Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1301
  Reference Plasmid   NZ_CP148747.1
  Reference Plasmid Size   119421
  Reference Plasmid GC Content   0.47
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0205859 CIGMFIEK_00079 64109 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4897A>G None
M0205860 CIGMFIEK_00079 64144 8 Gut 0.89 protein_coding upstream_gene_variant MODIFIER -4932A>G None
M0205861 CIGMFIEK_00080 64266 8 Gut 0.89 protein_coding upstream_gene_variant MODIFIER -4533G>A None
M0205862 CIGMFIEK_00080 64279 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4546C>T None
M0205863 CIGMFIEK_00080 64286 8 Gut 0.89 protein_coding upstream_gene_variant MODIFIER -4553T>C None
M0205864 CIGMFIEK_00080 64304 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4571T>C None
M0205865 CIGMFIEK_00080 64305 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4572C>T None
M0205866 CIGMFIEK_00080 64319 8 Gut 0.89 protein_coding upstream_gene_variant MODIFIER -4586A>G None
M0205867 CIGMFIEK_00080 64320 8 Gut 0.89 protein_coding upstream_gene_variant MODIFIER -4587G>T None
M0205868 CIGMFIEK_00088 64514 8 Gut 0.89 protein_coding synonymous_variant LOW 108G>A Ser36Ser
M0205869 CIGMFIEK_00088 64547 7 Gut 0.78 protein_coding synonymous_variant LOW 141T>C Arg47Arg
M0205870 CIGMFIEK_00088 64550 7 Gut 0.78 protein_coding synonymous_variant LOW 144T>C Thr48Thr
M0205871 CIGMFIEK_00088 64565 7 Gut 0.78 protein_coding synonymous_variant LOW 159G>A Glu53Glu
M0205872 CIGMFIEK_00088 64568 7 Gut 0.78 protein_coding synonymous_variant LOW 162G>A Leu54Leu
M0205873 CIGMFIEK_00088 64571 7 Gut 0.78 protein_coding synonymous_variant LOW 165A>G Thr55Thr
M0205874 CIGMFIEK_00088 64580 7 Gut 0.78 protein_coding synonymous_variant LOW 174C>T Ser58Ser
M0205875 CIGMFIEK_00088 64592 8 Gut 0.89 protein_coding synonymous_variant LOW 186T>A Ala62Ala
M0205876 CIGMFIEK_00088 64595 7 Gut 0.78 protein_coding synonymous_variant LOW 189G>A Glu63Glu
M0205877 CIGMFIEK_00088 64628 7 Gut 0.78 protein_coding synonymous_variant LOW 222C>G Arg74Arg
M0205878 CIGMFIEK_00088 64724 8 Gut 0.89 protein_coding synonymous_variant LOW 318T>C Val106Val
M0205879 CIGMFIEK_00088 64751 7 Gut 0.78 protein_coding synonymous_variant LOW 345T>C Pro115Pro
M0205880 CIGMFIEK_00088 64766 7 Gut 0.78 protein_coding synonymous_variant LOW 360C>A Ser120Ser
M0205881 CIGMFIEK_00088 64790 8 Gut 0.89 protein_coding synonymous_variant LOW 384T>C Ser128Ser
M0205882 CIGMFIEK_00088 64802 7 Gut 0.78 protein_coding synonymous_variant LOW 396G>A Lys132Lys
M0205883 CIGMFIEK_00088 64826 7 Gut 0.78 protein_coding synonymous_variant LOW 420G>C Ser140Ser
M0205884 CIGMFIEK_00088 64835 7 Gut 0.78 protein_coding synonymous_variant LOW 429T>C Arg143Arg
M0205885 CIGMFIEK_00088 64901 7 Gut 0.78 protein_coding synonymous_variant LOW 495G>A Glu165Glu
M0205886 CIGMFIEK_00088 64925 7 Gut 0.78 protein_coding synonymous_variant LOW 519C>T Ala173Ala
M0205887 CIGMFIEK_00088 64937 7 Gut 0.78 protein_coding synonymous_variant LOW 531G>T Leu177Leu
M0205888 CIGMFIEK_00088 64964 7 Gut 0.78 protein_coding synonymous_variant LOW 558A>G Lys186Lys
M0205889 CIGMFIEK_00088 64973 7 Gut 0.78 protein_coding synonymous_variant LOW 567C>T Leu189Leu
M0205890 CIGMFIEK_00088 65063 8 Gut 0.89 protein_coding synonymous_variant LOW 657G>A Arg219Arg
M0205891 CIGMFIEK_00089 65242 7 Gut 0.78 protein_coding synonymous_variant LOW 102G>A Ala34Ala
M0205892 CIGMFIEK_00089 65274 5 Gut 0.56 protein_coding missense_variant MODERATE 134C>T Pro45Leu
M0205893 CIGMFIEK_00089 65309 7 Gut 0.78 protein_coding missense_variant MODERATE 169G>A Ala57Thr
M0205894 CIGMFIEK_00089 65332 7 Gut 0.78 protein_coding synonymous_variant LOW 192G>A Glu64Glu
M0205895 CIGMFIEK_00083 65628 8 Gut 0.89 protein_coding upstream_gene_variant MODIFIER -4276G>A None
M0205896 CIGMFIEK_00083 65635 8 Gut 0.89 protein_coding upstream_gene_variant MODIFIER -4283A>C None
M0205897 CIGMFIEK_00090 65669 7 Gut 0.78 protein_coding splice_region_variant&stop_retained_variant LOW 740G>A Ter247Ter
M0205898 CIGMFIEK_00090 65713 8 Gut 0.89 protein_coding synonymous_variant LOW 696G>T Gly232Gly
M0205899 CIGMFIEK_00090 65758 7 Gut 0.78 protein_coding synonymous_variant LOW 651G>A Ala217Ala
M0205900 CIGMFIEK_00090 65767 7 Gut 0.78 protein_coding synonymous_variant LOW 642A>G Arg214Arg
M0205901 CIGMFIEK_00090 65769 7 Gut 0.78 protein_coding synonymous_variant LOW 640A>C Arg214Arg
M0205902 CIGMFIEK_00090 65770 7 Gut 0.78 protein_coding synonymous_variant LOW 639C>G Thr213Thr
M0205903 CIGMFIEK_00090 65803 8 Gut 0.89 protein_coding synonymous_variant LOW 606G>T Gly202Gly
M0205904 CIGMFIEK_00090 65806 8 Gut 0.89 protein_coding synonymous_variant LOW 603C>T Ala201Ala
M0205905 CIGMFIEK_00090 65875 8 Gut 0.89 protein_coding synonymous_variant LOW 534G>C Thr178Thr
M0205906 CIGMFIEK_00090 65878 7 Gut 0.78 protein_coding synonymous_variant LOW 531C>T His177His
M0205907 CIGMFIEK_00090 65914 8 Gut 0.89 protein_coding synonymous_variant LOW 495A>T Ala165Ala
M0205908 CIGMFIEK_00090 65962 8 Gut 0.89 protein_coding synonymous_variant LOW 447T>C Asp149Asp
M0205909 CIGMFIEK_00090 66067 7 Gut 0.78 protein_coding synonymous_variant LOW 342A>G Glu114Glu
M0205910 CIGMFIEK_00090 66134 8 Gut 0.89 protein_coding missense_variant MODERATE 275C>T Ala92Val
M0205911 CIGMFIEK_00090 66259 8 Gut 0.89 protein_coding synonymous_variant LOW 150C>G Val50Val
M0205912 CIGMFIEK_00090 66301 8 Gut 0.89 protein_coding synonymous_variant LOW 108C>T Thr36Thr
M0205913 CIGMFIEK_00090 66379 4 Gut 0.44 protein_coding synonymous_variant LOW 30A>G Ser10Ser
M0205914 CIGMFIEK_00084 66550 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3997T>C None
M0205915 CIGMFIEK_00084 66571 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4018G>A None
M0205916 CIGMFIEK_00084 66572 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4019T>A None
M0205917 CIGMFIEK_00084 66573 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4020C>T None
M0205918 CIGMFIEK_00084 66600 8 Gut 0.89 protein_coding upstream_gene_variant MODIFIER -4047C>T None
M0205919 CIGMFIEK_00091 66676 7 Gut 0.78 protein_coding missense_variant MODERATE 34G>A Val12Ile
M0205920 CIGMFIEK_00091 66698 7 Gut 0.78 protein_coding missense_variant MODERATE 56A>G Glu19Gly
M0205921 CIGMFIEK_00091 66709 7 Gut 0.78 protein_coding missense_variant MODERATE 67G>A Glu23Lys
M0205922 CIGMFIEK_00091 66750 8 Gut 0.89 protein_coding synonymous_variant LOW 108C>T Gly36Gly
M0205923 CIGMFIEK_00091 66751 7 Gut 0.78 protein_coding missense_variant MODERATE 109A>G Thr37Ala
M0205924 CIGMFIEK_00092 66859 7 Gut 0.78 protein_coding synonymous_variant LOW 33G>A Glu11Glu
M0205925 CIGMFIEK_00092 66907 7 Gut 0.78 protein_coding synonymous_variant LOW 81A>C Ala27Ala
M0205926 CIGMFIEK_00092 66916 7 Gut 0.78 protein_coding synonymous_variant LOW 90T>C Thr30Thr
M0205927 CIGMFIEK_00092 66919 7 Gut 0.78 protein_coding synonymous_variant LOW 93C>A Ala31Ala
M0205928 CIGMFIEK_00092 66962 7 Gut 0.78 protein_coding missense_variant MODERATE 136T>G Ser46Ala
M0205929 CIGMFIEK_00092 66964 7 Gut 0.78 protein_coding synonymous_variant LOW 138A>G Ser46Ser
M0205930 CIGMFIEK_00092 67013 7 Gut 0.78 protein_coding synonymous_variant LOW 187C>T Leu63Leu
M0205931 CIGMFIEK_00092 67038 7 Gut 0.78 protein_coding missense_variant MODERATE 212C>A Thr71Asn
M0205932 CIGMFIEK_00092 67055 7 Gut 0.78 protein_coding missense_variant MODERATE 229A>G Ile77Val
M0205933 CIGMFIEK_00092 67090 7 Gut 0.78 protein_coding synonymous_variant LOW 264T>C Tyr88Tyr
M0205934 CIGMFIEK_00092 67101 7 Gut 0.78 protein_coding missense_variant MODERATE 275A>C Lys92Thr
M0205935 CIGMFIEK_00092 67106 7 Gut 0.78 protein_coding missense_variant MODERATE 280A>C Asn94His
M0205936 CIGMFIEK_00092 67108 7 Gut 0.78 protein_coding missense_variant MODERATE 282T>A Asn94Lys
M0205937 CIGMFIEK_00092 67138 7 Gut 0.78 protein_coding synonymous_variant LOW 312G>A Leu104Leu
M0205938 CIGMFIEK_00092 67139 7 Gut 0.78 protein_coding missense_variant MODERATE 313G>A Glu105Lys
M0205939 CIGMFIEK_00092 67141 7 Gut 0.78 protein_coding missense_variant MODERATE 315A>C Glu105Asp
M0205940 CIGMFIEK_00092 67148 7 Gut 0.78 protein_coding missense_variant MODERATE 322C>G Pro108Ala
M0205941 CIGMFIEK_00092 67153 7 Gut 0.78 protein_coding synonymous_variant LOW 327G>A Ala109Ala
M0205942 CIGMFIEK_00092 67163 7 Gut 0.78 protein_coding missense_variant MODERATE 337A>T Ser113Cys
M0205943 CIGMFIEK_00092 67164 7 Gut 0.78 protein_coding missense_variant MODERATE 338G>C Ser113Thr
M0205944 CIGMFIEK_00092 67165 7 Gut 0.78 protein_coding missense_variant MODERATE 339C>G Ser113Arg
M0205945 CIGMFIEK_00092 67269 7 Gut 0.78 protein_coding missense_variant MODERATE 443A>G Asn148Ser
M0205946 CIGMFIEK_00092 67271 7 Gut 0.78 protein_coding missense_variant MODERATE 445A>T Asn149Tyr
M0205947 CIGMFIEK_00092 67272 8 Gut 0.89 protein_coding missense_variant MODERATE 446A>C Asn149Thr
M0205948 CIGMFIEK_00092 67287 7 Gut 0.78 protein_coding missense_variant MODERATE 461A>C Asn154Thr
M0205949 CIGMFIEK_00092 67313 8 Gut 0.89 protein_coding missense_variant MODERATE 487A>G Ser163Gly
M0205950 CIGMFIEK_00092 67326 7 Gut 0.78 protein_coding missense_variant MODERATE 500C>T Ser167Leu
M0205951 CIGMFIEK_00093 67466 7 Gut 0.78 protein_coding missense_variant MODERATE 25C>A His9Asn
M0205952 CIGMFIEK_00093 67468 7 Gut 0.78 protein_coding synonymous_variant LOW 27T>C His9His
M0205953 CIGMFIEK_00093 67570 8 Gut 0.89 protein_coding synonymous_variant LOW 129A>G Gln43Gln
M0205954 CIGMFIEK_00093 67595 7 Gut 0.78 protein_coding missense_variant MODERATE 154G>A Ala52Thr
M0205955 CIGMFIEK_00093 67606 8 Gut 0.89 protein_coding synonymous_variant LOW 165C>T Asp55Asp
M0205956 CIGMFIEK_00093 67617 7 Gut 0.78 protein_coding missense_variant MODERATE 176T>A Ile59Lys
M0205957 CIGMFIEK_00093 67760 7 Gut 0.78 protein_coding synonymous_variant LOW 319T>C Leu107Leu
M0205958 CIGMFIEK_00093 67763 7 Gut 0.78 protein_coding synonymous_variant LOW 322T>C Leu108Leu
M0205959 CIGMFIEK_00093 67791 8 Gut 0.89 protein_coding missense_variant MODERATE 350T>G Met117Arg
M0205960 CIGMFIEK_00094 67978 7 Gut 0.78 protein_coding synonymous_variant LOW 117T>C Asp39Asp
M0205961 CIGMFIEK_00094 68003 8 Gut 0.89 protein_coding missense_variant MODERATE 142G>A Glu48Lys
M0205962 CIGMFIEK_00094 68089 7 Gut 0.78 protein_coding synonymous_variant LOW 228A>G Glu76Glu
M0205963 CIGMFIEK_00094 68113 7 Gut 0.78 protein_coding synonymous_variant LOW 252C>T Gly84Gly
M0205964 CIGMFIEK_00094 68118 7 Gut 0.78 protein_coding missense_variant MODERATE 257G>A Arg86His
M0205965 CIGMFIEK_00094 68236 8 Gut 0.89 protein_coding synonymous_variant LOW 375A>G Gly125Gly
M0205966 CIGMFIEK_00094 68261 7 Gut 0.78 protein_coding missense_variant MODERATE 400G>A Ala134Thr
M0205967 CIGMFIEK_00094 68269 8 Gut 0.89 protein_coding synonymous_variant LOW 408A>G Ala136Ala
M0205968 CIGMFIEK_00094 68321 8 Gut 0.89 protein_coding missense_variant MODERATE 460A>C Ile154Leu
M0205969 CIGMFIEK_00094 68331 8 Gut 0.89 protein_coding missense_variant MODERATE 470G>A Gly157Glu
M0205970 CIGMFIEK_00094 68347 8 Gut 0.89 protein_coding synonymous_variant LOW 486C>T His162His
M0205971 CIGMFIEK_00094 68448 7 Gut 0.78 protein_coding missense_variant MODERATE 587T>C Val196Ala
M0205972 CIGMFIEK_00094 68539 8 Gut 0.89 protein_coding synonymous_variant LOW 678C>T Asn226Asn
M0205973 CIGMFIEK_00094 68551 7 Gut 0.78 protein_coding synonymous_variant LOW 690C>A Gly230Gly
M0205974 CIGMFIEK_00094 68560 7 Gut 0.78 protein_coding synonymous_variant LOW 699C>A Gly233Gly
M0205975 CIGMFIEK_00094 68833 7 Gut 0.78 protein_coding synonymous_variant LOW 972C>T Asp324Asp
M0205976 CIGMFIEK_00094 69450 8 Gut 0.89 protein_coding missense_variant MODERATE 1589A>G Asn530Ser
M0205977 CIGMFIEK_00095 69897 7 Gut 0.78 protein_coding synonymous_variant LOW 381A>G Val127Val
M0205978 CIGMFIEK_00095 70011 7 Gut 0.78 protein_coding synonymous_variant LOW 495C>T Gly165Gly
M0205979 CIGMFIEK_00095 70114 7 Gut 0.78 protein_coding missense_variant MODERATE 598A>G Asn200Asp
M0205980 CIGMFIEK_00095 70355 7 Gut 0.78 protein_coding missense_variant MODERATE 839G>T Gly280Val
M0205981 CIGMFIEK_00095 70455 8 Gut 0.89 protein_coding synonymous_variant LOW 939A>G Ser313Ser
M0205982 CIGMFIEK_00095 70488 8 Gut 0.89 protein_coding synonymous_variant LOW 972G>A Gln324Gln
M0205983 CIGMFIEK_00095 70603 7 Gut 0.78 protein_coding missense_variant MODERATE 1087A>C Asn363His
M0205984 CIGMFIEK_00095 70791 7 Gut 0.78 protein_coding synonymous_variant LOW 1275A>G Thr425Thr
M0205985 CIGMFIEK_00095 71079 6 Gut 0.67 protein_coding synonymous_variant LOW 1563C>T Val521Val
M0205986 CIGMFIEK_00095 71137 7 Gut 0.78 protein_coding missense_variant MODERATE 1621A>G Met541Val
M0205987 CIGMFIEK_00095 71158 6 Gut 0.67 protein_coding missense_variant MODERATE 1642G>A Asp548Asn
M0205988 CIGMFIEK_00096 71368 6 Gut 0.67 protein_coding synonymous_variant LOW 108C>T His36His
M0205989 CIGMFIEK_00096 71513 7 Gut 0.78 protein_coding synonymous_variant LOW 253T>C Leu85Leu
M0205990 CIGMFIEK_00096 71752 6 Gut 0.67 protein_coding synonymous_variant LOW 492C>T Arg164Arg
M0205991 CIGMFIEK_00096 71953 6 Gut 0.67 protein_coding synonymous_variant LOW 693C>T Asn231Asn
M0205992 CIGMFIEK_00096 72043 6 Gut 0.67 protein_coding synonymous_variant LOW 783G>A Glu261Glu
M0205993 CIGMFIEK_00096 72310 6 Gut 0.67 protein_coding synonymous_variant LOW 1050C>T Ala350Ala
M0205994 CIGMFIEK_00096 72405 6 Gut 0.67 protein_coding missense_variant MODERATE 1145G>A Arg382Lys
M0205995 CIGMFIEK_00096 72413 7 Gut 0.78 protein_coding missense_variant MODERATE 1153A>G Asn385Asp
M0205996 CIGMFIEK_00096 72414 6 Gut 0.67 protein_coding missense_variant MODERATE 1154A>C Asn385Thr
M0205997 CIGMFIEK_00097 73081 7 Gut 0.78 protein_coding synonymous_variant LOW 267T>C Ala89Ala
M0205998 CIGMFIEK_00097 73183 6 Gut 0.67 protein_coding synonymous_variant LOW 369A>T Pro123Pro
M0205999 CIGMFIEK_00097 73382 3 Gut 0.33 protein_coding synonymous_variant LOW 568C>T Leu190Leu
M0206000 CIGMFIEK_00098 73890 6 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -5G>A None
M0206001 CIGMFIEK_00098 73901 6 Gut 0.67 protein_coding missense_variant MODERATE 7A>G Ile3Val
M0206002 CIGMFIEK_00098 74839 3 Gut 0.33 protein_coding missense_variant MODERATE 945C>A Asn315Lys
M0206003 CIGMFIEK_00099 74941 6 Gut 0.67 protein_coding synonymous_variant LOW 84G>T Leu28Leu
M0206004 CIGMFIEK_00099 75350 6 Gut 0.67 protein_coding missense_variant MODERATE 493G>A Ala165Thr
M0206005 CIGMFIEK_00099 75493 7 Gut 0.78 protein_coding synonymous_variant LOW 636A>G Leu212Leu
M0206006 CIGMFIEK_00100 75687 7 Gut 0.78 protein_coding synonymous_variant LOW 99G>T Thr33Thr
M0206007 CIGMFIEK_00100 75993 7 Gut 0.78 protein_coding synonymous_variant LOW 405G>T Gly135Gly
M0206008 CIGMFIEK_00101 76044 6 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -12C>T None
M0206009 CIGMFIEK_00101 76199 7 Gut 0.78 protein_coding synonymous_variant LOW 144G>A Ala48Ala
M0206010 CIGMFIEK_00101 76359 7 Gut 0.78 protein_coding missense_variant MODERATE 304C>T His102Tyr
M0206011 CIGMFIEK_00101 76394 6 Gut 0.67 protein_coding synonymous_variant LOW 339G>A Gly113Gly
M0206012 CIGMFIEK_00101 76540 6 Gut 0.67 protein_coding missense_variant MODERATE 485C>T Ser162Leu
M0206013 CIGMFIEK_00102 76705 7 Gut 0.78 protein_coding synonymous_variant LOW 108G>A Glu36Glu
M0206014 CIGMFIEK_00103 77189 6 Gut 0.67 protein_coding synonymous_variant LOW 51A>G Ala17Ala
M0206015 CIGMFIEK_00103 77228 7 Gut 0.78 protein_coding synonymous_variant LOW 90T>G Gly30Gly
M0206016 CIGMFIEK_00103 77279 7 Gut 0.78 protein_coding synonymous_variant LOW 141C>A Ala47Ala
M0206017 CIGMFIEK_00103 77350 6 Gut 0.67 protein_coding missense_variant MODERATE 212C>T Ala71Val
M0206018 CIGMFIEK_00103 77431 7 Gut 0.78 protein_coding missense_variant MODERATE 293A>G Asn98Ser
M0206019 CIGMFIEK_00104 77702 7 Gut 0.78 protein_coding missense_variant MODERATE 73T>C Cys25Arg
M0206020 CIGMFIEK_00104 77764 6 Gut 0.67 protein_coding synonymous_variant LOW 135A>T Thr45Thr
M0206021 CIGMFIEK_00104 77807 7 Gut 0.78 protein_coding missense_variant MODERATE 178A>G Ser60Gly
M0206022 CIGMFIEK_00105 78180 6 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -187G>A None
M0206023 CIGMFIEK_00105 78191 6 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -176A>C None
M0206024 CIGMFIEK_00105 78297 6 Gut 0.67 protein_coding upstream_gene_variant MODIFIER -70A>G None
M0206025 CIGMFIEK_00105 78528 6 Gut 0.67 protein_coding synonymous_variant LOW 162C>T Ser54Ser
M0206026 CIGMFIEK_00105 78615 6 Gut 0.67 protein_coding synonymous_variant LOW 249G>T Gly83Gly
M0206027 CIGMFIEK_00091 66784 3 Gut 0.33 protein_coding missense_variant MODERATE 142C>T Arg48Cys
M0206028 CIGMFIEK_00092 67278 3 Gut 0.33 protein_coding missense_variant MODERATE 452C>A Ala151Asp
M0206029 CIGMFIEK_00095 69780 3 Gut 0.33 protein_coding synonymous_variant LOW 264G>A Leu88Leu
M0206030 CIGMFIEK_00095 70329 3 Gut 0.33 protein_coding synonymous_variant LOW 813A>G Gly271Gly
M0206031 CIGMFIEK_00096 72010 3 Gut 0.33 protein_coding synonymous_variant LOW 750C>T Thr250Thr
M0206032 CIGMFIEK_00102 76979 3 Gut 0.33 protein_coding missense_variant MODERATE 382A>G Ile128Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
CIGMFIEK_00092 VFG042784 BFP 85.6 3.4e-80 1 193 1.0 1 Adherence major pilin structural unit bundlin experiment
CIGMFIEK_00093 VFG000750 BFP 96.1 8.1e-68 11 137 0.927 0.9549 Adherence BFP biogenesis protein BfpG experiment
CIGMFIEK_00094 VFG000751 BFP 98.7 1.5e-298 1 552 1.0 1 Adherence BfpB secretin experiment
CIGMFIEK_00095 VFG000752 BFP 99.5 1.6e-239 1 400 0.7156 0.995 Adherence BfpC, bitopic inner membrane protein experiment
CIGMFIEK_00096 VFG042789 BFP 99.4 6.8e-293 10 515 0.9825 0.9458 Adherence assembly ATPase experiment
CIGMFIEK_00097 VFG000755 BFP 100 3.3e-198 1 352 1.0 1 Adherence BfpE, polytopic inner membrane protein experiment
CIGMFIEK_00098 VFG042791 BFP 99.7 9.1e-179 1 318 1.0 0.9607 Adherence retraction ATPase experiment
CIGMFIEK_00099 VFG000757 BFP 99.2 5.7e-144 1 249 1.0 1 Adherence prepilin peptidase BfpP experiment
CIGMFIEK_00100 VFG042793 BFP 98.6 1.6e-82 1 148 1.0 1 Adherence lipoprotein experiment
CIGMFIEK_00101 VFG042794 BFP 98.3 2.5e-96 1 181 1.0 1 Adherence minor pilin subunit BfpI experiment
CIGMFIEK_00102 VFG000760 BFP 100 8.8e-102 1 183 1.0 1 Adherence minor pilin subunit BfpJ experiment
CIGMFIEK_00103 VFG042796 BFP 98.8 1.6e-86 1 162 1.0 1 Adherence minor pilin subunit BfpK experiment
CIGMFIEK_00104 VFG000762 BFP 98.7 4.5e-80 1 149 1.0 1 Adherence BFP biogenesis protein BfpL experiment
CIGMFIEK_00126 VFG042219 TTSS secreted effectors 83.3 6.2e-63 1 132 0.9429 0.7213 Effector delivery system Type III secretion system effector EspT, Rho guanine exchange factor experiment
CIGMFIEK_00144 VFG000764 Per 95.3 4.1e-69 1 129 1.0 1 Regulation BfpV experiment
CIGMFIEK_00145 VFG000765 Per 98.9 2.2e-45 1 89 1.0 1 Regulation BfpW experiment
CIGMFIEK_00092 VFG042784 BFP 85.6 2.6e-79 1 193 1.0 1 Adherence major pilin structural unit bundlin prediction
CIGMFIEK_00093 VFG000750 BFP 96.1 6.1e-67 11 137 0.927 0.9549 Adherence BFP biogenesis protein BfpG prediction
CIGMFIEK_00094 VFG000751 BFP 98.7 1.1e-297 1 552 1.0 1 Adherence BfpB secretin prediction
CIGMFIEK_00095 VFG000752 BFP 99.5 1.2e-238 1 400 0.7156 0.995 Adherence BfpC, bitopic inner membrane protein prediction
CIGMFIEK_00096 VFG042789 BFP 99.4 5.1e-292 10 515 0.9825 0.9458 Adherence assembly ATPase prediction
CIGMFIEK_00097 VFG000755 BFP 100 2.5e-197 1 352 1.0 1 Adherence BfpE, polytopic inner membrane protein prediction
CIGMFIEK_00098 VFG042791 BFP 99.7 6.8e-178 1 318 1.0 0.9607 Adherence retraction ATPase prediction
CIGMFIEK_00099 VFG000757 BFP 99.2 4.2e-143 1 249 1.0 1 Adherence prepilin peptidase BfpP prediction
CIGMFIEK_00100 VFG042793 BFP 98.6 1.2e-81 1 148 1.0 1 Adherence lipoprotein prediction
CIGMFIEK_00101 VFG042794 BFP 98.3 1.8e-95 1 181 1.0 1 Adherence minor pilin subunit BfpI prediction
CIGMFIEK_00102 VFG000760 BFP 100 6.6e-101 1 183 1.0 1 Adherence minor pilin subunit BfpJ prediction
CIGMFIEK_00103 VFG042796 BFP 98.8 1.2e-85 1 162 1.0 1 Adherence minor pilin subunit BfpK prediction
CIGMFIEK_00104 VFG000762 BFP 98.7 3.4e-79 1 149 1.0 1 Adherence BFP biogenesis protein BfpL prediction
CIGMFIEK_00113 VFG041523 T3SS 79.8 2.7e-98 1 213 1.0 1 Effector delivery system T3SS effector NleG family protein prediction
CIGMFIEK_00126 VFG042219 TTSS secreted effectors 83.3 4.6e-62 1 132 0.9429 0.7213 Effector delivery system Type III secretion system effector EspT, Rho guanine exchange factor prediction
CIGMFIEK_00144 VFG000764 Per 95.3 3e-68 1 129 1.0 1 Regulation BfpV prediction
CIGMFIEK_00145 VFG000765 Per 98.9 1.6e-44 1 89 1.0 1 Regulation BfpW prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
CIGMFIEK_00142 PHI:3803 PerA 95.4 4e-54 1 108 0.9153 0.9708 nematodes hemorrhagic colitis; hemolytic uremic syndrome LPS O-side chain reduced virulence
CIGMFIEK_00143 PHI:3803 PerA 95.6 5.7e-80 1 158 1.0000 0.9708 nematodes hemorrhagic colitis; hemolytic uremic syndrome LPS O-side chain reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CIGMFIEK_00053 AVL11885.1|GH23 99 5.8e-145 1 200 1 1
CIGMFIEK_00100 BAU62016.1|GH23 99.3 9.28e-103 1 148 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
CIGMFIEK_00094 1.B.22.7.1 98.7 9e-298 1 552 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.22 The Outer Bacterial Membrane Secretin (Secretin) Family