Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1285
  Reference Plasmid   NZ_CP147881.1
  Reference Plasmid Size   358052
  Reference Plasmid GC Content   0.68
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0115938 DAEEIGMN_00095 110876 3 Skin 0.02 protein_coding synonymous_variant LOW 522A>G Arg174Arg
M0115939 DAEEIGMN_00212 232975 3 Skin 0.02 protein_coding missense_variant MODERATE 1493T>C Val498Ala
M0115940 DAEEIGMN_00216 237936 4 Skin 0.03 protein_coding missense_variant MODERATE 160C>T Arg54Trp
M0115941 DAEEIGMN_00086 98920 3 Skin 0.02 protein_coding synonymous_variant LOW 2079C>T Tyr693Tyr
M0115942 DAEEIGMN_00033 38411 3 Skin 0.02 protein_coding missense_variant MODERATE 4C>T Pro2Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
DAEEIGMN_00088 PHI:10246 prpA 77.1 2.1e-161 1 332 0.9970 0.9970 rodents brucellosis 4-hydroxyproline epimerase reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
DAEEIGMN_00031 ATR18878.1|GH15 100 0 1 612 1 1
DAEEIGMN_00115 UZO99117.1|GT4 100 3.6e-263 1 357 1 1
DAEEIGMN_00129 ATR18987.1|GH4 100 0 1 436 1 1
DAEEIGMN_00190 WAJ29215.1|GT0 71.3 1.91e-192 1 363 0.968 0.9837
DAEEIGMN_00191 ATR19030.1|GT4 100 6.67e-258 1 364 1 1
DAEEIGMN_00267 ATR19090.1|GT4 100 2.75e-247 1 376 1 1
DAEEIGMN_00320 UZO98907.1|GH31_2 100 0 1 786 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term