A>G |
Val249Val |
M0115636 |
LHPNBJEB_00409 |
306170 |
39 |
Skin |
0.42 |
protein_coding |
synonymous_variant |
LOW |
750C>T |
Cys250Cys |
M0115637 |
LHPNBJEB_00409 |
306265 |
39 |
Skin |
0.42 |
protein_coding |
missense_variant |
MODERATE |
845T>C |
Val282Ala |
M0115638 |
LHPNBJEB_00409 |
306266 |
39 |
Skin |
0.42 |
protein_coding |
synonymous_variant |
LOW |
846T>A |
Val282Val |
M0115639 |
LHPNBJEB_00406 |
306320 |
39 |
Skin |
0.42 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3023C>T |
None |
M0115640 |
LHPNBJEB_00406 |
306334 |
39 |
Skin |
0.42 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3037G>A |
None |
M0115641 |
LHPNBJEB_00410 |
306482 |
39 |
Skin |
0.42 |
protein_coding |
synonymous_variant |
LOW |
168T>C |
Arg56Arg |
M0115642 |
LHPNBJEB_00410 |
306531 |
38 |
Skin |
0.41 |
protein_coding |
missense_variant |
MODERATE |
119A>C |
Asp40Ala |
M0115643 |
LHPNBJEB_00398 |
295555 |
10 |
Skin |
0.11 |
protein_coding |
missense_variant |
MODERATE |
2687C>T |
Ala896Val |
M0115644 |
LHPNBJEB_00398 |
295562 |
11 |
Skin |
0.12 |
protein_coding |
synonymous_variant |
LOW |
2694G>A |
Ser898Ser |
M0115645 |
LHPNBJEB_00398 |
295608 |
12 |
Skin |
0.13 |
protein_coding |
synonymous_variant |
LOW |
2740C>T |
Leu914Leu |
M0115646 |
LHPNBJEB_00398 |
295649 |
13 |
Skin |
0.14 |
protein_coding |
synonymous_variant |
LOW |
2781T>C |
Ala927Ala |
M0115647 |
LHPNBJEB_00398 |
295826 |
14 |
Skin |
0.15 |
protein_coding |
synonymous_variant |
LOW |
2958A>G |
Ala986Ala |
M0115648 |
LHPNBJEB_00398 |
295839 |
14 |
Skin |
0.15 |
protein_coding |
synonymous_variant |
LOW |
2971T>C |
Leu991Leu |
M0115649 |
LHPNBJEB_00398 |
295853 |
14 |
Skin |
0.15 |
protein_coding |
synonymous_variant |
LOW |
2985A>C |
Ser995Ser |
M0115650 |
LHPNBJEB_00398 |
295925 |
14 |
Skin |
0.15 |
protein_coding |
synonymous_variant |
LOW |
3057G>A |
Leu1019Leu |
M0115651 |
LHPNBJEB_00398 |
296005 |
14 |
Skin |
0.15 |
protein_coding |
missense_variant |
MODERATE |
3137G>A |
Gly1046Glu |
M0115652 |
LHPNBJEB_00399 |
296098 |
15 |
Skin |
0.16 |
protein_coding |
synonymous_variant |
LOW |
30T>C |
Ala10Ala |
M0115653 |
LHPNBJEB_00399 |
296278 |
16 |
Skin |
0.17 |
protein_coding |
synonymous_variant |
LOW |
210C>T |
Asn70Asn |
M0115654 |
LHPNBJEB_00399 |
296305 |
16 |
Skin |
0.17 |
protein_coding |
synonymous_variant |
LOW |
237G>A |
Thr79Thr |
M0115655 |
LHPNBJEB_00399 |
296413 |
17 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
345T>C |
Val115Val |
M0115656 |
LHPNBJEB_00399 |
296461 |
17 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
393T>G |
Leu131Leu |
M0115657 |
LHPNBJEB_00400 |
297007 |
17 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
435T>G |
Val145Val |
M0115658 |
LHPNBJEB_00400 |
297049 |
17 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
477G>A |
Pro159Pro |
M0115659 |
LHPNBJEB_00400 |
297115 |
17 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
543T>C |
Ala181Ala |
M0115660 |
LHPNBJEB_00400 |
297121 |
17 |
Skin |
0.18 |
protein_coding |
synonymous_variant |
LOW |
549T>C |
Pro183Pro |
M0115661 |
LHPNBJEB_00400 |
297424 |
19 |
Skin |
0.20 |
protein_coding |
synonymous_variant |
LOW |
852G>C |
Pro284Pro |
M0115662 |
LHPNBJEB_00400 |
297464 |
19 |
Skin |
0.20 |
protein_coding |
synonymous_variant |
LOW |
892T>C |
Leu298Leu |
M0115663 |
LHPNBJEB_00400 |
297484 |
19 |
Skin |
0.20 |
protein_coding |
synonymous_variant |
LOW |
912A>G |
Val304Val |
M0115664 |
LHPNBJEB_00400 |
297664 |
19 |
Skin |
0.20 |
protein_coding |
synonymous_variant |
LOW |
1092G>A |
Pro364Pro |
M0115665 |
LHPNBJEB_00400 |
297727 |
19 |
Skin |
0.20 |
protein_coding |
synonymous_variant |
LOW |
1155T>C |
Ile385Ile |
M0115666 |
LHPNBJEB_00400 |
297779 |
20 |
Skin |
0.22 |
protein_coding |
missense_variant |
MODERATE |
1207A>C |
Thr403Pro |
M0115667 |
LHPNBJEB_00400 |
297806 |
21 |
Skin |
0.23 |
protein_coding |
missense_variant |
MODERATE |
1234T>C |
Ser412Pro |
M0115668 |
LHPNBJEB_00400 |
297814 |
21 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1242G>T |
Thr414Thr |
M0115669 |
LHPNBJEB_00400 |
297817 |
21 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1245C>T |
Asp415Asp |
M0115670 |
LHPNBJEB_00400 |
297838 |
21 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
1266A>G |
Val422Val |
M0115671 |
LHPNBJEB_00400 |
297886 |
20 |
Skin |
0.22 |
protein_coding |
missense_variant |
MODERATE |
1314A>G |
Ile438Met |
M0115672 |
LHPNBJEB_00402 |
298085 |
21 |
Skin |
0.23 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-587T>C |
None |
M0115673 |
LHPNBJEB_00401 |
298206 |
21 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
261G>A |
Gln87Gln |
M0115674 |
LHPNBJEB_00401 |
298296 |
21 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
171T>C |
Asp57Asp |
M0115675 |
LHPNBJEB_00401 |
298311 |
21 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
156A>T |
Ser52Ser |
M0115676 |
LHPNBJEB_00401 |
298317 |
21 |
Skin |
0.23 |
protein_coding |
synonymous_variant |
LOW |
150G>A |
Lys50Lys |
M0115677 |
LHPNBJEB_00401 |
298418 |
21 |
Skin |
0.23 |
protein_coding |
missense_variant |
MODERATE |
49A>G |
Asn17Asp |
M0115678 |
LHPNBJEB_00401 |
298429 |
21 |
Skin |
0.23 |
protein_coding |
missense_variant |
MODERATE |
38A>G |
Asp13Gly |
M0115679 |
LHPNBJEB_00401 |
298527 |
21 |
Skin |
0.23 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-61T>C |
None |
M0115680 |
LHPNBJEB_00401 |
298584 |
21 |
Skin |
0.23 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-118G>A |
None |
M0115681 |
LHPNBJEB_00402 |
298733 |
23 |
Skin |
0.25 |
protein_coding |
missense_variant |
MODERATE |
62G>C |
Gly21Ala |
M0115682 |
LHPNBJEB_00402 |
298785 |
23 |
Skin |
0.25 |
protein_coding |
synonymous_variant |
LOW |
114C>T |
Cys38Cys |
M0115683 |
LHPNBJEB_00402 |
298882 |
24 |
Skin |
0.26 |
protein_coding |
missense_variant |
MODERATE |
211G>C |
Ala71Pro |
M0115684 |
LHPNBJEB_00402 |
299076 |
25 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
405T>C |
Gly135Gly |
M0115685 |
LHPNBJEB_00402 |
299079 |
25 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
408G>A |
Val136Val |
M0115686 |
LHPNBJEB_00402 |
299097 |
25 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
426A>G |
Leu142Leu |
M0115687 |
LHPNBJEB_00402 |
299100 |
25 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
429C>T |
Ile143Ile |
M0115688 |
LHPNBJEB_00402 |
299103 |
25 |
Skin |
0.27 |
protein_coding |
synonymous_variant |
LOW |
432G>T |
Ala144Ala |
M0115689 |
LHPNBJEB_00402 |
299136 |
26 |
Skin |
0.28 |
protein_coding |
synonymous_variant |
LOW |
465T>G |
Pro155Pro |
M0115690 |
LHPNBJEB_00402 |
299145 |
26 |
Skin |
0.28 |
protein_coding |
synonymous_variant |
LOW |
474C>A |
Thr158Thr |
M0115691 |
LHPNBJEB_00402 |
299146 |
26 |
Skin |
0.28 |
protein_coding |
missense_variant |
MODERATE |
475A>G |
Ser159Gly |
M0115692 |
LHPNBJEB_00402 |
299169 |
26 |
Skin |
0.28 |
protein_coding |
synonymous_variant |
LOW |
498C>T |
Ala166Ala |
M0115693 |
LHPNBJEB_00402 |
299307 |
27 |
Skin |
0.29 |
protein_coding |
synonymous_variant |
LOW |
636C>T |
Ile212Ile |
M0115694 |
LHPNBJEB_00402 |
299382 |
28 |
Skin |
0.30 |
protein_coding |
synonymous_variant |
LOW |
711C>T |
Tyr237Tyr |
M0115695 |
LHPNBJEB_00402 |
299463 |
28 |
Skin |
0.30 |
protein_coding |
synonymous_variant |
LOW |
792C>T |
Gly264Gly |
M0115696 |
LHPNBJEB_00402 |
299535 |
28 |
Skin |
0.30 |
protein_coding |
synonymous_variant |
LOW |
864C>A |
Ala288Ala |
M0115697 |
LHPNBJEB_00402 |
299620 |
28 |
Skin |
0.30 |
protein_coding |
missense_variant |
MODERATE |
949G>A |
Val317Ile |
M0115698 |
LHPNBJEB_00402 |
299628 |
30 |
Skin |
0.32 |
protein_coding |
synonymous_variant |
LOW |
957A>G |
Leu319Leu |
M0115699 |
LHPNBJEB_00402 |
300012 |
28 |
Skin |
0.30 |
protein_coding |
synonymous_variant |
LOW |
1341C>G |
Ala447Ala |
M0115700 |
LHPNBJEB_00402 |
300108 |
30 |
Skin |
0.32 |
protein_coding |
synonymous_variant |
LOW |
1437G>T |
Pro479Pro |
M0115701 |
LHPNBJEB_00402 |
300121 |
30 |
Skin |
0.32 |
protein_coding |
synonymous_variant |
LOW |
1450C>T |
Leu484Leu |
M0115702 |
LHPNBJEB_00402 |
300165 |
33 |
Skin |
0.35 |
protein_coding |
synonymous_variant |
LOW |
1494T>C |
Ala498Ala |
M0115703 |
LHPNBJEB_00402 |
300333 |
31 |
Skin |
0.33 |
protein_coding |
synonymous_variant |
LOW |
1662C>T |
Ala554Ala |
M0115704 |
LHPNBJEB_00402 |
300336 |
31 |
Skin |
0.33 |
protein_coding |
synonymous_variant |
LOW |
1665G>C |
Val555Val |
M0115705 |
LHPNBJEB_00402 |
300523 |
30 |
Skin |
0.32 |
protein_coding |
missense_variant |
MODERATE |
1852G>A |
Gly618Ser |
M0115706 |
LHPNBJEB_00398 |
294050 |
8 |
Skin |
0.09 |
protein_coding |
synonymous_variant |
LOW |
1182G>A |
Leu394Leu |
M0115707 |
LHPNBJEB_00398 |
294153 |
8 |
Skin |
0.09 |
protein_coding |
missense_variant |
MODERATE |
1285A>G |
Asn429Asp |
M0115708 |
LHPNBJEB_00398 |
294159 |
8 |
Skin |
0.09 |
protein_coding |
missense_variant |
MODERATE |
1291G>A |
Ala431Thr |
M0115709 |
LHPNBJEB_00398 |
294296 |
9 |
Skin |
0.10 |
protein_coding |
synonymous_variant |
LOW |
1428A>G |
Glu476Glu |
M0115710 |
LHPNBJEB_00398 |
294326 |
10 |
Skin |
0.11 |
protein_coding |
synonymous_variant |
LOW |
1458T>C |
Ala486Ala |
M0115711 |
LHPNBJEB_00398 |
294344 |
10 |
Skin |
0.11 |
protein_coding |
synonymous_variant |
LOW |
1476A>G |
Leu492Leu |
M0115712 |
LHPNBJEB_00398 |
294383 |
10 |
Skin |
0.11 |
protein_coding |
synonymous_variant |
LOW |
1515G>T |
Leu505Leu |
M0115713 |
LHPNBJEB_00398 |
294435 |
10 |
Skin |
0.11 |
protein_coding |
missense_variant |
MODERATE |
1567A>C |
Ile523Leu |
M0115714 |
LHPNBJEB_00398 |
294447 |
10 |
Skin |
0.11 |
protein_coding |
missense_variant |
MODERATE |
1579C>T |
Leu527Phe |
M0115715 |
LHPNBJEB_00398 |
294449 |
10 |
Skin |
0.11 |
protein_coding |
synonymous_variant |
LOW |
1581T>G |
Leu527Leu |
M0115716 |
LHPNBJEB_00398 |
294453 |
10 |
Skin |
0.11 |
protein_coding |
missense_variant |
MODERATE |
1585G>A |
Ala529Thr |
M0115717 |
LHPNBJEB_00398 |
294458 |
10 |
Skin |
0.11 |
protein_coding |
synonymous_variant |
LOW |
1590T>C |
Arg530Arg |
M0115718 |
LHPNBJEB_00398 |
294686 |
11 |
Skin |
0.12 |
protein_coding |
synonymous_variant |
LOW |
1818G>A |
Pro606Pro |
M0115719 |
LHPNBJEB_00398 |
294746 |
11 |
Skin |
0.12 |
protein_coding |
synonymous_variant |
LOW |
1878T>C |
Gly626Gly |
M0115720 |
LHPNBJEB_00398 |
294758 |
11 |
Skin |
0.12 |
protein_coding |
synonymous_variant |
LOW |
1890T>C |
Ser630Ser |
M0115721 |
LHPNBJEB_00398 |
294761 |
11 |
Skin |
0.12 |
protein_coding |
synonymous_variant |
LOW |
1893A>G |
Glu631Glu |
M0115722 |
LHPNBJEB_00398 |
294773 |
11 |
Skin |
0.12 |
protein_coding |
synonymous_variant |
LOW |
1905T>C |
Gly635Gly |
M0115723 |
LHPNBJEB_00398 |
294782 |
11 |
Skin |
0.12 |
protein_coding |
synonymous_variant |
LOW |
1914T>C |
Pro638Pro |
M0115724 |
LHPNBJEB_00398 |
294788 |
11 |
Skin |
0.12 |
protein_coding |
synonymous_variant |
LOW |
1920A>G |
Ser640Ser |
M0115725 |
LHPNBJEB_00403 |
301392 |
51 |
Skin |
0.55 |
protein_coding |
synonymous_variant |
LOW |
180A>G |
Val60Val |
M0115726 |
LHPNBJEB_00403 |
301604 |
47 |
Skin |
0.51 |
protein_coding |
missense_variant |
MODERATE |
392C>T |
Thr131Ile |
M0115727 |
LHPNBJEB_00403 |
301681 |
47 |
Skin |
0.51 |
protein_coding |
missense_variant |
MODERATE |
469C>T |
Arg157Cys |
M0115728 |
LHPNBJEB_00404 |
301722 |
53 |
Skin |
0.57 |
protein_coding |
synonymous_variant |
LOW |
15A>C |
Thr5Thr |
M0115729 |
LHPNBJEB_00404 |
301746 |
47 |
Skin |
0.51 |
protein_coding |
synonymous_variant |
LOW |
39T>G |
Ala13Ala |
M0115730 |
LHPNBJEB_00404 |
301749 |
47 |
Skin |
0.51 |
protein_coding |
synonymous_variant |
LOW |
42C>T |
Pro14Pro |
M0115731 |
LHPNBJEB_00404 |
301884 |
53 |
Skin |
0.57 |
protein_coding |
synonymous_variant |
LOW |
177T>C |
Phe59Phe |
M0115732 |
LHPNBJEB_00404 |
301885 |
53 |
Skin |
0.57 |
protein_coding |
missense_variant |
MODERATE |
178A>G |
Asn60Asp |
M0115733 |
LHPNBJEB_00404 |
301908 |
47 |
Skin |
0.51 |
protein_coding |
synonymous_variant |
LOW |
201G>A |
Glu67Glu |
M0115734 |
LHPNBJEB_00404 |
301917 |
53 |
Skin |
0.57 |
protein_coding |
synonymous_variant |
LOW |
210T>C |
Asp70Asp |
M0115735 |
LHPNBJEB_00401 |
302121 |
48 |
Skin |
0.52 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3655T>G |
None |
M0115736 |
LHPNBJEB_00401 |
302252 |
47 |
Skin |
0.51 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3786T>G |
None |
M0115737 |
LHPNBJEB_00405 |
302359 |
48 |
Skin |
0.52 |
protein_coding |
missense_variant |
MODERATE |
90A>C |
Lys30Asn |
M0115738 |
LHPNBJEB_00405 |
302542 |
46 |
Skin |
0.49 |
protein_coding |
stop_gained |
HIGH |
273C>G |
Tyr91* |
M0115739 |
LHPNBJEB_00405 |
302568 |
46 |
Skin |
0.49 |
protein_coding |
missense_variant |
MODERATE |
299T>C |
Met100Thr |
M0115740 |
LHPNBJEB_00405 |
302578 |
46 |
Skin |
0.49 |
protein_coding |
synonymous_variant |
LOW |
309G>A |
Ala103Ala |
M0115741 |
LHPNBJEB_00405 |
302614 |
46 |
Skin |
0.49 |
protein_coding |
synonymous_variant |
LOW |
345G>A |
Gln115Gln |
M0115742 |
LHPNBJEB_00405 |
302615 |
46 |
Skin |
0.49 |
protein_coding |
missense_variant |
MODERATE |
346C>G |
Leu116Val |
M0115743 |
LHPNBJEB_00405 |
302619 |
46 |
Skin |
0.49 |
protein_coding |
stop_gained |
HIGH |
350G>A |
Trp117* |
M0115744 |
LHPNBJEB_00405 |
302642 |
48 |
Skin |
0.52 |
protein_coding |
missense_variant |
MODERATE |
373C>T |
Leu125Phe |
M0115745 |
LHPNBJEB_00405 |
302943 |
48 |
Skin |
0.52 |
protein_coding |
missense_variant |
MODERATE |
674A>G |
Asp225Gly |
M0115746 |
LHPNBJEB_00401 |
303041 |
48 |
Skin |
0.52 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4575T>C |
None |
M0115747 |
LHPNBJEB_00401 |
303044 |
48 |
Skin |
0.52 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4578A>G |
None |
M0115748 |
LHPNBJEB_00401 |
303084 |
3 |
Skin |
0.03 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4618A>C |
None |
M0115749 |
LHPNBJEB_00406 |
303205 |
45 |
Skin |
0.48 |
protein_coding |
synonymous_variant |
LOW |
93T>C |
Val31Val |
M0115750 |
LHPNBJEB_00406 |
303230 |
43 |
Skin |
0.46 |
protein_coding |
missense_variant |
MODERATE |
68C>T |
Thr23Met |
M0115751 |
LHPNBJEB_00401 |
303320 |
44 |
Skin |
0.47 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4854T>C |
None |
M0115752 |
LHPNBJEB_00401 |
303323 |
44 |
Skin |
0.47 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4857G>A |
None |
M0115753 |
LHPNBJEB_00401 |
303326 |
44 |
Skin |
0.47 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4860T>C |
None |
M0115754 |
LHPNBJEB_00401 |
303331 |
44 |
Skin |
0.47 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4865A>G |
None |
M0115755 |
LHPNBJEB_00401 |
303334 |
44 |
Skin |
0.47 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4868T>C |
None |
M0115756 |
LHPNBJEB_00401 |
303388 |
44 |
Skin |
0.47 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4922A>C |
None |
M0115757 |
LHPNBJEB_00401 |
303397 |
44 |
Skin |
0.47 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4931A>G |
None |
M0115758 |
LHPNBJEB_00407 |
303425 |
43 |
Skin |
0.46 |
protein_coding |
synonymous_variant |
LOW |
483G>A |
Val161Val |
M0115759 |
LHPNBJEB_00407 |
303431 |
43 |
Skin |
0.46 |
protein_coding |
synonymous_variant |
LOW |
477C>T |
Asp159Asp |
M0115760 |
LHPNBJEB_00407 |
303458 |
42 |
Skin |
0.45 |
protein_coding |
synonymous_variant |
LOW |
450A>G |
Gln150Gln |
M0115761 |
LHPNBJEB_00406 |
306705 |
4 |
Skin |
0.04 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3408T>C |
None |
M0115762 |
LHPNBJEB_00411 |
306767 |
4 |
Skin |
0.04 |
protein_coding |
missense_variant |
MODERATE |
23C>G |
Pro8Arg |
M0115763 |
LHPNBJEB_00411 |
306780 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
36A>G |
Thr12Thr |
M0115764 |
LHPNBJEB_00411 |
306781 |
4 |
Skin |
0.04 |
protein_coding |
missense_variant |
MODERATE |
37C>G |
Leu13Val |
M0115765 |
LHPNBJEB_00411 |
306948 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
204G>A |
Ala68Ala |
M0115766 |
LHPNBJEB_00411 |
307032 |
4 |
Skin |
0.04 |
protein_coding |
missense_variant |
MODERATE |
288G>C |
Gln96His |
M0115767 |
LHPNBJEB_00411 |
307061 |
4 |
Skin |
0.04 |
protein_coding |
missense_variant |
MODERATE |
317A>G |
Asp106Gly |
M0115768 |
LHPNBJEB_00411 |
307095 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
351C>T |
Cys117Cys |
M0115769 |
LHPNBJEB_00411 |
307131 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
387A>G |
Pro129Pro |
M0115770 |
LHPNBJEB_00411 |
307132 |
4 |
Skin |
0.04 |
protein_coding |
missense_variant |
MODERATE |
388G>A |
Val130Met |
M0115771 |
LHPNBJEB_00412 |
307473 |
4 |
Skin |
0.04 |
protein_coding |
missense_variant |
MODERATE |
1906A>G |
Arg636Gly |
M0115772 |
LHPNBJEB_00412 |
307514 |
4 |
Skin |
0.04 |
protein_coding |
missense_variant |
MODERATE |
1865C>T |
Ala622Val |
M0115773 |
LHPNBJEB_00412 |
307544 |
4 |
Skin |
0.04 |
protein_coding |
missense_variant |
MODERATE |
1835A>G |
Gln612Arg |
M0115774 |
LHPNBJEB_00412 |
307762 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
1617C>T |
Ser539Ser |
M0115775 |
LHPNBJEB_00412 |
307867 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
1512T>C |
Tyr504Tyr |
M0115776 |
LHPNBJEB_00412 |
307954 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
1425G>A |
Leu475Leu |
M0115777 |
LHPNBJEB_00412 |
308018 |
4 |
Skin |
0.04 |
protein_coding |
missense_variant |
MODERATE |
1361A>G |
Gln454Arg |
M0115778 |
LHPNBJEB_00412 |
308035 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
1344C>G |
Pro448Pro |
M0115779 |
LHPNBJEB_00412 |
308038 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
1341G>A |
Glu447Glu |
M0115780 |
LHPNBJEB_00412 |
308048 |
4 |
Skin |
0.04 |
protein_coding |
missense_variant |
MODERATE |
1331T>C |
Ile444Thr |
M0115781 |
LHPNBJEB_00412 |
308245 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1134C>T |
Ser378Ser |
M0115782 |
LHPNBJEB_00412 |
308266 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1113G>T |
Val371Val |
M0115783 |
LHPNBJEB_00412 |
308278 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1101G>A |
Pro367Pro |
M0115784 |
LHPNBJEB_00412 |
308296 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1083C>G |
Leu361Leu |
M0115785 |
LHPNBJEB_00412 |
308332 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1047C>G |
Thr349Thr |
M0115786 |
LHPNBJEB_00412 |
308350 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1029T>C |
Gly343Gly |
M0115787 |
LHPNBJEB_00412 |
308359 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1020G>A |
Gln340Gln |
M0115788 |
LHPNBJEB_00412 |
308377 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1002G>C |
Thr334Thr |
M0115789 |
LHPNBJEB_00412 |
308424 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
955T>C |
Leu319Leu |
M0115790 |
LHPNBJEB_00412 |
308455 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
924T>G |
Leu308Leu |
M0115791 |
LHPNBJEB_00412 |
308458 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
921T>C |
Tyr307Tyr |
M0115792 |
LHPNBJEB_00412 |
308479 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
900G>A |
Gln300Gln |
M0115793 |
LHPNBJEB_00412 |
308527 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
852T>A |
Gly284Gly |
M0115794 |
LHPNBJEB_00412 |
308569 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
810A>G |
Pro270Pro |
M0115795 |
LHPNBJEB_00412 |
308572 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
807G>A |
Pro269Pro |
M0115796 |
LHPNBJEB_00412 |
308605 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
774G>A |
Gln258Gln |
M0115797 |
LHPNBJEB_00412 |
308620 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
759G>T |
Leu253Leu |
M0115798 |
LHPNBJEB_00412 |
308668 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
711T>C |
Gly237Gly |
M0115799 |
LHPNBJEB_00412 |
308673 |
3 |
Skin |
0.03 |
protein_coding |
missense_variant |
MODERATE |
706C>T |
Leu236Phe |
M0115800 |
LHPNBJEB_00412 |
308735 |
3 |
Skin |
0.03 |
protein_coding |
missense_variant |
MODERATE |
644C>T |
Pro215Leu |
M0115801 |
LHPNBJEB_00412 |
308767 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
612C>T |
Pro204Pro |
M0115802 |
LHPNBJEB_00412 |
308773 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
606C>A |
Pro202Pro |
M0115803 |
LHPNBJEB_00412 |
308875 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
504G>A |
Glu168Glu |
M0115804 |
LHPNBJEB_00412 |
308971 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
408C>A |
Pro136Pro |
M0115805 |
LHPNBJEB_00412 |
309001 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
378T>C |
Ile126Ile |
M0115806 |
LHPNBJEB_00412 |
309182 |
3 |
Skin |
0.03 |
protein_coding |
missense_variant |
MODERATE |
197C>T |
Ala66Val |
M0115807 |
LHPNBJEB_00412 |
309259 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
120T>C |
Phe40Phe |
M0115808 |
LHPNBJEB_00412 |
309298 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
81C>T |
Gly27Gly |
M0115809 |
LHPNBJEB_00412 |
309307 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
72C>T |
Asp24Asp |
M0115810 |
LHPNBJEB_00410 |
309402 |
3 |
Skin |
0.03 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2753A>G |
None |
M0115811 |
LHPNBJEB_00410 |
309479 |
3 |
Skin |
0.03 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2830G>A |
None |
M0115812 |
LHPNBJEB_00410 |
309537 |
4 |
Skin |
0.04 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2888C>T |
None |
M0115813 |
LHPNBJEB_00410 |
309548 |
3 |
Skin |
0.03 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2899G>A |
None |
M0115814 |
LHPNBJEB_00410 |
309593 |
3 |
Skin |
0.03 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-2944G>A |
None |
M0115815 |
LHPNBJEB_00402 |
300549 |
36 |
Skin |
0.39 |
protein_coding |
synonymous_variant |
LOW |
1878A>G |
Leu626Leu |
M0115816 |
LHPNBJEB_00402 |
300567 |
31 |
Skin |
0.33 |
protein_coding |
synonymous_variant |
LOW |
1896G>A |
Ser632Ser |
M0115817 |
LHPNBJEB_00402 |
300580 |
37 |
Skin |
0.40 |
protein_coding |
missense_variant |
MODERATE |
1909T>G |
Ser637Ala |
M0115818 |
LHPNBJEB_00402 |
300658 |
36 |
Skin |
0.39 |
protein_coding |
synonymous_variant |
LOW |
1987C>T |
Leu663Leu |
M0115819 |
LHPNBJEB_00402 |
301140 |
48 |
Skin |
0.52 |
protein_coding |
synonymous_variant |
LOW |
2469A>C |
Gly823Gly |
M0115820 |
LHPNBJEB_00405 |
302395 |
44 |
Skin |
0.47 |
protein_coding |
synonymous_variant |
LOW |
126G>A |
Ala42Ala |
M0115821 |
LHPNBJEB_00405 |
302435 |
44 |
Skin |
0.47 |
protein_coding |
missense_variant |
MODERATE |
166G>A |
Val56Ile |
M0115822 |
LHPNBJEB_00405 |
302662 |
46 |
Skin |
0.49 |
protein_coding |
synonymous_variant |
LOW |
393T>C |
Cys131Cys |
M0115823 |
LHPNBJEB_00405 |
302793 |
45 |
Skin |
0.48 |
protein_coding |
missense_variant |
MODERATE |
524T>A |
Leu175Gln |
M0115824 |
LHPNBJEB_00401 |
303096 |
44 |
Skin |
0.47 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4630G>A |
None |
M0115825 |
LHPNBJEB_00401 |
303345 |
43 |
Skin |
0.46 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4879C>G |
None |
M0115826 |
LHPNBJEB_00401 |
303359 |
43 |
Skin |
0.46 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-4893C>A |
None |
M0115827 |
LHPNBJEB_00407 |
303485 |
41 |
Skin |
0.44 |
protein_coding |
synonymous_variant |
LOW |
423T>C |
Asp141Asp |
M0115828 |
LHPNBJEB_00407 |
303509 |
41 |
Skin |
0.44 |
protein_coding |
synonymous_variant |
LOW |
399C>T |
Ala133Ala |
M0115829 |
LHPNBJEB_00407 |
303515 |
41 |
Skin |
0.44 |
protein_coding |
synonymous_variant |
LOW |
393T>C |
Asp131Asp |
M0115830 |
LHPNBJEB_00407 |
303518 |
41 |
Skin |
0.44 |
protein_coding |
synonymous_variant |
LOW |
390A>G |
Arg130Arg |
M0115831 |
LHPNBJEB_00407 |
303519 |
41 |
Skin |
0.44 |
protein_coding |
missense_variant |
MODERATE |
389G>T |
Arg130Ile |
M0115832 |
LHPNBJEB_00407 |
303535 |
41 |
Skin |
0.44 |
protein_coding |
synonymous_variant |
LOW |
373T>C |
Leu125Leu |
M0115833 |
LHPNBJEB_00407 |
303539 |
41 |
Skin |
0.44 |
protein_coding |
synonymous_variant |
LOW |
369C>T |
Tyr123Tyr |
M0115834 |
LHPNBJEB_00407 |
303563 |
40 |
Skin |
0.43 |
protein_coding |
synonymous_variant |
LOW |
345C>T |
His115His |
M0115835 |
LHPNBJEB_00407 |
303575 |
40 |
Skin |
0.43 |
protein_coding |
synonymous_variant |
LOW |
333G>T |
Val111Val |
M0115836 |
LHPNBJEB_00407 |
303581 |
40 |
Skin |
0.43 |
protein_coding |
synonymous_variant |
LOW |
327C>A |
Pro109Pro |
M0115837 |
LHPNBJEB_00407 |
303593 |
40 |
Skin |
0.43 |
protein_coding |
synonymous_variant |
LOW |
315T>C |
Val105Val |
M0115838 |
LHPNBJEB_00407 |
303596 |
40 |
Skin |
0.43 |
protein_coding |
synonymous_variant |
LOW |
312G>T |
Ser104Ser |
M0115839 |
LHPNBJEB_00407 |
303620 |
30 |
Skin |
0.32 |
protein_coding |
synonymous_variant |
LOW |
288C>T |
Asn96Asn |
M0115840 |
LHPNBJEB_00407 |
303635 |
30 |
Skin |
0.32 |
protein_coding |
synonymous_variant |
LOW |
273T>C |
Asp91Asp |
M0115841 |
LHPNBJEB_00407 |
303638 |
30 |
Skin |
0.32 |
protein_coding |
synonymous_variant |
LOW |
270T>C |
Ser90Ser |
M0115842 |
LHPNBJEB_00402 |
300520 |
3 |
Skin |
0.03 |
protein_coding |
missense_variant |
MODERATE |
1849G>A |
Gly617Ser |
M0115843 |
LHPNBJEB_00402 |
300555 |
5 |
Skin |
0.05 |
protein_coding |
synonymous_variant |
LOW |
1884C>T |
Asn628Asn |
M0115844 |
LHPNBJEB_00402 |
300594 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1923G>A |
Arg641Arg |
M0115845 |
LHPNBJEB_00405 |
302494 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
225A>G |
Leu75Leu |
M0115846 |
LHPNBJEB_00402 |
301182 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2511G>C |
Ala837Ala |
M0115847 |
LHPNBJEB_00402 |
301185 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
2514T>C |
Asp838Asp |
M0115848 |
LHPNBJEB_00402 |
301194 |
6 |
Skin |
0.06 |
protein_coding |
missense_variant |
MODERATE |
2523T>A |
His841Gln |
M0115849 |
LHPNBJEB_00403 |
301257 |
7 |
Skin |
0.08 |
protein_coding |
synonymous_variant |
LOW |
45A>G |
Lys15Lys |
M0115850 |
LHPNBJEB_00403 |
301278 |
7 |
Skin |
0.08 |
protein_coding |
synonymous_variant |
LOW |
66A>G |
Gln22Gln |
M0115851 |
LHPNBJEB_00403 |
301284 |
7 |
Skin |
0.08 |
protein_coding |
synonymous_variant |
LOW |
72T>C |
Gly24Gly |
M0115852 |
LHPNBJEB_00403 |
301369 |
7 |
Skin |
0.08 |
protein_coding |
missense_variant |
MODERATE |
157T>G |
Ser53Ala |
M0115853 |
LHPNBJEB_00403 |
301408 |
7 |
Skin |
0.08 |
protein_coding |
synonymous_variant |
LOW |
196T>C |
Leu66Leu |
M0115854 |
LHPNBJEB_00403 |
301416 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
204A>G |
Gly68Gly |
M0115855 |
LHPNBJEB_00403 |
301449 |
7 |
Skin |
0.08 |
protein_coding |
synonymous_variant |
LOW |
237T>C |
Asp79Asp |
M0115856 |
LHPNBJEB_00403 |
301452 |
7 |
Skin |
0.08 |
protein_coding |
synonymous_variant |
LOW |
240A>C |
Val80Val |
M0115857 |
LHPNBJEB_00403 |
301488 |
7 |
Skin |
0.08 |
protein_coding |
synonymous_variant |
LOW |
276C>T |
Asp92Asp |
M0115858 |
LHPNBJEB_00403 |
301557 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
345C>T |
Asp115Asp |
M0115859 |
LHPNBJEB_00403 |
301579 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
367C>T |
Leu123Leu |
M0115860 |
LHPNBJEB_00403 |
301612 |
6 |
Skin |
0.06 |
protein_coding |
missense_variant |
MODERATE |
400A>G |
Asn134Asp |
M0115861 |
LHPNBJEB_00403 |
301615 |
6 |
Skin |
0.06 |
protein_coding |
missense_variant |
MODERATE |
403A>G |
Lys135Glu |
M0115862 |
LHPNBJEB_00403 |
301632 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
420T>C |
Thr140Thr |
M0115863 |
LHPNBJEB_00403 |
301638 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
426A>C |
Ala142Ala |
M0115864 |
LHPNBJEB_00403 |
301641 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
429G>A |
Val143Val |
M0115865 |
LHPNBJEB_00403 |
301661 |
7 |
Skin |
0.08 |
protein_coding |
missense_variant |
MODERATE |
449A>G |
Asn150Ser |
M0115866 |
LHPNBJEB_00404 |
301755 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
48A>C |
Gly16Gly |
M0115867 |
LHPNBJEB_00404 |
301764 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
57G>A |
Leu19Leu |
M0115868 |
LHPNBJEB_00404 |
301776 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
69A>C |
Ala23Ala |
M0115869 |
LHPNBJEB_00404 |
301890 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
183T>C |
Ser61Ser |
M0115870 |
LHPNBJEB_00404 |
301893 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
186A>C |
Leu62Leu |
M0115871 |
LHPNBJEB_00404 |
301899 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
192A>G |
Glu64Glu |
M0115872 |
LHPNBJEB_00404 |
301930 |
6 |
Skin |
0.06 |
protein_coding |
synonymous_variant |
LOW |
223C>A |
Arg75Arg |
M0115873 |
LHPNBJEB_00401 |
302097 |
6 |
Skin |
0.06 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-3631G>A |
None |
M0115874 |
LHPNBJEB_00406 |
305287 |
5 |
Skin |
0.05 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1990G>T |
None |
M0115875 |
LHPNBJEB_00406 |
305295 |
5 |
Skin |
0.05 |
protein_coding |
upstream_gene_variant |
MODIFIER |
-1998C>T |
None |
M0115876 |
LHPNBJEB_00402 |
300951 |
5 |
Skin |
0.05 |
protein_coding |
synonymous_variant |
LOW |
2280C>T |
Gly760Gly |
M0115877 |
LHPNBJEB_00398 |
295040 |
10 |
Skin |
0.11 |
protein_coding |
synonymous_variant |
LOW |
2172T>A |
Leu724Leu |
M0115878 |
LHPNBJEB_00398 |
295121 |
10 |
Skin |
0.11 |
protein_coding |
synonymous_variant |
LOW |
2253A>G |
Leu751Leu |
M0115879 |
LHPNBJEB_00398 |
295334 |
10 |
Skin |
0.11 |
protein_coding |
synonymous_variant |
LOW |
2466G>A |
Arg822Arg |
M0115880 |
LHPNBJEB_00398 |
295362 |
10 |
Skin |
0.11 |
protein_coding |
missense_variant |
MODERATE |
2494A>G |
Arg832Gly |
M0115881 |
LHPNBJEB_00390 |
288300 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
6A>C |
Pro2Pro |
M0115882 |
LHPNBJEB_00397 |
292327 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
588A>G |
Leu196Leu |
M0115883 |
LHPNBJEB_00397 |
292528 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
789G>T |
Gly263Gly |
M0115884 |
LHPNBJEB_00397 |
292741 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1002A>G |
Pro334Pro |
M0115885 |
LHPNBJEB_00398 |
293057 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
189G>A |
Gln63Gln |
M0115886 |
LHPNBJEB_00398 |
293171 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
303A>C |
Thr101Thr |
M0115887 |
LHPNBJEB_00398 |
293252 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
384G>T |
Thr128Thr |
M0115888 |
LHPNBJEB_00398 |
293363 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
495G>T |
Thr165Thr |
M0115889 |
LHPNBJEB_00398 |
293385 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
517T>C |
Leu173Leu |
M0115890 |
LHPNBJEB_00398 |
293414 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
546C>T |
Gly182Gly |
M0115891 |
LHPNBJEB_00398 |
293667 |
4 |
Skin |
0.04 |
protein_coding |
missense_variant |
MODERATE |
799A>C |
Ile267Leu |
M0115892 |
LHPNBJEB_00398 |
293813 |
5 |
Skin |
0.05 |
protein_coding |
synonymous_variant |
LOW |
945A>G |
Leu315Leu |
M0115893 |
LHPNBJEB_00398 |
293855 |
5 |
Skin |
0.05 |
protein_coding |
synonymous_variant |
LOW |
987G>A |
Pro329Pro |
M0115894 |
LHPNBJEB_00398 |
293858 |
5 |
Skin |
0.05 |
protein_coding |
synonymous_variant |
LOW |
990A>G |
Gln330Gln |
M0115895 |
LHPNBJEB_00402 |
300612 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1941G>C |
Ala647Ala |
M0115896 |
LHPNBJEB_00402 |
300615 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1944G>C |
Val648Val |
M0115897 |
LHPNBJEB_00402 |
300621 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1950T>C |
Asp650Asp |
M0115898 |
LHPNBJEB_00402 |
300643 |
3 |
Skin |
0.03 |
protein_coding |
missense_variant |
MODERATE |
1972G>A |
Ala658Thr |
M0115899 |
LHPNBJEB_00402 |
300651 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1980T>C |
Ile660Ile |
M0115900 |
LHPNBJEB_00402 |
300666 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1995G>A |
Gln665Gln |
M0115901 |
LHPNBJEB_00402 |
300684 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
2013G>A |
Ala671Ala |
M0115902 |
LHPNBJEB_00402 |
300768 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2097C>T |
Pro699Pro |
M0115903 |
LHPNBJEB_00402 |
300801 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2130A>G |
Lys710Lys |
M0115904 |
LHPNBJEB_00402 |
300852 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2181G>A |
Pro727Pro |
M0115905 |
LHPNBJEB_00402 |
300867 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2196C>A |
Ala732Ala |
M0115906 |
LHPNBJEB_00402 |
300882 |
5 |
Skin |
0.05 |
protein_coding |
synonymous_variant |
LOW |
2211C>G |
Ala737Ala |
M0115907 |
LHPNBJEB_00402 |
300924 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2253A>G |
Val751Val |
M0115908 |
LHPNBJEB_00402 |
300936 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2265G>C |
Ser755Ser |
M0115909 |
LHPNBJEB_00402 |
300981 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2310G>C |
Ala770Ala |
M0115910 |
LHPNBJEB_00402 |
301053 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2382T>G |
Ala794Ala |
M0115911 |
LHPNBJEB_00402 |
301059 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2388C>G |
Val796Val |
M0115912 |
LHPNBJEB_00402 |
301071 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2400A>C |
Ala800Ala |
M0115913 |
LHPNBJEB_00402 |
301074 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2403C>T |
Tyr801Tyr |
M0115914 |
LHPNBJEB_00402 |
301077 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2406T>C |
Gly802Gly |
M0115915 |
LHPNBJEB_00402 |
301080 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2409G>C |
Val803Val |
M0115916 |
LHPNBJEB_00402 |
301086 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2415G>A |
Leu805Leu |
M0115917 |
LHPNBJEB_00402 |
301104 |
5 |
Skin |
0.05 |
protein_coding |
synonymous_variant |
LOW |
2433T>C |
Ala811Ala |
M0115918 |
LHPNBJEB_00402 |
301110 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2439G>A |
Ala813Ala |
M0115919 |
LHPNBJEB_00402 |
301116 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2445G>A |
Ala815Ala |
M0115920 |
LHPNBJEB_00402 |
301122 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2451C>T |
Ser817Ser |
M0115921 |
LHPNBJEB_00402 |
301143 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2472C>T |
Asn824Asn |
M0115922 |
LHPNBJEB_00402 |
301152 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2481C>T |
Arg827Arg |
M0115923 |
LHPNBJEB_00402 |
301155 |
4 |
Skin |
0.04 |
protein_coding |
synonymous_variant |
LOW |
2484G>T |
Leu828Leu |
M0115924 |
LHPNBJEB_00402 |
299979 |
3 |
Skin |
0.03 |
protein_coding |
synonymous_variant |
LOW |
1308G>A |
Thr436Thr |
Analysis of virulence factors contributing to bacterial pathogenicity
This table presents virulence factors identified within the plasmid cluster.
Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.
Gene Name |
vf_gene_id |
vf_name |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
vf_category |
gene_description |
condition |
Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact
This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.
Gene Name |
compound |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
group |
LHPNBJEB_00352 |
Cobalt (Co), Nickel (Ni) |
71.3 |
7.1e-139 |
19 |
415 |
0.9566 |
0.9498 |
experiment |
LHPNBJEB_00353 |
Cobalt (Co), Nickel (Ni) |
73.9 |
1.8e-144 |
1 |
390 |
1.0128 |
1.0000 |
experiment |
LHPNBJEB_00354 |
Cobalt (Co), Nickel (Ni) |
88.2 |
0 |
1 |
1076 |
0.9981 |
1.0000 |
experiment |
LHPNBJEB_00356 |
Chromium (Cr) |
88.2 |
6e-199 |
9 |
402 |
0.9925 |
0.9950 |
experiment |
LHPNBJEB_00357 |
Chromium (Cr) |
83.2 |
1.1e-94 |
1 |
196 |
1.0000 |
0.9949 |
experiment |
LHPNBJEB_00358 |
Chromium (Cr) |
85.7 |
1.4e-71 |
1 |
140 |
0.9150 |
1.0000 |
experiment |
LHPNBJEB_00402 |
Copper (Cu), Gold (Au) |
84 |
0 |
92 |
836 |
0.8859 |
0.9777 |
experiment |
LHPNBJEB_00403 |
Gold (Au) |
78.1 |
2.2e-64 |
1 |
155 |
0.9748 |
1.0065 |
experiment |
LHPNBJEB_00428 |
Lead (Pb) |
79.4 |
0 |
1 |
800 |
1.0000 |
1.0013 |
experiment |
LHPNBJEB_00350 |
Cobalt (Co), Nickel (Ni) |
81.8 |
4e-61 |
1 |
148 |
1.0000 |
1.0000 |
prediction |
LHPNBJEB_00352 |
Cobalt (Co), Nickel (Ni) |
71.5 |
3.3e-137 |
19 |
415 |
0.9566 |
0.9498 |
prediction |
LHPNBJEB_00353 |
Cobalt (Co), Nickel (Ni) |
73.9 |
4.2e-142 |
1 |
390 |
1.0128 |
1.0000 |
prediction |
LHPNBJEB_00354 |
Cobalt (Co), Nickel (Ni) |
88.2 |
0 |
1 |
1076 |
0.9981 |
1.0000 |
prediction |
LHPNBJEB_00356 |
Chromium (Cr) |
100 |
1.4e-222 |
2 |
402 |
0.9975 |
1.0000 |
prediction |
LHPNBJEB_00357 |
Chromium (Cr) |
100 |
1.2e-110 |
1 |
196 |
1.0000 |
1.0000 |
prediction |
LHPNBJEB_00358 |
Chromium (Cr) |
93.5 |
8.6e-83 |
1 |
153 |
1.0000 |
1.0000 |
prediction |
LHPNBJEB_00390 |
Nickel (Ni), Cobalt (Co) |
99.7 |
3.1e-189 |
1 |
345 |
1.0000 |
0.7913 |
prediction |
LHPNBJEB_00402 |
Copper (Cu), Gold (Au) |
100 |
0 |
1 |
841 |
1.0000 |
1.0000 |
prediction |
LHPNBJEB_00403 |
Gold (Au) |
76.1 |
7.8e-63 |
1 |
155 |
0.9748 |
0.9936 |
prediction |
LHPNBJEB_00414 |
Copper (Cu) |
73.9 |
0 |
42 |
798 |
0.9451 |
0.9921 |
prediction |
LHPNBJEB_00428 |
Lead (Pb) |
79.4 |
0 |
1 |
800 |
1.0000 |
1.0013 |
prediction |
Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents
This table presents antimicrobial resistance genes identified within the plasmid cluster.
Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.
Gene Name |
aro_accession |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
drug_class |
amr_gene_family |
resistance_mechanism |
LHPNBJEB_00403 |
ARO:3000504 |
81.1 |
9.49e-81 |
1 |
148 |
0.9308 |
0.9610 |
monobactam |
resistance-nodulation-cell division (RND) antibiotic efflux pump |
antibiotic efflux |
Analysis of pathogenicity genes to explore pathogen-host interactions
This table presents host pathogen-host interactions within the plasmid cluster.
Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.
Gene Name |
phi_molconn_id |
host gene_name |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
host_descripton |
disease_name |
function |
phenotype_of_mutant |
Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation
This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.
Gene Name |
cazy_id |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
LHPNBJEB_00272 |
ANJ76302.1|GH23 |
100 |
4.31e-116 |
1 |
160 |
1 |
1 |
LHPNBJEB_00359 |
UZF25831.1|CBM0 |
84.3 |
3.17e-128 |
1 |
202 |
0.9902 |
0.9577 |
Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification
This table presents transport proteins within the plasmid cluster.
Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.
Gene Name |
tcid |
identity |
evalue |
qstart |
qend |
query_coverage |
subject_coverage |
class_field |
class_term |
subclass |
subclass_term |
family |
family_term |
LHPNBJEB_00352 |
1.B.17.2.1 |
71.3 |
2.7e-137 |
19 |
415 |
0.9566 |
0.9498 |
1 |
Channels/Pores |
1.B |
β-Barrel Porins |
1.B.17 |
The Outer Membrane Factor (OMF) Family |
LHPNBJEB_00353 |
8.A.1.2.1 |
73.9 |
6.8e-143 |
1 |
390 |
1.0000 |
1.0000 |
8 |
Accessory Factors Involved in Transport |
8.A |
Auxiliary transport proteins |
8.A.1 |
The Membrane Fusion Protein (MFP) Family |
LHPNBJEB_00354 |
2.A.6.1.1 |
88.2 |
0 |
1 |
1076 |
0.9981 |
1.0000 |
2 |
Electrochemical Potential-driven Transporters |
2.A |
Porters (uniporters, symporters, antiporters) |
2.A.6 |
The Resistance-Nodulation-Cell Division (RND) Superfamily |
LHPNBJEB_00356 |
2.A.51.1.1 |
88.2 |
2.2e-197 |
9 |
402 |
0.9801 |
0.9950 |
2 |
Electrochemical Potential-driven Transporters |
2.A |
Porters (uniporters, symporters, antiporters) |
2.A.51 |
The Chromate Ion Transporter (CHR) Family |
LHPNBJEB_00402 |
3.A.3.5.20 |
84 |
0 |
92 |
836 |
0.8859 |
0.9777 |
3 |
Primary Active Transporters |
3.A |
P-P-bond-hydrolysis-driven transporters |
3.A.3 |
The P-type ATPase (P-ATPase) Superfamily |
LHPNBJEB_00428 |
3.A.3.6.4 |
79.4 |
0 |
1 |
800 |
1.0000 |
1.0000 |
3 |
Primary Active Transporters |
3.A |
P-P-bond-hydrolysis-driven transporters |
3.A.3 |
The P-type ATPase (P-ATPase) Superfamily |
LHPNBJEB_00430 |
2.A.108.2.1 |
80.2 |
7.3e-283 |
1 |
641 |
0.9984 |
0.9984 |
2 |
Electrochemical Potential-driven Transporters |
2.A |
Porters (uniporters, symporters, antiporters) |
2.A.108 |
The Iron/Lead Transporter (ILT) Family |