Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1273
  Reference Plasmid   NZ_CP146568.1
  Reference Plasmid Size   10328
  Reference Plasmid GC Content   0.48
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0205191 OAEMAEAD_00002 1834 3 Gut 0.16 protein_coding synonymous_variant LOW 345A>G Gln115Gln
M0205192 OAEMAEAD_00003 2524 3 Gut 0.16 protein_coding synonymous_variant LOW 483C>T Ala161Ala
M0205193 OAEMAEAD_00001 3206 7 Gut 0.37 protein_coding upstream_gene_variant MODIFIER -1893C>T None
M0205194 OAEMAEAD_00001 5005 5 Gut 0.26 protein_coding upstream_gene_variant MODIFIER -3692C>T None
M0205195 OAEMAEAD_00005 5033 3 Gut 0.16 protein_coding synonymous_variant LOW 516G>T Gly172Gly
M0205196 OAEMAEAD_00006 5600 4 Gut 0.21 protein_coding missense_variant MODERATE 878C>A Ala293Glu
M0205197 OAEMAEAD_00006 5987 4 Gut 0.21 protein_coding missense_variant MODERATE 491T>C Leu164Pro
M0205198 OAEMAEAD_00006 6025 4 Gut 0.21 protein_coding missense_variant MODERATE 453G>C Glu151Asp
M0205199 OAEMAEAD_00001 3191 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -1878G>T None
M0205200 OAEMAEAD_00001 4141 9 Gut 0.47 protein_coding upstream_gene_variant MODIFIER -2828T>A None
M0205201 OAEMAEAD_00007 6998 6 Gut 0.32 protein_coding synonymous_variant LOW 345A>G Gln115Gln
M0205202 OAEMAEAD_00008 8054 5 Gut 0.26 protein_coding synonymous_variant LOW 117T>C Tyr39Tyr
M0205203 OAEMAEAD_00001 3190 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1877G>T None
M0205204 OAEMAEAD_00001 3192 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1879A>C None
M0205205 OAEMAEAD_00008 8030 4 Gut 0.21 protein_coding synonymous_variant LOW 141A>G Ala47Ala
M0205206 OAEMAEAD_00008 8060 4 Gut 0.21 protein_coding synonymous_variant LOW 111A>T Ala37Ala
M0205207 OAEMAEAD_00008 8072 4 Gut 0.21 protein_coding synonymous_variant LOW 99C>T Arg33Arg
M0205208 OAEMAEAD_00008 8090 4 Gut 0.21 protein_coding synonymous_variant LOW 81T>C Arg27Arg
M0205209 OAEMAEAD_00008 8096 4 Gut 0.21 protein_coding synonymous_variant LOW 75C>T Gly25Gly
M0205210 OAEMAEAD_00008 8099 4 Gut 0.21 protein_coding synonymous_variant LOW 72C>T Phe24Phe
M0205211 OAEMAEAD_00005 8283 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2735G>T None
M0205212 OAEMAEAD_00005 8291 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2743T>C None
M0205213 OAEMAEAD_00005 8296 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2748T>A None
M0205214 OAEMAEAD_00005 8305 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2757C>T None
M0205215 OAEMAEAD_00005 8314 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2766G>T None
M0205216 OAEMAEAD_00005 8318 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2770A>G None
M0205217 OAEMAEAD_00005 8381 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2833C>T None
M0205218 OAEMAEAD_00005 8392 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2844C>T None
M0205219 OAEMAEAD_00005 8405 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2857T>C None
M0205220 OAEMAEAD_00005 8416 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2868G>C None
M0205221 OAEMAEAD_00005 8417 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2869G>A None
M0205222 OAEMAEAD_00005 8422 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2874G>T None
M0205223 OAEMAEAD_00005 8423 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2875T>A None
M0205224 OAEMAEAD_00005 8424 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2876C>T None
M0205225 OAEMAEAD_00005 8430 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2882G>A None
M0205226 OAEMAEAD_00005 8447 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2899G>A None
M0205227 OAEMAEAD_00005 8450 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2902C>G None
M0205228 OAEMAEAD_00005 8480 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -2932A>G None
M0205229 OAEMAEAD_00005 9147 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3599G>A None
M0205230 OAEMAEAD_00005 9305 6 Gut 0.32 protein_coding upstream_gene_variant MODIFIER -3757T>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term