Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1269
  Reference Plasmid   NZ_CP146094.1
  Reference Plasmid Size   341809
  Reference Plasmid GC Content   0.59
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0115616 LHPNBJEB_00408 304569 43 Skin 0.46 protein_coding synonymous_variant LOW 558G>A Gln186Gln
M0115617 LHPNBJEB_00408 304611 43 Skin 0.46 protein_coding synonymous_variant LOW 600G>A Leu200Leu
M0115618 LHPNBJEB_00408 304614 43 Skin 0.46 protein_coding synonymous_variant LOW 603T>C Ala201Ala
M0115619 LHPNBJEB_00408 304869 36 Skin 0.39 protein_coding synonymous_variant LOW 858G>A Val286Val
M0115620 LHPNBJEB_00408 305034 43 Skin 0.46 protein_coding synonymous_variant LOW 1023C>T Gly341Gly
M0115621 LHPNBJEB_00406 305108 42 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1811A>G None
M0115622 LHPNBJEB_00406 305133 42 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1836C>T None
M0115623 LHPNBJEB_00406 305187 42 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1890C>A None
M0115624 LHPNBJEB_00406 305219 42 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1922C>G None
M0115625 LHPNBJEB_00406 305251 42 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1954T>C None
M0115626 LHPNBJEB_00406 305253 42 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1956A>G None
M0115627 LHPNBJEB_00406 305344 39 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -2047G>C None
M0115628 LHPNBJEB_00409 305603 44 Skin 0.47 protein_coding synonymous_variant LOW 183T>C Gly61Gly
M0115629 LHPNBJEB_00409 305628 44 Skin 0.47 protein_coding synonymous_variant LOW 208C>A Arg70Arg
M0115630 LHPNBJEB_00409 305825 41 Skin 0.44 protein_coding synonymous_variant LOW 405G>A Gly135Gly
M0115631 LHPNBJEB_00409 305864 40 Skin 0.43 protein_coding synonymous_variant LOW 444T>C Thr148Thr
M0115632 LHPNBJEB_00409 305925 40 Skin 0.43 protein_coding missense_variant MODERATE 505T>G Leu169Val
M0115633 LHPNBJEB_00409 306113 38 Skin 0.41 protein_coding synonymous_variant LOW 693G>A Thr231Thr
M0115634 LHPNBJEB_00409 306166 39 Skin 0.42 protein_coding missense_variant MODERATE 746T>C Val249Ala
M0115635 LHPNBJEB_00409 306167 39 Skin 0.42 protein_coding synonymous_variant LOW 747A>G Val249Val
M0115636 LHPNBJEB_00409 306170 39 Skin 0.42 protein_coding synonymous_variant LOW 750C>T Cys250Cys
M0115637 LHPNBJEB_00409 306265 39 Skin 0.42 protein_coding missense_variant MODERATE 845T>C Val282Ala
M0115638 LHPNBJEB_00409 306266 39 Skin 0.42 protein_coding synonymous_variant LOW 846T>A Val282Val
M0115639 LHPNBJEB_00406 306320 39 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -3023C>T None
M0115640 LHPNBJEB_00406 306334 39 Skin 0.42 protein_coding upstream_gene_variant MODIFIER -3037G>A None
M0115641 LHPNBJEB_00410 306482 39 Skin 0.42 protein_coding synonymous_variant LOW 168T>C Arg56Arg
M0115642 LHPNBJEB_00410 306531 38 Skin 0.41 protein_coding missense_variant MODERATE 119A>C Asp40Ala
M0115643 LHPNBJEB_00398 295555 10 Skin 0.11 protein_coding missense_variant MODERATE 2687C>T Ala896Val
M0115644 LHPNBJEB_00398 295562 11 Skin 0.12 protein_coding synonymous_variant LOW 2694G>A Ser898Ser
M0115645 LHPNBJEB_00398 295608 12 Skin 0.13 protein_coding synonymous_variant LOW 2740C>T Leu914Leu
M0115646 LHPNBJEB_00398 295649 13 Skin 0.14 protein_coding synonymous_variant LOW 2781T>C Ala927Ala
M0115647 LHPNBJEB_00398 295826 14 Skin 0.15 protein_coding synonymous_variant LOW 2958A>G Ala986Ala
M0115648 LHPNBJEB_00398 295839 14 Skin 0.15 protein_coding synonymous_variant LOW 2971T>C Leu991Leu
M0115649 LHPNBJEB_00398 295853 14 Skin 0.15 protein_coding synonymous_variant LOW 2985A>C Ser995Ser
M0115650 LHPNBJEB_00398 295925 14 Skin 0.15 protein_coding synonymous_variant LOW 3057G>A Leu1019Leu
M0115651 LHPNBJEB_00398 296005 14 Skin 0.15 protein_coding missense_variant MODERATE 3137G>A Gly1046Glu
M0115652 LHPNBJEB_00399 296098 15 Skin 0.16 protein_coding synonymous_variant LOW 30T>C Ala10Ala
M0115653 LHPNBJEB_00399 296278 16 Skin 0.17 protein_coding synonymous_variant LOW 210C>T Asn70Asn
M0115654 LHPNBJEB_00399 296305 16 Skin 0.17 protein_coding synonymous_variant LOW 237G>A Thr79Thr
M0115655 LHPNBJEB_00399 296413 17 Skin 0.18 protein_coding synonymous_variant LOW 345T>C Val115Val
M0115656 LHPNBJEB_00399 296461 17 Skin 0.18 protein_coding synonymous_variant LOW 393T>G Leu131Leu
M0115657 LHPNBJEB_00400 297007 17 Skin 0.18 protein_coding synonymous_variant LOW 435T>G Val145Val
M0115658 LHPNBJEB_00400 297049 17 Skin 0.18 protein_coding synonymous_variant LOW 477G>A Pro159Pro
M0115659 LHPNBJEB_00400 297115 17 Skin 0.18 protein_coding synonymous_variant LOW 543T>C Ala181Ala
M0115660 LHPNBJEB_00400 297121 17 Skin 0.18 protein_coding synonymous_variant LOW 549T>C Pro183Pro
M0115661 LHPNBJEB_00400 297424 19 Skin 0.20 protein_coding synonymous_variant LOW 852G>C Pro284Pro
M0115662 LHPNBJEB_00400 297464 19 Skin 0.20 protein_coding synonymous_variant LOW 892T>C Leu298Leu
M0115663 LHPNBJEB_00400 297484 19 Skin 0.20 protein_coding synonymous_variant LOW 912A>G Val304Val
M0115664 LHPNBJEB_00400 297664 19 Skin 0.20 protein_coding synonymous_variant LOW 1092G>A Pro364Pro
M0115665 LHPNBJEB_00400 297727 19 Skin 0.20 protein_coding synonymous_variant LOW 1155T>C Ile385Ile
M0115666 LHPNBJEB_00400 297779 20 Skin 0.22 protein_coding missense_variant MODERATE 1207A>C Thr403Pro
M0115667 LHPNBJEB_00400 297806 21 Skin 0.23 protein_coding missense_variant MODERATE 1234T>C Ser412Pro
M0115668 LHPNBJEB_00400 297814 21 Skin 0.23 protein_coding synonymous_variant LOW 1242G>T Thr414Thr
M0115669 LHPNBJEB_00400 297817 21 Skin 0.23 protein_coding synonymous_variant LOW 1245C>T Asp415Asp
M0115670 LHPNBJEB_00400 297838 21 Skin 0.23 protein_coding synonymous_variant LOW 1266A>G Val422Val
M0115671 LHPNBJEB_00400 297886 20 Skin 0.22 protein_coding missense_variant MODERATE 1314A>G Ile438Met
M0115672 LHPNBJEB_00402 298085 21 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -587T>C None
M0115673 LHPNBJEB_00401 298206 21 Skin 0.23 protein_coding synonymous_variant LOW 261G>A Gln87Gln
M0115674 LHPNBJEB_00401 298296 21 Skin 0.23 protein_coding synonymous_variant LOW 171T>C Asp57Asp
M0115675 LHPNBJEB_00401 298311 21 Skin 0.23 protein_coding synonymous_variant LOW 156A>T Ser52Ser
M0115676 LHPNBJEB_00401 298317 21 Skin 0.23 protein_coding synonymous_variant LOW 150G>A Lys50Lys
M0115677 LHPNBJEB_00401 298418 21 Skin 0.23 protein_coding missense_variant MODERATE 49A>G Asn17Asp
M0115678 LHPNBJEB_00401 298429 21 Skin 0.23 protein_coding missense_variant MODERATE 38A>G Asp13Gly
M0115679 LHPNBJEB_00401 298527 21 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -61T>C None
M0115680 LHPNBJEB_00401 298584 21 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -118G>A None
M0115681 LHPNBJEB_00402 298733 23 Skin 0.25 protein_coding missense_variant MODERATE 62G>C Gly21Ala
M0115682 LHPNBJEB_00402 298785 23 Skin 0.25 protein_coding synonymous_variant LOW 114C>T Cys38Cys
M0115683 LHPNBJEB_00402 298882 24 Skin 0.26 protein_coding missense_variant MODERATE 211G>C Ala71Pro
M0115684 LHPNBJEB_00402 299076 25 Skin 0.27 protein_coding synonymous_variant LOW 405T>C Gly135Gly
M0115685 LHPNBJEB_00402 299079 25 Skin 0.27 protein_coding synonymous_variant LOW 408G>A Val136Val
M0115686 LHPNBJEB_00402 299097 25 Skin 0.27 protein_coding synonymous_variant LOW 426A>G Leu142Leu
M0115687 LHPNBJEB_00402 299100 25 Skin 0.27 protein_coding synonymous_variant LOW 429C>T Ile143Ile
M0115688 LHPNBJEB_00402 299103 25 Skin 0.27 protein_coding synonymous_variant LOW 432G>T Ala144Ala
M0115689 LHPNBJEB_00402 299136 26 Skin 0.28 protein_coding synonymous_variant LOW 465T>G Pro155Pro
M0115690 LHPNBJEB_00402 299145 26 Skin 0.28 protein_coding synonymous_variant LOW 474C>A Thr158Thr
M0115691 LHPNBJEB_00402 299146 26 Skin 0.28 protein_coding missense_variant MODERATE 475A>G Ser159Gly
M0115692 LHPNBJEB_00402 299169 26 Skin 0.28 protein_coding synonymous_variant LOW 498C>T Ala166Ala
M0115693 LHPNBJEB_00402 299307 27 Skin 0.29 protein_coding synonymous_variant LOW 636C>T Ile212Ile
M0115694 LHPNBJEB_00402 299382 28 Skin 0.30 protein_coding synonymous_variant LOW 711C>T Tyr237Tyr
M0115695 LHPNBJEB_00402 299463 28 Skin 0.30 protein_coding synonymous_variant LOW 792C>T Gly264Gly
M0115696 LHPNBJEB_00402 299535 28 Skin 0.30 protein_coding synonymous_variant LOW 864C>A Ala288Ala
M0115697 LHPNBJEB_00402 299620 28 Skin 0.30 protein_coding missense_variant MODERATE 949G>A Val317Ile
M0115698 LHPNBJEB_00402 299628 30 Skin 0.32 protein_coding synonymous_variant LOW 957A>G Leu319Leu
M0115699 LHPNBJEB_00402 300012 28 Skin 0.30 protein_coding synonymous_variant LOW 1341C>G Ala447Ala
M0115700 LHPNBJEB_00402 300108 30 Skin 0.32 protein_coding synonymous_variant LOW 1437G>T Pro479Pro
M0115701 LHPNBJEB_00402 300121 30 Skin 0.32 protein_coding synonymous_variant LOW 1450C>T Leu484Leu
M0115702 LHPNBJEB_00402 300165 33 Skin 0.35 protein_coding synonymous_variant LOW 1494T>C Ala498Ala
M0115703 LHPNBJEB_00402 300333 31 Skin 0.33 protein_coding synonymous_variant LOW 1662C>T Ala554Ala
M0115704 LHPNBJEB_00402 300336 31 Skin 0.33 protein_coding synonymous_variant LOW 1665G>C Val555Val
M0115705 LHPNBJEB_00402 300523 30 Skin 0.32 protein_coding missense_variant MODERATE 1852G>A Gly618Ser
M0115706 LHPNBJEB_00398 294050 8 Skin 0.09 protein_coding synonymous_variant LOW 1182G>A Leu394Leu
M0115707 LHPNBJEB_00398 294153 8 Skin 0.09 protein_coding missense_variant MODERATE 1285A>G Asn429Asp
M0115708 LHPNBJEB_00398 294159 8 Skin 0.09 protein_coding missense_variant MODERATE 1291G>A Ala431Thr
M0115709 LHPNBJEB_00398 294296 9 Skin 0.10 protein_coding synonymous_variant LOW 1428A>G Glu476Glu
M0115710 LHPNBJEB_00398 294326 10 Skin 0.11 protein_coding synonymous_variant LOW 1458T>C Ala486Ala
M0115711 LHPNBJEB_00398 294344 10 Skin 0.11 protein_coding synonymous_variant LOW 1476A>G Leu492Leu
M0115712 LHPNBJEB_00398 294383 10 Skin 0.11 protein_coding synonymous_variant LOW 1515G>T Leu505Leu
M0115713 LHPNBJEB_00398 294435 10 Skin 0.11 protein_coding missense_variant MODERATE 1567A>C Ile523Leu
M0115714 LHPNBJEB_00398 294447 10 Skin 0.11 protein_coding missense_variant MODERATE 1579C>T Leu527Phe
M0115715 LHPNBJEB_00398 294449 10 Skin 0.11 protein_coding synonymous_variant LOW 1581T>G Leu527Leu
M0115716 LHPNBJEB_00398 294453 10 Skin 0.11 protein_coding missense_variant MODERATE 1585G>A Ala529Thr
M0115717 LHPNBJEB_00398 294458 10 Skin 0.11 protein_coding synonymous_variant LOW 1590T>C Arg530Arg
M0115718 LHPNBJEB_00398 294686 11 Skin 0.12 protein_coding synonymous_variant LOW 1818G>A Pro606Pro
M0115719 LHPNBJEB_00398 294746 11 Skin 0.12 protein_coding synonymous_variant LOW 1878T>C Gly626Gly
M0115720 LHPNBJEB_00398 294758 11 Skin 0.12 protein_coding synonymous_variant LOW 1890T>C Ser630Ser
M0115721 LHPNBJEB_00398 294761 11 Skin 0.12 protein_coding synonymous_variant LOW 1893A>G Glu631Glu
M0115722 LHPNBJEB_00398 294773 11 Skin 0.12 protein_coding synonymous_variant LOW 1905T>C Gly635Gly
M0115723 LHPNBJEB_00398 294782 11 Skin 0.12 protein_coding synonymous_variant LOW 1914T>C Pro638Pro
M0115724 LHPNBJEB_00398 294788 11 Skin 0.12 protein_coding synonymous_variant LOW 1920A>G Ser640Ser
M0115725 LHPNBJEB_00403 301392 51 Skin 0.55 protein_coding synonymous_variant LOW 180A>G Val60Val
M0115726 LHPNBJEB_00403 301604 47 Skin 0.51 protein_coding missense_variant MODERATE 392C>T Thr131Ile
M0115727 LHPNBJEB_00403 301681 47 Skin 0.51 protein_coding missense_variant MODERATE 469C>T Arg157Cys
M0115728 LHPNBJEB_00404 301722 53 Skin 0.57 protein_coding synonymous_variant LOW 15A>C Thr5Thr
M0115729 LHPNBJEB_00404 301746 47 Skin 0.51 protein_coding synonymous_variant LOW 39T>G Ala13Ala
M0115730 LHPNBJEB_00404 301749 47 Skin 0.51 protein_coding synonymous_variant LOW 42C>T Pro14Pro
M0115731 LHPNBJEB_00404 301884 53 Skin 0.57 protein_coding synonymous_variant LOW 177T>C Phe59Phe
M0115732 LHPNBJEB_00404 301885 53 Skin 0.57 protein_coding missense_variant MODERATE 178A>G Asn60Asp
M0115733 LHPNBJEB_00404 301908 47 Skin 0.51 protein_coding synonymous_variant LOW 201G>A Glu67Glu
M0115734 LHPNBJEB_00404 301917 53 Skin 0.57 protein_coding synonymous_variant LOW 210T>C Asp70Asp
M0115735 LHPNBJEB_00401 302121 48 Skin 0.52 protein_coding upstream_gene_variant MODIFIER -3655T>G None
M0115736 LHPNBJEB_00401 302252 47 Skin 0.51 protein_coding upstream_gene_variant MODIFIER -3786T>G None
M0115737 LHPNBJEB_00405 302359 48 Skin 0.52 protein_coding missense_variant MODERATE 90A>C Lys30Asn
M0115738 LHPNBJEB_00405 302542 46 Skin 0.49 protein_coding stop_gained HIGH 273C>G Tyr91*
M0115739 LHPNBJEB_00405 302568 46 Skin 0.49 protein_coding missense_variant MODERATE 299T>C Met100Thr
M0115740 LHPNBJEB_00405 302578 46 Skin 0.49 protein_coding synonymous_variant LOW 309G>A Ala103Ala
M0115741 LHPNBJEB_00405 302614 46 Skin 0.49 protein_coding synonymous_variant LOW 345G>A Gln115Gln
M0115742 LHPNBJEB_00405 302615 46 Skin 0.49 protein_coding missense_variant MODERATE 346C>G Leu116Val
M0115743 LHPNBJEB_00405 302619 46 Skin 0.49 protein_coding stop_gained HIGH 350G>A Trp117*
M0115744 LHPNBJEB_00405 302642 48 Skin 0.52 protein_coding missense_variant MODERATE 373C>T Leu125Phe
M0115745 LHPNBJEB_00405 302943 48 Skin 0.52 protein_coding missense_variant MODERATE 674A>G Asp225Gly
M0115746 LHPNBJEB_00401 303041 48 Skin 0.52 protein_coding upstream_gene_variant MODIFIER -4575T>C None
M0115747 LHPNBJEB_00401 303044 48 Skin 0.52 protein_coding upstream_gene_variant MODIFIER -4578A>G None
M0115748 LHPNBJEB_00401 303084 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4618A>C None
M0115749 LHPNBJEB_00406 303205 45 Skin 0.48 protein_coding synonymous_variant LOW 93T>C Val31Val
M0115750 LHPNBJEB_00406 303230 43 Skin 0.46 protein_coding missense_variant MODERATE 68C>T Thr23Met
M0115751 LHPNBJEB_00401 303320 44 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -4854T>C None
M0115752 LHPNBJEB_00401 303323 44 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -4857G>A None
M0115753 LHPNBJEB_00401 303326 44 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -4860T>C None
M0115754 LHPNBJEB_00401 303331 44 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -4865A>G None
M0115755 LHPNBJEB_00401 303334 44 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -4868T>C None
M0115756 LHPNBJEB_00401 303388 44 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -4922A>C None
M0115757 LHPNBJEB_00401 303397 44 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -4931A>G None
M0115758 LHPNBJEB_00407 303425 43 Skin 0.46 protein_coding synonymous_variant LOW 483G>A Val161Val
M0115759 LHPNBJEB_00407 303431 43 Skin 0.46 protein_coding synonymous_variant LOW 477C>T Asp159Asp
M0115760 LHPNBJEB_00407 303458 42 Skin 0.45 protein_coding synonymous_variant LOW 450A>G Gln150Gln
M0115761 LHPNBJEB_00406 306705 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3408T>C None
M0115762 LHPNBJEB_00411 306767 4 Skin 0.04 protein_coding missense_variant MODERATE 23C>G Pro8Arg
M0115763 LHPNBJEB_00411 306780 4 Skin 0.04 protein_coding synonymous_variant LOW 36A>G Thr12Thr
M0115764 LHPNBJEB_00411 306781 4 Skin 0.04 protein_coding missense_variant MODERATE 37C>G Leu13Val
M0115765 LHPNBJEB_00411 306948 4 Skin 0.04 protein_coding synonymous_variant LOW 204G>A Ala68Ala
M0115766 LHPNBJEB_00411 307032 4 Skin 0.04 protein_coding missense_variant MODERATE 288G>C Gln96His
M0115767 LHPNBJEB_00411 307061 4 Skin 0.04 protein_coding missense_variant MODERATE 317A>G Asp106Gly
M0115768 LHPNBJEB_00411 307095 4 Skin 0.04 protein_coding synonymous_variant LOW 351C>T Cys117Cys
M0115769 LHPNBJEB_00411 307131 4 Skin 0.04 protein_coding synonymous_variant LOW 387A>G Pro129Pro
M0115770 LHPNBJEB_00411 307132 4 Skin 0.04 protein_coding missense_variant MODERATE 388G>A Val130Met
M0115771 LHPNBJEB_00412 307473 4 Skin 0.04 protein_coding missense_variant MODERATE 1906A>G Arg636Gly
M0115772 LHPNBJEB_00412 307514 4 Skin 0.04 protein_coding missense_variant MODERATE 1865C>T Ala622Val
M0115773 LHPNBJEB_00412 307544 4 Skin 0.04 protein_coding missense_variant MODERATE 1835A>G Gln612Arg
M0115774 LHPNBJEB_00412 307762 4 Skin 0.04 protein_coding synonymous_variant LOW 1617C>T Ser539Ser
M0115775 LHPNBJEB_00412 307867 4 Skin 0.04 protein_coding synonymous_variant LOW 1512T>C Tyr504Tyr
M0115776 LHPNBJEB_00412 307954 4 Skin 0.04 protein_coding synonymous_variant LOW 1425G>A Leu475Leu
M0115777 LHPNBJEB_00412 308018 4 Skin 0.04 protein_coding missense_variant MODERATE 1361A>G Gln454Arg
M0115778 LHPNBJEB_00412 308035 4 Skin 0.04 protein_coding synonymous_variant LOW 1344C>G Pro448Pro
M0115779 LHPNBJEB_00412 308038 4 Skin 0.04 protein_coding synonymous_variant LOW 1341G>A Glu447Glu
M0115780 LHPNBJEB_00412 308048 4 Skin 0.04 protein_coding missense_variant MODERATE 1331T>C Ile444Thr
M0115781 LHPNBJEB_00412 308245 3 Skin 0.03 protein_coding synonymous_variant LOW 1134C>T Ser378Ser
M0115782 LHPNBJEB_00412 308266 3 Skin 0.03 protein_coding synonymous_variant LOW 1113G>T Val371Val
M0115783 LHPNBJEB_00412 308278 3 Skin 0.03 protein_coding synonymous_variant LOW 1101G>A Pro367Pro
M0115784 LHPNBJEB_00412 308296 3 Skin 0.03 protein_coding synonymous_variant LOW 1083C>G Leu361Leu
M0115785 LHPNBJEB_00412 308332 3 Skin 0.03 protein_coding synonymous_variant LOW 1047C>G Thr349Thr
M0115786 LHPNBJEB_00412 308350 3 Skin 0.03 protein_coding synonymous_variant LOW 1029T>C Gly343Gly
M0115787 LHPNBJEB_00412 308359 3 Skin 0.03 protein_coding synonymous_variant LOW 1020G>A Gln340Gln
M0115788 LHPNBJEB_00412 308377 3 Skin 0.03 protein_coding synonymous_variant LOW 1002G>C Thr334Thr
M0115789 LHPNBJEB_00412 308424 3 Skin 0.03 protein_coding synonymous_variant LOW 955T>C Leu319Leu
M0115790 LHPNBJEB_00412 308455 3 Skin 0.03 protein_coding synonymous_variant LOW 924T>G Leu308Leu
M0115791 LHPNBJEB_00412 308458 3 Skin 0.03 protein_coding synonymous_variant LOW 921T>C Tyr307Tyr
M0115792 LHPNBJEB_00412 308479 3 Skin 0.03 protein_coding synonymous_variant LOW 900G>A Gln300Gln
M0115793 LHPNBJEB_00412 308527 3 Skin 0.03 protein_coding synonymous_variant LOW 852T>A Gly284Gly
M0115794 LHPNBJEB_00412 308569 3 Skin 0.03 protein_coding synonymous_variant LOW 810A>G Pro270Pro
M0115795 LHPNBJEB_00412 308572 3 Skin 0.03 protein_coding synonymous_variant LOW 807G>A Pro269Pro
M0115796 LHPNBJEB_00412 308605 3 Skin 0.03 protein_coding synonymous_variant LOW 774G>A Gln258Gln
M0115797 LHPNBJEB_00412 308620 3 Skin 0.03 protein_coding synonymous_variant LOW 759G>T Leu253Leu
M0115798 LHPNBJEB_00412 308668 3 Skin 0.03 protein_coding synonymous_variant LOW 711T>C Gly237Gly
M0115799 LHPNBJEB_00412 308673 3 Skin 0.03 protein_coding missense_variant MODERATE 706C>T Leu236Phe
M0115800 LHPNBJEB_00412 308735 3 Skin 0.03 protein_coding missense_variant MODERATE 644C>T Pro215Leu
M0115801 LHPNBJEB_00412 308767 3 Skin 0.03 protein_coding synonymous_variant LOW 612C>T Pro204Pro
M0115802 LHPNBJEB_00412 308773 3 Skin 0.03 protein_coding synonymous_variant LOW 606C>A Pro202Pro
M0115803 LHPNBJEB_00412 308875 3 Skin 0.03 protein_coding synonymous_variant LOW 504G>A Glu168Glu
M0115804 LHPNBJEB_00412 308971 3 Skin 0.03 protein_coding synonymous_variant LOW 408C>A Pro136Pro
M0115805 LHPNBJEB_00412 309001 3 Skin 0.03 protein_coding synonymous_variant LOW 378T>C Ile126Ile
M0115806 LHPNBJEB_00412 309182 3 Skin 0.03 protein_coding missense_variant MODERATE 197C>T Ala66Val
M0115807 LHPNBJEB_00412 309259 3 Skin 0.03 protein_coding synonymous_variant LOW 120T>C Phe40Phe
M0115808 LHPNBJEB_00412 309298 3 Skin 0.03 protein_coding synonymous_variant LOW 81C>T Gly27Gly
M0115809 LHPNBJEB_00412 309307 3 Skin 0.03 protein_coding synonymous_variant LOW 72C>T Asp24Asp
M0115810 LHPNBJEB_00410 309402 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2753A>G None
M0115811 LHPNBJEB_00410 309479 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2830G>A None
M0115812 LHPNBJEB_00410 309537 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2888C>T None
M0115813 LHPNBJEB_00410 309548 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2899G>A None
M0115814 LHPNBJEB_00410 309593 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2944G>A None
M0115815 LHPNBJEB_00402 300549 36 Skin 0.39 protein_coding synonymous_variant LOW 1878A>G Leu626Leu
M0115816 LHPNBJEB_00402 300567 31 Skin 0.33 protein_coding synonymous_variant LOW 1896G>A Ser632Ser
M0115817 LHPNBJEB_00402 300580 37 Skin 0.40 protein_coding missense_variant MODERATE 1909T>G Ser637Ala
M0115818 LHPNBJEB_00402 300658 36 Skin 0.39 protein_coding synonymous_variant LOW 1987C>T Leu663Leu
M0115819 LHPNBJEB_00402 301140 48 Skin 0.52 protein_coding synonymous_variant LOW 2469A>C Gly823Gly
M0115820 LHPNBJEB_00405 302395 44 Skin 0.47 protein_coding synonymous_variant LOW 126G>A Ala42Ala
M0115821 LHPNBJEB_00405 302435 44 Skin 0.47 protein_coding missense_variant MODERATE 166G>A Val56Ile
M0115822 LHPNBJEB_00405 302662 46 Skin 0.49 protein_coding synonymous_variant LOW 393T>C Cys131Cys
M0115823 LHPNBJEB_00405 302793 45 Skin 0.48 protein_coding missense_variant MODERATE 524T>A Leu175Gln
M0115824 LHPNBJEB_00401 303096 44 Skin 0.47 protein_coding upstream_gene_variant MODIFIER -4630G>A None
M0115825 LHPNBJEB_00401 303345 43 Skin 0.46 protein_coding upstream_gene_variant MODIFIER -4879C>G None
M0115826 LHPNBJEB_00401 303359 43 Skin 0.46 protein_coding upstream_gene_variant MODIFIER -4893C>A None
M0115827 LHPNBJEB_00407 303485 41 Skin 0.44 protein_coding synonymous_variant LOW 423T>C Asp141Asp
M0115828 LHPNBJEB_00407 303509 41 Skin 0.44 protein_coding synonymous_variant LOW 399C>T Ala133Ala
M0115829 LHPNBJEB_00407 303515 41 Skin 0.44 protein_coding synonymous_variant LOW 393T>C Asp131Asp
M0115830 LHPNBJEB_00407 303518 41 Skin 0.44 protein_coding synonymous_variant LOW 390A>G Arg130Arg
M0115831 LHPNBJEB_00407 303519 41 Skin 0.44 protein_coding missense_variant MODERATE 389G>T Arg130Ile
M0115832 LHPNBJEB_00407 303535 41 Skin 0.44 protein_coding synonymous_variant LOW 373T>C Leu125Leu
M0115833 LHPNBJEB_00407 303539 41 Skin 0.44 protein_coding synonymous_variant LOW 369C>T Tyr123Tyr
M0115834 LHPNBJEB_00407 303563 40 Skin 0.43 protein_coding synonymous_variant LOW 345C>T His115His
M0115835 LHPNBJEB_00407 303575 40 Skin 0.43 protein_coding synonymous_variant LOW 333G>T Val111Val
M0115836 LHPNBJEB_00407 303581 40 Skin 0.43 protein_coding synonymous_variant LOW 327C>A Pro109Pro
M0115837 LHPNBJEB_00407 303593 40 Skin 0.43 protein_coding synonymous_variant LOW 315T>C Val105Val
M0115838 LHPNBJEB_00407 303596 40 Skin 0.43 protein_coding synonymous_variant LOW 312G>T Ser104Ser
M0115839 LHPNBJEB_00407 303620 30 Skin 0.32 protein_coding synonymous_variant LOW 288C>T Asn96Asn
M0115840 LHPNBJEB_00407 303635 30 Skin 0.32 protein_coding synonymous_variant LOW 273T>C Asp91Asp
M0115841 LHPNBJEB_00407 303638 30 Skin 0.32 protein_coding synonymous_variant LOW 270T>C Ser90Ser
M0115842 LHPNBJEB_00402 300520 3 Skin 0.03 protein_coding missense_variant MODERATE 1849G>A Gly617Ser
M0115843 LHPNBJEB_00402 300555 5 Skin 0.05 protein_coding synonymous_variant LOW 1884C>T Asn628Asn
M0115844 LHPNBJEB_00402 300594 3 Skin 0.03 protein_coding synonymous_variant LOW 1923G>A Arg641Arg
M0115845 LHPNBJEB_00405 302494 4 Skin 0.04 protein_coding synonymous_variant LOW 225A>G Leu75Leu
M0115846 LHPNBJEB_00402 301182 6 Skin 0.06 protein_coding synonymous_variant LOW 2511G>C Ala837Ala
M0115847 LHPNBJEB_00402 301185 6 Skin 0.06 protein_coding synonymous_variant LOW 2514T>C Asp838Asp
M0115848 LHPNBJEB_00402 301194 6 Skin 0.06 protein_coding missense_variant MODERATE 2523T>A His841Gln
M0115849 LHPNBJEB_00403 301257 7 Skin 0.08 protein_coding synonymous_variant LOW 45A>G Lys15Lys
M0115850 LHPNBJEB_00403 301278 7 Skin 0.08 protein_coding synonymous_variant LOW 66A>G Gln22Gln
M0115851 LHPNBJEB_00403 301284 7 Skin 0.08 protein_coding synonymous_variant LOW 72T>C Gly24Gly
M0115852 LHPNBJEB_00403 301369 7 Skin 0.08 protein_coding missense_variant MODERATE 157T>G Ser53Ala
M0115853 LHPNBJEB_00403 301408 7 Skin 0.08 protein_coding synonymous_variant LOW 196T>C Leu66Leu
M0115854 LHPNBJEB_00403 301416 6 Skin 0.06 protein_coding synonymous_variant LOW 204A>G Gly68Gly
M0115855 LHPNBJEB_00403 301449 7 Skin 0.08 protein_coding synonymous_variant LOW 237T>C Asp79Asp
M0115856 LHPNBJEB_00403 301452 7 Skin 0.08 protein_coding synonymous_variant LOW 240A>C Val80Val
M0115857 LHPNBJEB_00403 301488 7 Skin 0.08 protein_coding synonymous_variant LOW 276C>T Asp92Asp
M0115858 LHPNBJEB_00403 301557 6 Skin 0.06 protein_coding synonymous_variant LOW 345C>T Asp115Asp
M0115859 LHPNBJEB_00403 301579 6 Skin 0.06 protein_coding synonymous_variant LOW 367C>T Leu123Leu
M0115860 LHPNBJEB_00403 301612 6 Skin 0.06 protein_coding missense_variant MODERATE 400A>G Asn134Asp
M0115861 LHPNBJEB_00403 301615 6 Skin 0.06 protein_coding missense_variant MODERATE 403A>G Lys135Glu
M0115862 LHPNBJEB_00403 301632 6 Skin 0.06 protein_coding synonymous_variant LOW 420T>C Thr140Thr
M0115863 LHPNBJEB_00403 301638 6 Skin 0.06 protein_coding synonymous_variant LOW 426A>C Ala142Ala
M0115864 LHPNBJEB_00403 301641 6 Skin 0.06 protein_coding synonymous_variant LOW 429G>A Val143Val
M0115865 LHPNBJEB_00403 301661 7 Skin 0.08 protein_coding missense_variant MODERATE 449A>G Asn150Ser
M0115866 LHPNBJEB_00404 301755 6 Skin 0.06 protein_coding synonymous_variant LOW 48A>C Gly16Gly
M0115867 LHPNBJEB_00404 301764 6 Skin 0.06 protein_coding synonymous_variant LOW 57G>A Leu19Leu
M0115868 LHPNBJEB_00404 301776 6 Skin 0.06 protein_coding synonymous_variant LOW 69A>C Ala23Ala
M0115869 LHPNBJEB_00404 301890 6 Skin 0.06 protein_coding synonymous_variant LOW 183T>C Ser61Ser
M0115870 LHPNBJEB_00404 301893 6 Skin 0.06 protein_coding synonymous_variant LOW 186A>C Leu62Leu
M0115871 LHPNBJEB_00404 301899 6 Skin 0.06 protein_coding synonymous_variant LOW 192A>G Glu64Glu
M0115872 LHPNBJEB_00404 301930 6 Skin 0.06 protein_coding synonymous_variant LOW 223C>A Arg75Arg
M0115873 LHPNBJEB_00401 302097 6 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3631G>A None
M0115874 LHPNBJEB_00406 305287 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1990G>T None
M0115875 LHPNBJEB_00406 305295 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1998C>T None
M0115876 LHPNBJEB_00402 300951 5 Skin 0.05 protein_coding synonymous_variant LOW 2280C>T Gly760Gly
M0115877 LHPNBJEB_00398 295040 10 Skin 0.11 protein_coding synonymous_variant LOW 2172T>A Leu724Leu
M0115878 LHPNBJEB_00398 295121 10 Skin 0.11 protein_coding synonymous_variant LOW 2253A>G Leu751Leu
M0115879 LHPNBJEB_00398 295334 10 Skin 0.11 protein_coding synonymous_variant LOW 2466G>A Arg822Arg
M0115880 LHPNBJEB_00398 295362 10 Skin 0.11 protein_coding missense_variant MODERATE 2494A>G Arg832Gly
M0115881 LHPNBJEB_00390 288300 3 Skin 0.03 protein_coding synonymous_variant LOW 6A>C Pro2Pro
M0115882 LHPNBJEB_00397 292327 3 Skin 0.03 protein_coding synonymous_variant LOW 588A>G Leu196Leu
M0115883 LHPNBJEB_00397 292528 4 Skin 0.04 protein_coding synonymous_variant LOW 789G>T Gly263Gly
M0115884 LHPNBJEB_00397 292741 3 Skin 0.03 protein_coding synonymous_variant LOW 1002A>G Pro334Pro
M0115885 LHPNBJEB_00398 293057 3 Skin 0.03 protein_coding synonymous_variant LOW 189G>A Gln63Gln
M0115886 LHPNBJEB_00398 293171 3 Skin 0.03 protein_coding synonymous_variant LOW 303A>C Thr101Thr
M0115887 LHPNBJEB_00398 293252 3 Skin 0.03 protein_coding synonymous_variant LOW 384G>T Thr128Thr
M0115888 LHPNBJEB_00398 293363 4 Skin 0.04 protein_coding synonymous_variant LOW 495G>T Thr165Thr
M0115889 LHPNBJEB_00398 293385 4 Skin 0.04 protein_coding synonymous_variant LOW 517T>C Leu173Leu
M0115890 LHPNBJEB_00398 293414 4 Skin 0.04 protein_coding synonymous_variant LOW 546C>T Gly182Gly
M0115891 LHPNBJEB_00398 293667 4 Skin 0.04 protein_coding missense_variant MODERATE 799A>C Ile267Leu
M0115892 LHPNBJEB_00398 293813 5 Skin 0.05 protein_coding synonymous_variant LOW 945A>G Leu315Leu
M0115893 LHPNBJEB_00398 293855 5 Skin 0.05 protein_coding synonymous_variant LOW 987G>A Pro329Pro
M0115894 LHPNBJEB_00398 293858 5 Skin 0.05 protein_coding synonymous_variant LOW 990A>G Gln330Gln
M0115895 LHPNBJEB_00402 300612 3 Skin 0.03 protein_coding synonymous_variant LOW 1941G>C Ala647Ala
M0115896 LHPNBJEB_00402 300615 3 Skin 0.03 protein_coding synonymous_variant LOW 1944G>C Val648Val
M0115897 LHPNBJEB_00402 300621 3 Skin 0.03 protein_coding synonymous_variant LOW 1950T>C Asp650Asp
M0115898 LHPNBJEB_00402 300643 3 Skin 0.03 protein_coding missense_variant MODERATE 1972G>A Ala658Thr
M0115899 LHPNBJEB_00402 300651 3 Skin 0.03 protein_coding synonymous_variant LOW 1980T>C Ile660Ile
M0115900 LHPNBJEB_00402 300666 3 Skin 0.03 protein_coding synonymous_variant LOW 1995G>A Gln665Gln
M0115901 LHPNBJEB_00402 300684 3 Skin 0.03 protein_coding synonymous_variant LOW 2013G>A Ala671Ala
M0115902 LHPNBJEB_00402 300768 4 Skin 0.04 protein_coding synonymous_variant LOW 2097C>T Pro699Pro
M0115903 LHPNBJEB_00402 300801 4 Skin 0.04 protein_coding synonymous_variant LOW 2130A>G Lys710Lys
M0115904 LHPNBJEB_00402 300852 4 Skin 0.04 protein_coding synonymous_variant LOW 2181G>A Pro727Pro
M0115905 LHPNBJEB_00402 300867 4 Skin 0.04 protein_coding synonymous_variant LOW 2196C>A Ala732Ala
M0115906 LHPNBJEB_00402 300882 5 Skin 0.05 protein_coding synonymous_variant LOW 2211C>G Ala737Ala
M0115907 LHPNBJEB_00402 300924 4 Skin 0.04 protein_coding synonymous_variant LOW 2253A>G Val751Val
M0115908 LHPNBJEB_00402 300936 4 Skin 0.04 protein_coding synonymous_variant LOW 2265G>C Ser755Ser
M0115909 LHPNBJEB_00402 300981 4 Skin 0.04 protein_coding synonymous_variant LOW 2310G>C Ala770Ala
M0115910 LHPNBJEB_00402 301053 4 Skin 0.04 protein_coding synonymous_variant LOW 2382T>G Ala794Ala
M0115911 LHPNBJEB_00402 301059 4 Skin 0.04 protein_coding synonymous_variant LOW 2388C>G Val796Val
M0115912 LHPNBJEB_00402 301071 4 Skin 0.04 protein_coding synonymous_variant LOW 2400A>C Ala800Ala
M0115913 LHPNBJEB_00402 301074 4 Skin 0.04 protein_coding synonymous_variant LOW 2403C>T Tyr801Tyr
M0115914 LHPNBJEB_00402 301077 4 Skin 0.04 protein_coding synonymous_variant LOW 2406T>C Gly802Gly
M0115915 LHPNBJEB_00402 301080 4 Skin 0.04 protein_coding synonymous_variant LOW 2409G>C Val803Val
M0115916 LHPNBJEB_00402 301086 4 Skin 0.04 protein_coding synonymous_variant LOW 2415G>A Leu805Leu
M0115917 LHPNBJEB_00402 301104 5 Skin 0.05 protein_coding synonymous_variant LOW 2433T>C Ala811Ala
M0115918 LHPNBJEB_00402 301110 4 Skin 0.04 protein_coding synonymous_variant LOW 2439G>A Ala813Ala
M0115919 LHPNBJEB_00402 301116 4 Skin 0.04 protein_coding synonymous_variant LOW 2445G>A Ala815Ala
M0115920 LHPNBJEB_00402 301122 4 Skin 0.04 protein_coding synonymous_variant LOW 2451C>T Ser817Ser
M0115921 LHPNBJEB_00402 301143 4 Skin 0.04 protein_coding synonymous_variant LOW 2472C>T Asn824Asn
M0115922 LHPNBJEB_00402 301152 4 Skin 0.04 protein_coding synonymous_variant LOW 2481C>T Arg827Arg
M0115923 LHPNBJEB_00402 301155 4 Skin 0.04 protein_coding synonymous_variant LOW 2484G>T Leu828Leu
M0115924 LHPNBJEB_00402 299979 3 Skin 0.03 protein_coding synonymous_variant LOW 1308G>A Thr436Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
LHPNBJEB_00352 Cobalt (Co), Nickel (Ni) 71.3 7.1e-139 19 415 0.9566 0.9498 experiment
LHPNBJEB_00353 Cobalt (Co), Nickel (Ni) 73.9 1.8e-144 1 390 1.0128 1.0000 experiment
LHPNBJEB_00354 Cobalt (Co), Nickel (Ni) 88.2 0 1 1076 0.9981 1.0000 experiment
LHPNBJEB_00356 Chromium (Cr) 88.2 6e-199 9 402 0.9925 0.9950 experiment
LHPNBJEB_00357 Chromium (Cr) 83.2 1.1e-94 1 196 1.0000 0.9949 experiment
LHPNBJEB_00358 Chromium (Cr) 85.7 1.4e-71 1 140 0.9150 1.0000 experiment
LHPNBJEB_00402 Copper (Cu), Gold (Au) 84 0 92 836 0.8859 0.9777 experiment
LHPNBJEB_00403 Gold (Au) 78.1 2.2e-64 1 155 0.9748 1.0065 experiment
LHPNBJEB_00428 Lead (Pb) 79.4 0 1 800 1.0000 1.0013 experiment
LHPNBJEB_00350 Cobalt (Co), Nickel (Ni) 81.8 4e-61 1 148 1.0000 1.0000 prediction
LHPNBJEB_00352 Cobalt (Co), Nickel (Ni) 71.5 3.3e-137 19 415 0.9566 0.9498 prediction
LHPNBJEB_00353 Cobalt (Co), Nickel (Ni) 73.9 4.2e-142 1 390 1.0128 1.0000 prediction
LHPNBJEB_00354 Cobalt (Co), Nickel (Ni) 88.2 0 1 1076 0.9981 1.0000 prediction
LHPNBJEB_00356 Chromium (Cr) 100 1.4e-222 2 402 0.9975 1.0000 prediction
LHPNBJEB_00357 Chromium (Cr) 100 1.2e-110 1 196 1.0000 1.0000 prediction
LHPNBJEB_00358 Chromium (Cr) 93.5 8.6e-83 1 153 1.0000 1.0000 prediction
LHPNBJEB_00390 Nickel (Ni), Cobalt (Co) 99.7 3.1e-189 1 345 1.0000 0.7913 prediction
LHPNBJEB_00402 Copper (Cu), Gold (Au) 100 0 1 841 1.0000 1.0000 prediction
LHPNBJEB_00403 Gold (Au) 76.1 7.8e-63 1 155 0.9748 0.9936 prediction
LHPNBJEB_00414 Copper (Cu) 73.9 0 42 798 0.9451 0.9921 prediction
LHPNBJEB_00428 Lead (Pb) 79.4 0 1 800 1.0000 1.0013 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
LHPNBJEB_00403 ARO:3000504 81.1 9.49e-81 1 148 0.9308 0.9610 monobactam resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
LHPNBJEB_00272 ANJ76302.1|GH23 100 4.31e-116 1 160 1 1
LHPNBJEB_00359 UZF25831.1|CBM0 84.3 3.17e-128 1 202 0.9902 0.9577





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
LHPNBJEB_00352 1.B.17.2.1 71.3 2.7e-137 19 415 0.9566 0.9498 1 Channels/Pores 1.B β-Barrel Porins 1.B.17 The Outer Membrane Factor (OMF) Family
LHPNBJEB_00353 8.A.1.2.1 73.9 6.8e-143 1 390 1.0000 1.0000 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.1 The Membrane Fusion Protein (MFP) Family
LHPNBJEB_00354 2.A.6.1.1 88.2 0 1 1076 0.9981 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
LHPNBJEB_00356 2.A.51.1.1 88.2 2.2e-197 9 402 0.9801 0.9950 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.51 The Chromate Ion Transporter (CHR) Family
LHPNBJEB_00402 3.A.3.5.20 84 0 92 836 0.8859 0.9777 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.3 The P-type ATPase (P-ATPase) Superfamily
LHPNBJEB_00428 3.A.3.6.4 79.4 0 1 800 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.3 The P-type ATPase (P-ATPase) Superfamily
LHPNBJEB_00430 2.A.108.2.1 80.2 7.3e-283 1 641 0.9984 0.9984 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.108 The Iron/Lead Transporter (ILT) Family