Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1279
  Reference Plasmid   NZ_CP146883.1
  Reference Plasmid Size   193392
  Reference Plasmid GC Content   0.57
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0205346 PMEBLBEG_00030 32068 4 Gut 0.21 protein_coding synonymous_variant LOW 66T>A Gly22Gly
M0205347 PMEBLBEG_00030 32071 4 Gut 0.21 protein_coding synonymous_variant LOW 63C>A Pro21Pro
M0205348 PMEBLBEG_00030 32080 4 Gut 0.21 protein_coding synonymous_variant LOW 54G>A Ser18Ser
M0205349 PMEBLBEG_00005 1568 4 Gut 0.21 protein_coding synonymous_variant LOW 204C>T Thr68Thr
M0205350 PMEBLBEG_00007 2426 5 Gut 0.26 protein_coding missense_variant MODERATE 421C>G Leu141Val
M0205351 PMEBLBEG_00008 3927 3 Gut 0.16 protein_coding synonymous_variant LOW 558T>G Arg186Arg
M0205352 PMEBLBEG_00008 3930 3 Gut 0.16 protein_coding synonymous_variant LOW 555A>C Ala185Ala
M0205353 PMEBLBEG_00008 3933 3 Gut 0.16 protein_coding synonymous_variant LOW 552G>A Gln184Gln
M0205354 PMEBLBEG_00009 4711 4 Gut 0.21 protein_coding missense_variant MODERATE 121A>G Ile41Val
M0205355 PMEBLBEG_00009 4721 4 Gut 0.21 protein_coding synonymous_variant LOW 111A>G Arg37Arg
M0205356 PMEBLBEG_00009 4748 4 Gut 0.21 protein_coding synonymous_variant LOW 84C>T Val28Val
M0205357 PMEBLBEG_00009 4800 4 Gut 0.21 protein_coding missense_variant MODERATE 32C>T Ala11Val
M0205358 PMEBLBEG_00010 4837 4 Gut 0.21 protein_coding synonymous_variant LOW 1038A>G Arg346Arg
M0205359 PMEBLBEG_00010 4936 3 Gut 0.16 protein_coding synonymous_variant LOW 939C>T His313His
M0205360 PMEBLBEG_00010 5011 4 Gut 0.21 protein_coding synonymous_variant LOW 864T>C Ala288Ala
M0205361 PMEBLBEG_00010 5308 4 Gut 0.21 protein_coding synonymous_variant LOW 567C>T Ile189Ile
M0205362 PMEBLBEG_00010 5398 5 Gut 0.26 protein_coding synonymous_variant LOW 477T>C Thr159Thr
M0205363 PMEBLBEG_00010 5465 3 Gut 0.16 protein_coding missense_variant MODERATE 410C>T Ala137Val
M0205364 PMEBLBEG_00010 5809 3 Gut 0.16 protein_coding synonymous_variant LOW 66G>A Lys22Lys
M0205365 PMEBLBEG_00010 5825 4 Gut 0.21 protein_coding missense_variant MODERATE 50G>A Arg17Lys
M0205366 PMEBLBEG_00010 5833 4 Gut 0.21 protein_coding synonymous_variant LOW 42C>T Asn14Asn
M0205367 PMEBLBEG_00011 6106 3 Gut 0.16 protein_coding synonymous_variant LOW 816T>C Asp272Asp
M0205368 PMEBLBEG_00011 6181 4 Gut 0.21 protein_coding synonymous_variant LOW 741G>A Ala247Ala
M0205369 PMEBLBEG_00011 6187 4 Gut 0.21 protein_coding synonymous_variant LOW 735T>C Arg245Arg
M0205370 PMEBLBEG_00011 6241 3 Gut 0.16 protein_coding synonymous_variant LOW 681G>T Pro227Pro
M0205371 PMEBLBEG_00011 6264 4 Gut 0.21 protein_coding missense_variant MODERATE 658T>A Ser220Thr
M0205372 PMEBLBEG_00011 6268 4 Gut 0.21 protein_coding synonymous_variant LOW 654G>A Glu218Glu
M0205373 PMEBLBEG_00011 6274 4 Gut 0.21 protein_coding synonymous_variant LOW 648G>A Val216Val
M0205374 PMEBLBEG_00011 6307 3 Gut 0.16 protein_coding synonymous_variant LOW 615G>A Gly205Gly
M0205375 PMEBLBEG_00011 6412 3 Gut 0.16 protein_coding synonymous_variant LOW 510T>C Asp170Asp
M0205376 PMEBLBEG_00011 6458 3 Gut 0.16 protein_coding missense_variant MODERATE 464T>C Val155Ala
M0205377 PMEBLBEG_00011 6460 3 Gut 0.16 protein_coding synonymous_variant LOW 462C>T Pro154Pro
M0205378 PMEBLBEG_00011 6505 4 Gut 0.21 protein_coding synonymous_variant LOW 417T>C Asp139Asp
M0205379 PMEBLBEG_00011 6601 4 Gut 0.21 protein_coding synonymous_variant LOW 321G>A Lys107Lys
M0205380 PMEBLBEG_00011 6649 3 Gut 0.16 protein_coding synonymous_variant LOW 273C>A Gly91Gly
M0205381 PMEBLBEG_00011 6652 3 Gut 0.16 protein_coding synonymous_variant LOW 270C>A Ala90Ala
M0205382 PMEBLBEG_00011 6664 3 Gut 0.16 protein_coding missense_variant MODERATE 258A>C Glu86Asp
M0205383 PMEBLBEG_00011 6667 3 Gut 0.16 protein_coding missense_variant MODERATE 255C>A Asp85Glu
M0205384 PMEBLBEG_00011 6668 3 Gut 0.16 protein_coding missense_variant MODERATE 254A>C Asp85Ala
M0205385 PMEBLBEG_00011 6670 3 Gut 0.16 protein_coding synonymous_variant LOW 252C>A Arg84Arg
M0205386 PMEBLBEG_00012 7086 3 Gut 0.16 protein_coding missense_variant MODERATE 559T>C Ser187Pro
M0205387 PMEBLBEG_00012 7087 3 Gut 0.16 protein_coding synonymous_variant LOW 558C>T Asp186Asp
M0205388 PMEBLBEG_00012 7456 4 Gut 0.21 protein_coding synonymous_variant LOW 189A>G Leu63Leu
M0205389 PMEBLBEG_00012 7621 4 Gut 0.21 protein_coding synonymous_variant LOW 24T>C Arg8Arg
M0205390 PMEBLBEG_00012 7630 4 Gut 0.21 protein_coding synonymous_variant LOW 15G>A Ser5Ser
M0205391 PMEBLBEG_00007 7679 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -4833A>G None
M0205392 PMEBLBEG_00007 7681 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -4835G>A None
M0205393 PMEBLBEG_00007 7733 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -4887T>G None
M0205394 PMEBLBEG_00007 7758 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -4912C>T None
M0205395 PMEBLBEG_00007 7759 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -4913T>C None
M0205396 PMEBLBEG_00013 8008 4 Gut 0.21 protein_coding synonymous_variant LOW 96T>C Asp32Asp
M0205397 PMEBLBEG_00013 8059 4 Gut 0.21 protein_coding synonymous_variant LOW 147C>T Pro49Pro
M0205398 PMEBLBEG_00013 8151 4 Gut 0.21 protein_coding missense_variant MODERATE 239A>C Asp80Ala
M0205399 PMEBLBEG_00013 8326 4 Gut 0.21 protein_coding synonymous_variant LOW 414C>T Ala138Ala
M0205400 PMEBLBEG_00013 8475 4 Gut 0.21 protein_coding missense_variant MODERATE 563A>G Gln188Arg
M0205401 PMEBLBEG_00013 8522 4 Gut 0.21 protein_coding missense_variant MODERATE 610A>G Lys204Glu
M0205402 PMEBLBEG_00010 10697 4 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -4823T>C None
M0205403 PMEBLBEG_00015 11533 4 Gut 0.21 protein_coding missense_variant MODERATE 1510G>A Ala504Thr
M0205404 PMEBLBEG_00015 11711 3 Gut 0.16 protein_coding synonymous_variant LOW 1332T>C Asp444Asp
M0205405 PMEBLBEG_00015 11842 5 Gut 0.26 protein_coding missense_variant MODERATE 1201T>C Phe401Leu
M0205406 PMEBLBEG_00015 11974 4 Gut 0.21 protein_coding missense_variant MODERATE 1069C>T Pro357Ser
M0205407 PMEBLBEG_00015 12309 3 Gut 0.16 protein_coding missense_variant MODERATE 734G>A Cys245Tyr
M0205408 PMEBLBEG_00015 12310 3 Gut 0.16 protein_coding missense_variant MODERATE 733T>C Cys245Arg
M0205409 PMEBLBEG_00015 12327 3 Gut 0.16 protein_coding missense_variant MODERATE 716C>T Ala239Val
M0205410 PMEBLBEG_00015 12328 3 Gut 0.16 protein_coding missense_variant MODERATE 715G>A Ala239Thr
M0205411 PMEBLBEG_00015 12378 3 Gut 0.16 protein_coding missense_variant MODERATE 665T>C Leu222Pro
M0205412 PMEBLBEG_00015 12388 4 Gut 0.21 protein_coding missense_variant MODERATE 655A>G Thr219Ala
M0205413 PMEBLBEG_00015 12431 3 Gut 0.16 protein_coding missense_variant MODERATE 612G>C Glu204Asp
M0205414 PMEBLBEG_00015 12486 3 Gut 0.16 protein_coding missense_variant MODERATE 557A>G Asn186Ser
M0205415 PMEBLBEG_00015 12489 3 Gut 0.16 protein_coding missense_variant MODERATE 554G>A Gly185Asp
M0205416 PMEBLBEG_00015 12511 3 Gut 0.16 protein_coding missense_variant MODERATE 532A>G Asn178Asp
M0205417 PMEBLBEG_00015 12530 3 Gut 0.16 protein_coding missense_variant MODERATE 513C>A Asp171Glu
M0205418 PMEBLBEG_00015 12548 3 Gut 0.16 protein_coding synonymous_variant LOW 495A>G Thr165Thr
M0205419 PMEBLBEG_00015 12574 3 Gut 0.16 protein_coding missense_variant MODERATE 469A>G Thr157Ala
M0205420 PMEBLBEG_00015 12643 3 Gut 0.16 protein_coding missense_variant MODERATE 400C>T Pro134Ser
M0205421 PMEBLBEG_00015 12650 3 Gut 0.16 protein_coding missense_variant MODERATE 393G>T Arg131Ser
M0205422 PMEBLBEG_00015 12680 3 Gut 0.16 protein_coding missense_variant MODERATE 363A>T Glu121Asp
M0205423 PMEBLBEG_00015 12692 3 Gut 0.16 protein_coding synonymous_variant LOW 351G>A Pro117Pro
M0205424 PMEBLBEG_00015 12731 3 Gut 0.16 protein_coding synonymous_variant LOW 312A>G Gln104Gln
M0205425 PMEBLBEG_00015 12910 3 Gut 0.16 protein_coding missense_variant MODERATE 133G>A Ala45Thr
M0205426 PMEBLBEG_00015 12934 3 Gut 0.16 protein_coding missense_variant MODERATE 109G>A Ala37Thr
M0205427 PMEBLBEG_00015 12946 3 Gut 0.16 protein_coding missense_variant MODERATE 97A>G Asn33Asp
M0205428 PMEBLBEG_00015 12954 3 Gut 0.16 protein_coding missense_variant MODERATE 89A>C Asp30Ala
M0205429 PMEBLBEG_00015 12959 3 Gut 0.16 protein_coding synonymous_variant LOW 84C>T Asp28Asp
M0205430 PMEBLBEG_00014 13045 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -2435A>T None
M0205431 PMEBLBEG_00016 13096 3 Gut 0.16 protein_coding synonymous_variant LOW 1809C>T Ala603Ala
M0205432 PMEBLBEG_00016 13538 6 Gut 0.32 protein_coding missense_variant MODERATE 1367T>C Val456Ala
M0205433 PMEBLBEG_00016 13966 3 Gut 0.16 protein_coding synonymous_variant LOW 939T>C Ser313Ser
M0205434 PMEBLBEG_00016 14071 4 Gut 0.21 protein_coding synonymous_variant LOW 834G>A Ala278Ala
M0205435 PMEBLBEG_00016 14074 3 Gut 0.16 protein_coding synonymous_variant LOW 831C>A Ala277Ala
M0205436 PMEBLBEG_00016 14077 3 Gut 0.16 protein_coding synonymous_variant LOW 828C>A Ala276Ala
M0205437 PMEBLBEG_00016 14107 3 Gut 0.16 protein_coding synonymous_variant LOW 798G>C Gly266Gly
M0205438 PMEBLBEG_00016 14119 4 Gut 0.21 protein_coding synonymous_variant LOW 786C>A Ala262Ala
M0205439 PMEBLBEG_00016 14149 4 Gut 0.21 protein_coding synonymous_variant LOW 756A>G Lys252Lys
M0205440 PMEBLBEG_00016 14266 3 Gut 0.16 protein_coding synonymous_variant LOW 639G>A Ala213Ala
M0205441 PMEBLBEG_00016 14286 3 Gut 0.16 protein_coding missense_variant MODERATE 619A>G Thr207Ala
M0205442 PMEBLBEG_00016 14311 4 Gut 0.21 protein_coding synonymous_variant LOW 594A>G Lys198Lys
M0205443 PMEBLBEG_00016 14539 3 Gut 0.16 protein_coding synonymous_variant LOW 366G>A Leu122Leu
M0205444 PMEBLBEG_00016 14545 3 Gut 0.16 protein_coding synonymous_variant LOW 360T>C Leu120Leu
M0205445 PMEBLBEG_00017 15265 6 Gut 0.32 protein_coding missense_variant MODERATE 350T>C Leu117Pro
M0205446 PMEBLBEG_00017 15381 3 Gut 0.16 protein_coding synonymous_variant LOW 234A>G Leu78Leu
M0205447 PMEBLBEG_00018 15869 4 Gut 0.21 protein_coding synonymous_variant LOW 3168T>C Asp1056Asp
M0205448 PMEBLBEG_00018 15965 3 Gut 0.16 protein_coding synonymous_variant LOW 3072G>A Gln1024Gln
M0205449 PMEBLBEG_00018 16019 3 Gut 0.16 protein_coding synonymous_variant LOW 3018C>A Arg1006Arg
M0205450 PMEBLBEG_00018 16021 3 Gut 0.16 protein_coding missense_variant MODERATE 3016C>A Arg1006Ser
M0205451 PMEBLBEG_00018 16022 3 Gut 0.16 protein_coding synonymous_variant LOW 3015G>C Leu1005Leu
M0205452 PMEBLBEG_00018 16151 3 Gut 0.16 protein_coding synonymous_variant LOW 2886A>C Val962Val
M0205453 PMEBLBEG_00018 16487 3 Gut 0.16 protein_coding synonymous_variant LOW 2550G>C Gly850Gly
M0205454 PMEBLBEG_00018 16514 5 Gut 0.26 protein_coding synonymous_variant LOW 2523A>G Pro841Pro
M0205455 PMEBLBEG_00018 16526 5 Gut 0.26 protein_coding synonymous_variant LOW 2511G>A Gln837Gln
M0205456 PMEBLBEG_00018 16640 3 Gut 0.16 protein_coding synonymous_variant LOW 2397A>C Gly799Gly
M0205457 PMEBLBEG_00018 16841 3 Gut 0.16 protein_coding synonymous_variant LOW 2196C>T Arg732Arg
M0205458 PMEBLBEG_00018 16880 4 Gut 0.21 protein_coding synonymous_variant LOW 2157A>C Ile719Ile
M0205459 PMEBLBEG_00018 16991 3 Gut 0.16 protein_coding synonymous_variant LOW 2046A>G Gly682Gly
M0205460 PMEBLBEG_00018 17138 5 Gut 0.26 protein_coding synonymous_variant LOW 1899T>C Ala633Ala
M0205461 PMEBLBEG_00018 17321 5 Gut 0.26 protein_coding missense_variant MODERATE 1716A>C Glu572Asp
M0205462 PMEBLBEG_00018 18178 4 Gut 0.21 protein_coding missense_variant MODERATE 859T>G Ser287Ala
M0205463 PMEBLBEG_00018 18392 3 Gut 0.16 protein_coding synonymous_variant LOW 645C>T Tyr215Tyr
M0205464 PMEBLBEG_00018 18395 3 Gut 0.16 protein_coding synonymous_variant LOW 642G>A Arg214Arg
M0205465 PMEBLBEG_00018 18412 3 Gut 0.16 protein_coding missense_variant MODERATE 625C>T Arg209Cys
M0205466 PMEBLBEG_00018 18413 3 Gut 0.16 protein_coding synonymous_variant LOW 624G>A Gly208Gly
M0205467 PMEBLBEG_00019 19959 5 Gut 0.26 protein_coding missense_variant MODERATE 250G>A Ala84Thr
M0205468 PMEBLBEG_00020 20974 4 Gut 0.21 protein_coding synonymous_variant LOW 102A>G Arg34Arg
M0205469 PMEBLBEG_00021 21331 4 Gut 0.21 protein_coding missense_variant MODERATE 193A>G Lys65Glu
M0205470 PMEBLBEG_00023 21968 4 Gut 0.21 protein_coding missense_variant MODERATE 247A>G Asn83Asp
M0205471 PMEBLBEG_00023 22301 4 Gut 0.21 protein_coding missense_variant MODERATE 580A>G Ile194Val
M0205472 PMEBLBEG_00023 22594 4 Gut 0.21 protein_coding synonymous_variant LOW 873A>T Ser291Ser
M0205473 PMEBLBEG_00023 22611 3 Gut 0.16 protein_coding missense_variant MODERATE 890T>C Leu297Pro
M0205474 PMEBLBEG_00023 22663 4 Gut 0.21 protein_coding synonymous_variant LOW 942G>T Thr314Thr
M0205475 PMEBLBEG_00023 22666 4 Gut 0.21 protein_coding synonymous_variant LOW 945A>G Val315Val
M0205476 PMEBLBEG_00023 22675 4 Gut 0.21 protein_coding synonymous_variant LOW 954A>G Gly318Gly
M0205477 PMEBLBEG_00023 22681 3 Gut 0.16 protein_coding synonymous_variant LOW 960G>A Thr320Thr
M0205478 PMEBLBEG_00023 22732 4 Gut 0.21 protein_coding synonymous_variant LOW 1011A>G Thr337Thr
M0205479 PMEBLBEG_00023 22756 3 Gut 0.16 protein_coding synonymous_variant LOW 1035C>T Ala345Ala
M0205480 PMEBLBEG_00023 22854 3 Gut 0.16 protein_coding missense_variant MODERATE 1133A>C Asp378Ala
M0205481 PMEBLBEG_00023 22897 3 Gut 0.16 protein_coding synonymous_variant LOW 1176A>G Ala392Ala
M0205482 PMEBLBEG_00023 22923 4 Gut 0.21 protein_coding missense_variant MODERATE 1202A>G His401Arg
M0205483 PMEBLBEG_00023 22933 4 Gut 0.21 protein_coding synonymous_variant LOW 1212T>G Leu404Leu
M0205484 PMEBLBEG_00023 22936 4 Gut 0.21 protein_coding synonymous_variant LOW 1215C>G Pro405Pro
M0205485 PMEBLBEG_00023 22952 4 Gut 0.21 protein_coding missense_variant MODERATE 1231T>C Tyr411His
M0205486 PMEBLBEG_00023 22990 3 Gut 0.16 protein_coding synonymous_variant LOW 1269T>C His423His
M0205487 PMEBLBEG_00024 23343 4 Gut 0.21 protein_coding synonymous_variant LOW 198G>A Val66Val
M0205488 PMEBLBEG_00024 23355 4 Gut 0.21 protein_coding synonymous_variant LOW 210T>C Ile70Ile
M0205489 PMEBLBEG_00024 23403 4 Gut 0.21 protein_coding synonymous_variant LOW 258T>C Ile86Ile
M0205490 PMEBLBEG_00024 23415 4 Gut 0.21 protein_coding synonymous_variant LOW 270T>C Ile90Ile
M0205491 PMEBLBEG_00024 23425 4 Gut 0.21 protein_coding missense_variant MODERATE 280G>A Val94Ile
M0205492 PMEBLBEG_00025 23828 4 Gut 0.21 protein_coding synonymous_variant LOW 108T>C Thr36Thr
M0205493 PMEBLBEG_00025 23852 4 Gut 0.21 protein_coding synonymous_variant LOW 132G>A Gln44Gln
M0205494 PMEBLBEG_00025 23873 4 Gut 0.21 protein_coding missense_variant MODERATE 153A>T Gln51His
M0205495 PMEBLBEG_00025 23928 4 Gut 0.21 protein_coding missense_variant MODERATE 208A>G Lys70Glu
M0205496 PMEBLBEG_00025 23954 3 Gut 0.16 protein_coding synonymous_variant LOW 234T>G Leu78Leu
M0205497 PMEBLBEG_00025 24170 4 Gut 0.21 protein_coding synonymous_variant LOW 450T>A Ala150Ala
M0205498 PMEBLBEG_00025 24251 4 Gut 0.21 protein_coding synonymous_variant LOW 531T>C His177His
M0205499 PMEBLBEG_00025 24257 4 Gut 0.21 protein_coding synonymous_variant LOW 537G>A Thr179Thr
M0205500 PMEBLBEG_00025 24329 4 Gut 0.21 protein_coding synonymous_variant LOW 609T>C Phe203Phe
M0205501 PMEBLBEG_00025 24479 3 Gut 0.16 protein_coding synonymous_variant LOW 759C>T Asn253Asn
M0205502 PMEBLBEG_00026 24785 4 Gut 0.21 protein_coding synonymous_variant LOW 1206T>C Ser402Ser
M0205503 PMEBLBEG_00026 24809 4 Gut 0.21 protein_coding synonymous_variant LOW 1182A>G Glu394Glu
M0205504 PMEBLBEG_00026 24844 4 Gut 0.21 protein_coding missense_variant MODERATE 1147C>A Gln383Lys
M0205505 PMEBLBEG_00026 24935 4 Gut 0.21 protein_coding synonymous_variant LOW 1056C>T Ser352Ser
M0205506 PMEBLBEG_00026 25334 4 Gut 0.21 protein_coding synonymous_variant LOW 657T>C Tyr219Tyr
M0205507 PMEBLBEG_00026 25628 4 Gut 0.21 protein_coding synonymous_variant LOW 363T>C Gly121Gly
M0205508 PMEBLBEG_00026 25724 4 Gut 0.21 protein_coding synonymous_variant LOW 267C>T Ser89Ser
M0205509 PMEBLBEG_00027 26638 4 Gut 0.21 protein_coding synonymous_variant LOW 180C>T Tyr60Tyr
M0205510 PMEBLBEG_00028 26938 4 Gut 0.21 protein_coding synonymous_variant LOW 4206G>A Gly1402Gly
M0205511 PMEBLBEG_00028 27013 4 Gut 0.21 protein_coding synonymous_variant LOW 4131A>G Pro1377Pro
M0205512 PMEBLBEG_00028 27220 3 Gut 0.16 protein_coding synonymous_variant LOW 3924T>C Ser1308Ser
M0205513 PMEBLBEG_00028 27361 3 Gut 0.16 protein_coding synonymous_variant LOW 3783C>T Gly1261Gly
M0205514 PMEBLBEG_00028 27457 3 Gut 0.16 protein_coding synonymous_variant LOW 3687T>C Asn1229Asn
M0205515 PMEBLBEG_00028 27592 3 Gut 0.16 protein_coding synonymous_variant LOW 3552G>A Gly1184Gly
M0205516 PMEBLBEG_00028 27907 3 Gut 0.16 protein_coding synonymous_variant LOW 3237T>C Ile1079Ile
M0205517 PMEBLBEG_00028 28039 3 Gut 0.16 protein_coding synonymous_variant LOW 3105A>G Gly1035Gly
M0205518 PMEBLBEG_00028 28129 3 Gut 0.16 protein_coding synonymous_variant LOW 3015C>T Ile1005Ile
M0205519 PMEBLBEG_00028 28901 4 Gut 0.21 protein_coding missense_variant MODERATE 2243G>A Gly748Glu
M0205520 PMEBLBEG_00028 28908 4 Gut 0.21 protein_coding missense_variant MODERATE 2236G>A Ala746Thr
M0205521 PMEBLBEG_00028 29011 4 Gut 0.21 protein_coding synonymous_variant LOW 2133T>C Gly711Gly
M0205522 PMEBLBEG_00028 29048 4 Gut 0.21 protein_coding missense_variant MODERATE 2096C>T Ala699Val
M0205523 PMEBLBEG_00028 29141 3 Gut 0.16 protein_coding missense_variant MODERATE 2003T>C Met668Thr
M0205524 PMEBLBEG_00028 29261 3 Gut 0.16 protein_coding missense_variant MODERATE 1883G>A Arg628Lys
M0205525 PMEBLBEG_00028 29515 4 Gut 0.21 protein_coding synonymous_variant LOW 1629T>C Thr543Thr
M0205526 PMEBLBEG_00028 29620 4 Gut 0.21 protein_coding synonymous_variant LOW 1524A>G Lys508Lys
M0205527 PMEBLBEG_00028 30631 4 Gut 0.21 protein_coding synonymous_variant LOW 513G>A Glu171Glu
M0205528 PMEBLBEG_00028 30640 4 Gut 0.21 protein_coding synonymous_variant LOW 504T>A Pro168Pro
M0205529 PMEBLBEG_00028 30676 4 Gut 0.21 protein_coding synonymous_variant LOW 468T>C Tyr156Tyr
M0205530 PMEBLBEG_00028 31093 4 Gut 0.21 protein_coding synonymous_variant LOW 51T>C Ser17Ser
M0205531 PMEBLBEG_00030 31714 3 Gut 0.16 protein_coding synonymous_variant LOW 420C>T Asp140Asp
M0205532 PMEBLBEG_00030 32053 3 Gut 0.16 protein_coding synonymous_variant LOW 81G>A Lys27Lys
M0205533 PMEBLBEG_00030 32059 3 Gut 0.16 protein_coding synonymous_variant LOW 75A>G Ser25Ser
M0205534 PMEBLBEG_00030 32101 3 Gut 0.16 protein_coding synonymous_variant LOW 33T>C Phe11Phe
M0205535 PMEBLBEG_00030 32107 3 Gut 0.16 protein_coding synonymous_variant LOW 27A>G Ala9Ala
M0205536 PMEBLBEG_00030 32110 3 Gut 0.16 protein_coding synonymous_variant LOW 24C>A Arg8Arg
M0205537 PMEBLBEG_00139 97882 3 Gut 0.16 protein_coding missense_variant MODERATE 299G>C Arg100Thr
M0205538 PMEBLBEG_00139 98164 3 Gut 0.16 protein_coding missense_variant MODERATE 17G>A Gly6Glu
M0205539 PMEBLBEG_00137 98227 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1623G>A None
M0205540 PMEBLBEG_00137 98228 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1624A>G None
M0205541 PMEBLBEG_00137 98238 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1634G>A None
M0205542 PMEBLBEG_00137 98311 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1707G>A None
M0205543 PMEBLBEG_00140 99617 4 Gut 0.21 protein_coding synonymous_variant LOW 1167C>T His389His
M0205544 PMEBLBEG_00140 99974 4 Gut 0.21 protein_coding synonymous_variant LOW 1524A>G Lys508Lys
M0205545 PMEBLBEG_00140 99981 4 Gut 0.21 protein_coding missense_variant MODERATE 1531A>G Ile511Val
M0205546 PMEBLBEG_00140 100829 3 Gut 0.16 protein_coding synonymous_variant LOW 2379C>T Ala793Ala
M0205547 PMEBLBEG_00141 101755 4 Gut 0.21 protein_coding synonymous_variant LOW 129C>T Asp43Asp
M0205548 PMEBLBEG_00141 101758 4 Gut 0.21 protein_coding synonymous_variant LOW 132A>G Gly44Gly
M0205549 PMEBLBEG_00141 101790 4 Gut 0.21 protein_coding missense_variant MODERATE 164A>G Glu55Gly
M0205550 PMEBLBEG_00141 101954 3 Gut 0.16 protein_coding missense_variant MODERATE 328G>A Ala110Thr
M0205551 PMEBLBEG_00141 102089 3 Gut 0.16 protein_coding missense_variant MODERATE 463G>A Gly155Ser
M0205552 PMEBLBEG_00141 102127 3 Gut 0.16 protein_coding synonymous_variant LOW 501G>A Ala167Ala
M0205553 PMEBLBEG_00141 102145 3 Gut 0.16 protein_coding synonymous_variant LOW 519G>A Ala173Ala
M0205554 PMEBLBEG_00150 121056 3 Gut 0.16 protein_coding missense_variant MODERATE 199A>G Asn67Asp
M0205555 PMEBLBEG_00153 122916 3 Gut 0.16 protein_coding synonymous_variant LOW 747T>C Asn249Asn
M0205556 PMEBLBEG_00153 123102 3 Gut 0.16 protein_coding synonymous_variant LOW 561T>A Ser187Ser
M0205557 PMEBLBEG_00153 123109 3 Gut 0.16 protein_coding missense_variant MODERATE 554T>C Ile185Thr
M0205558 PMEBLBEG_00154 123694 3 Gut 0.16 protein_coding missense_variant MODERATE 259T>C Trp87Arg
M0205559 PMEBLBEG_00150 124713 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -3459T>C None
M0205560 PMEBLBEG_00150 124714 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -3460G>A None
M0205561 PMEBLBEG_00156 124811 3 Gut 0.16 protein_coding synonymous_variant LOW 57T>C Tyr19Tyr
M0205562 PMEBLBEG_00156 124814 3 Gut 0.16 protein_coding synonymous_variant LOW 60A>G Glu20Glu
M0205563 PMEBLBEG_00156 124862 3 Gut 0.16 protein_coding synonymous_variant LOW 108T>C Ala36Ala
M0205564 PMEBLBEG_00156 124865 3 Gut 0.16 protein_coding synonymous_variant LOW 111A>G Thr37Thr
M0205565 PMEBLBEG_00156 124871 3 Gut 0.16 protein_coding synonymous_variant LOW 117T>C Asp39Asp
M0205566 PMEBLBEG_00156 124874 3 Gut 0.16 protein_coding synonymous_variant LOW 120C>T Asp40Asp
M0205567 PMEBLBEG_00156 124902 3 Gut 0.16 protein_coding missense_variant MODERATE 148G>A Val50Ile
M0205568 PMEBLBEG_00156 125069 3 Gut 0.16 protein_coding synonymous_variant LOW 315T>G Pro105Pro
M0205569 PMEBLBEG_00175 134117 3 Gut 0.16 protein_coding synonymous_variant LOW 933T>C Ser311Ser
M0205570 PMEBLBEG_00175 134729 3 Gut 0.16 protein_coding synonymous_variant LOW 321A>G Pro107Pro
M0205571 PMEBLBEG_00176 135178 3 Gut 0.16 protein_coding synonymous_variant LOW 21A>G Pro7Pro
M0205572 PMEBLBEG_00177 135761 3 Gut 0.16 protein_coding synonymous_variant LOW 663T>G Gly221Gly
M0205573 PMEBLBEG_00179 137177 3 Gut 0.16 protein_coding synonymous_variant LOW 426G>A Lys142Lys
M0205574 PMEBLBEG_00171 137762 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -4823C>T None
M0205575 PMEBLBEG_00171 137784 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -4845T>G None
M0205576 PMEBLBEG_00180 138034 3 Gut 0.16 protein_coding synonymous_variant LOW 135C>A Val45Val
M0205577 PMEBLBEG_00180 138041 3 Gut 0.16 protein_coding missense_variant MODERATE 128G>T Gly43Val
M0205578 PMEBLBEG_00181 138198 3 Gut 0.16 protein_coding synonymous_variant LOW 3213C>T Asp1071Asp
M0205579 PMEBLBEG_00181 138288 3 Gut 0.16 protein_coding synonymous_variant LOW 3123A>G Ala1041Ala
M0205580 PMEBLBEG_00181 138318 3 Gut 0.16 protein_coding synonymous_variant LOW 3093A>G Glu1031Glu
M0205581 PMEBLBEG_00181 138431 3 Gut 0.16 protein_coding synonymous_variant LOW 2980C>T Leu994Leu
M0205582 PMEBLBEG_00181 138504 3 Gut 0.16 protein_coding synonymous_variant LOW 2907A>G Leu969Leu
M0205583 PMEBLBEG_00181 138581 3 Gut 0.16 protein_coding missense_variant MODERATE 2830T>C Phe944Leu
M0205584 PMEBLBEG_00181 138603 3 Gut 0.16 protein_coding synonymous_variant LOW 2808C>T Gly936Gly
M0205585 PMEBLBEG_00181 138928 3 Gut 0.16 protein_coding missense_variant MODERATE 2483A>G Gln828Arg
M0205586 PMEBLBEG_00181 139072 3 Gut 0.16 protein_coding missense_variant MODERATE 2339A>G Asp780Gly
M0205587 PMEBLBEG_00181 139272 3 Gut 0.16 protein_coding synonymous_variant LOW 2139G>A Val713Val
M0205588 PMEBLBEG_00181 139356 3 Gut 0.16 protein_coding synonymous_variant LOW 2055T>C Cys685Cys
M0205589 PMEBLBEG_00181 139359 3 Gut 0.16 protein_coding synonymous_variant LOW 2052T>C Phe684Phe
M0205590 PMEBLBEG_00181 139453 3 Gut 0.16 protein_coding missense_variant MODERATE 1958T>C Met653Thr
M0205591 PMEBLBEG_00181 139455 3 Gut 0.16 protein_coding synonymous_variant LOW 1956T>C Leu652Leu
M0205592 PMEBLBEG_00181 139593 3 Gut 0.16 protein_coding synonymous_variant LOW 1818G>A Ala606Ala
M0205593 PMEBLBEG_00181 139701 3 Gut 0.16 protein_coding synonymous_variant LOW 1710T>A Gly570Gly
M0205594 PMEBLBEG_00181 139710 3 Gut 0.16 protein_coding synonymous_variant LOW 1701T>C Gly567Gly
M0205595 PMEBLBEG_00181 139939 3 Gut 0.16 protein_coding missense_variant MODERATE 1472G>A Arg491Gln
M0205596 PMEBLBEG_00181 140436 3 Gut 0.16 protein_coding synonymous_variant LOW 975T>C Gly325Gly
M0205597 PMEBLBEG_00181 140442 3 Gut 0.16 protein_coding synonymous_variant LOW 969G>A Pro323Pro
M0205598 PMEBLBEG_00181 140490 3 Gut 0.16 protein_coding synonymous_variant LOW 921G>A Ser307Ser
M0205599 PMEBLBEG_00181 140820 3 Gut 0.16 protein_coding synonymous_variant LOW 591T>C Cys197Cys
M0205600 PMEBLBEG_00181 140826 3 Gut 0.16 protein_coding synonymous_variant LOW 585A>G Val195Val
M0205601 PMEBLBEG_00181 140829 3 Gut 0.16 protein_coding synonymous_variant LOW 582G>A Thr194Thr
M0205602 PMEBLBEG_00181 140947 3 Gut 0.16 protein_coding missense_variant MODERATE 464G>A Ser155Asn
M0205603 PMEBLBEG_00181 140958 3 Gut 0.16 protein_coding missense_variant MODERATE 453C>A Asn151Lys
M0205604 PMEBLBEG_00181 141035 3 Gut 0.16 protein_coding synonymous_variant LOW 376T>C Leu126Leu
M0205605 PMEBLBEG_00181 141040 3 Gut 0.16 protein_coding missense_variant MODERATE 371G>C Cys124Ser
M0205606 PMEBLBEG_00181 141042 3 Gut 0.16 protein_coding synonymous_variant LOW 369G>A Ser123Ser
M0205607 PMEBLBEG_00181 141057 3 Gut 0.16 protein_coding synonymous_variant LOW 354G>A Thr118Thr
M0205608 PMEBLBEG_00181 141110 3 Gut 0.16 protein_coding missense_variant MODERATE 301A>C Met101Leu
M0205609 PMEBLBEG_00181 141264 3 Gut 0.16 protein_coding synonymous_variant LOW 147T>C Gly49Gly
M0205610 PMEBLBEG_00181 141267 3 Gut 0.16 protein_coding synonymous_variant LOW 144C>A Gly48Gly
M0205611 PMEBLBEG_00181 141276 3 Gut 0.16 protein_coding synonymous_variant LOW 135G>A Glu45Glu
M0205612 PMEBLBEG_00182 141509 3 Gut 0.16 protein_coding synonymous_variant LOW 303C>T Leu101Leu
M0205613 PMEBLBEG_00182 141551 3 Gut 0.16 protein_coding synonymous_variant LOW 261T>C Gly87Gly
M0205614 PMEBLBEG_00182 141569 3 Gut 0.16 protein_coding synonymous_variant LOW 243A>G Ala81Ala
M0205615 PMEBLBEG_00182 141737 3 Gut 0.16 protein_coding synonymous_variant LOW 75C>T Ile25Ile
M0205616 PMEBLBEG_00182 141740 3 Gut 0.16 protein_coding synonymous_variant LOW 72A>C Ser24Ser
M0205617 PMEBLBEG_00002 1063 3 Gut 0.16 protein_coding missense_variant MODERATE 47C>T Ser16Phe
M0205618 PMEBLBEG_00018 16451 4 Gut 0.21 protein_coding synonymous_variant LOW 2586A>G Leu862Leu
M0205619 PMEBLBEG_00018 16511 4 Gut 0.21 protein_coding synonymous_variant LOW 2526A>G Leu842Leu
M0205620 PMEBLBEG_00018 16529 4 Gut 0.21 protein_coding synonymous_variant LOW 2508C>T Thr836Thr
M0205621 PMEBLBEG_00018 16826 3 Gut 0.16 protein_coding synonymous_variant LOW 2211C>T Gly737Gly
M0205622 PMEBLBEG_00018 16874 3 Gut 0.16 protein_coding synonymous_variant LOW 2163G>A Lys721Lys
M0205623 PMEBLBEG_00018 16904 3 Gut 0.16 protein_coding synonymous_variant LOW 2133T>C Asp711Asp
M0205624 PMEBLBEG_00018 16955 3 Gut 0.16 protein_coding synonymous_variant LOW 2082A>C Pro694Pro
M0205625 PMEBLBEG_00018 17327 3 Gut 0.16 protein_coding synonymous_variant LOW 1710C>T Leu570Leu
M0205626 PMEBLBEG_00026 25859 3 Gut 0.16 protein_coding synonymous_variant LOW 132C>A Ser44Ser
M0205627 PMEBLBEG_00027 26140 3 Gut 0.16 protein_coding synonymous_variant LOW 678A>G Glu226Glu
M0205628 PMEBLBEG_00027 26142 3 Gut 0.16 protein_coding missense_variant MODERATE 676G>A Glu226Lys
M0205629 PMEBLBEG_00027 26601 3 Gut 0.16 protein_coding missense_variant MODERATE 217G>A Ala73Thr
M0205630 PMEBLBEG_00261 189081 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -556T>G None
M0205631 PMEBLBEG_00261 189303 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -334A>G None
M0205632 PMEBLBEG_00261 189451 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -186C>T None
M0205633 PMEBLBEG_00263 192726 3 Gut 0.16 protein_coding missense_variant MODERATE 143A>G Asp48Gly
M0205634 PMEBLBEG_00262 192907 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -1368C>A None
M0205635 PMEBLBEG_00018 16094 3 Gut 0.16 protein_coding synonymous_variant LOW 2943C>G Ala981Ala
M0205636 PMEBLBEG_00018 16859 3 Gut 0.16 protein_coding synonymous_variant LOW 2178C>A Ala726Ala
M0205637 PMEBLBEG_00018 17354 3 Gut 0.16 protein_coding synonymous_variant LOW 1683C>T Tyr561Tyr
M0205638 PMEBLBEG_00018 18770 3 Gut 0.16 protein_coding synonymous_variant LOW 267C>T Asn89Asn
M0205639 PMEBLBEG_00018 18838 3 Gut 0.16 protein_coding missense_variant MODERATE 199T>C Ser67Pro
M0205640 PMEBLBEG_00016 19348 3 Gut 0.16 protein_coding upstream_gene_variant MODIFIER -4444C>T None
M0205641 PMEBLBEG_00140 99859 3 Gut 0.16 protein_coding missense_variant MODERATE 1409G>A Gly470Asp
M0205642 PMEBLBEG_00140 99863 3 Gut 0.16 protein_coding synonymous_variant LOW 1413C>T Ala471Ala
M0205643 PMEBLBEG_00140 99888 3 Gut 0.16 protein_coding missense_variant MODERATE 1438G>A Ala480Thr
M0205644 PMEBLBEG_00140 99899 3 Gut 0.16 protein_coding synonymous_variant LOW 1449C>T Asp483Asp
M0205645 PMEBLBEG_00141 101851 3 Gut 0.16 protein_coding synonymous_variant LOW 225A>T Gly75Gly
M0205646 PMEBLBEG_00144 105227 3 Gut 0.16 protein_coding missense_variant MODERATE 2047T>G Ser683Ala
M0205647 PMEBLBEG_00144 105243 3 Gut 0.16 protein_coding synonymous_variant LOW 2031C>T Tyr677Tyr
M0205648 PMEBLBEG_00144 105249 3 Gut 0.16 protein_coding synonymous_variant LOW 2025G>A Lys675Lys
M0205649 PMEBLBEG_00144 105304 3 Gut 0.16 protein_coding missense_variant MODERATE 1970G>A Arg657Gln
M0205650 PMEBLBEG_00144 105315 3 Gut 0.16 protein_coding synonymous_variant LOW 1959C>T Ala653Ala
M0205651 PMEBLBEG_00144 105438 3 Gut 0.16 protein_coding synonymous_variant LOW 1836C>T Asp612Asp
M0205652 PMEBLBEG_00144 105550 3 Gut 0.16 protein_coding missense_variant MODERATE 1724A>G Asn575Ser
M0205653 PMEBLBEG_00144 105551 3 Gut 0.16 protein_coding missense_variant MODERATE 1723A>G Asn575Asp
M0205654 PMEBLBEG_00144 105553 3 Gut 0.16 protein_coding missense_variant MODERATE 1721C>T Thr574Ile
M0205655 PMEBLBEG_00144 105637 3 Gut 0.16 protein_coding missense_variant MODERATE 1637A>C Asp546Ala
M0205656 PMEBLBEG_00144 105645 3 Gut 0.16 protein_coding missense_variant MODERATE 1629C>A Asn543Lys
M0205657 PMEBLBEG_00144 105650 3 Gut 0.16 protein_coding missense_variant MODERATE 1624T>G Phe542Val
M0205658 PMEBLBEG_00144 105735 3 Gut 0.16 protein_coding missense_variant MODERATE 1539C>G Asn513Lys
M0205659 PMEBLBEG_00144 105747 3 Gut 0.16 protein_coding synonymous_variant LOW 1527C>T Thr509Thr
M0205660 PMEBLBEG_00144 106253 3 Gut 0.16 protein_coding missense_variant MODERATE 1021A>G Lys341Glu
M0205661 PMEBLBEG_00144 106552 3 Gut 0.16 protein_coding missense_variant MODERATE 722C>A Ala241Glu
M0205662 PMEBLBEG_00144 106854 3 Gut 0.16 protein_coding synonymous_variant LOW 420T>C Asn140Asn
M0205663 PMEBLBEG_00144 106858 3 Gut 0.16 protein_coding missense_variant MODERATE 416A>C Lys139Thr
M0205664 PMEBLBEG_00144 106863 3 Gut 0.16 protein_coding synonymous_variant LOW 411C>G Ala137Ala
M0205665 PMEBLBEG_00144 106909 3 Gut 0.16 protein_coding missense_variant MODERATE 365C>A Ala122Asp
M0205666 PMEBLBEG_00150 120736 3 Gut 0.16 protein_coding synonymous_variant LOW 519A>G Ala173Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term