Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1303
  Reference Plasmid   NZ_CP149345.1
  Reference Plasmid Size   58440
  Reference Plasmid GC Content   0.46
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0206034 MFBJLJKI_00001 319 3 Gut 0.75 protein_coding missense_variant MODERATE 196A>G Ile66Val
M0206035 MFBJLJKI_00003 1460 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -33G>A None
M0206036 MFBJLJKI_00003 1552 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -125A>G None
M0206037 MFBJLJKI_00004 1780 3 Gut 0.75 protein_coding synonymous_variant LOW 231G>T Gly77Gly
M0206038 MFBJLJKI_00004 1792 3 Gut 0.75 protein_coding synonymous_variant LOW 219G>A Val73Val
M0206039 MFBJLJKI_00004 1859 3 Gut 0.75 protein_coding missense_variant MODERATE 152C>T Ala51Val
M0206040 MFBJLJKI_00004 1951 3 Gut 0.75 protein_coding synonymous_variant LOW 60C>A Ile20Ile
M0206041 MFBJLJKI_00004 1972 3 Gut 0.75 protein_coding synonymous_variant LOW 39A>T Arg13Arg
M0206042 MFBJLJKI_00003 4343 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2916G>A None
M0206043 MFBJLJKI_00003 4345 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2918T>C None
M0206044 MFBJLJKI_00003 4412 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2985G>A None
M0206045 MFBJLJKI_00003 4449 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3022T>C None
M0206046 MFBJLJKI_00003 4476 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3049A>G None
M0206047 MFBJLJKI_00003 4570 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3143T>C None
M0206048 MFBJLJKI_00003 4571 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3144T>G None
M0206049 MFBJLJKI_00003 4577 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3150A>G None
M0206050 MFBJLJKI_00003 4585 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3158C>T None
M0206051 MFBJLJKI_00003 4586 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3159A>G None
M0206052 MFBJLJKI_00003 4596 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3169C>A None
M0206053 MFBJLJKI_00003 4597 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3170T>C None
M0206054 MFBJLJKI_00003 4606 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3179A>G None
M0206055 MFBJLJKI_00003 4668 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3241G>A None
M0206056 MFBJLJKI_00003 4792 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3365A>G None
M0206057 MFBJLJKI_00003 4861 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3434G>A None
M0206058 MFBJLJKI_00003 4890 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3463G>A None
M0206059 MFBJLJKI_00003 4907 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3480T>C None
M0206060 MFBJLJKI_00003 4933 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3506T>C None
M0206061 MFBJLJKI_00003 4947 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3520T>C None
M0206062 MFBJLJKI_00008 5218 3 Gut 0.75 protein_coding synonymous_variant LOW 27C>T Arg9Arg
M0206063 MFBJLJKI_00008 5278 3 Gut 0.75 protein_coding synonymous_variant LOW 87G>A Lys29Lys
M0206064 MFBJLJKI_00005 7728 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4872G>A None
M0206065 MFBJLJKI_00005 7754 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4898C>T None
M0206066 MFBJLJKI_00005 7800 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4944A>G None
M0206067 MFBJLJKI_00005 7808 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4952G>A None
M0206068 MFBJLJKI_00006 7869 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -4153C>T None
M0206069 MFBJLJKI_00016 7985 3 Gut 0.75 protein_coding synonymous_variant LOW 75A>G Pro25Pro
M0206070 MFBJLJKI_00016 8027 3 Gut 0.75 protein_coding synonymous_variant LOW 117G>A Leu39Leu
M0206071 MFBJLJKI_00016 8056 3 Gut 0.75 protein_coding missense_variant MODERATE 146G>T Gly49Val
M0206072 MFBJLJKI_00016 8244 3 Gut 0.75 protein_coding synonymous_variant LOW 334T>C Leu112Leu
M0206073 MFBJLJKI_00017 8483 3 Gut 0.75 protein_coding missense_variant MODERATE 25T>C Tyr9His
M0206074 MFBJLJKI_00017 8536 3 Gut 0.75 protein_coding synonymous_variant LOW 78T>C His26His
M0206075 MFBJLJKI_00017 8639 3 Gut 0.75 protein_coding missense_variant MODERATE 181G>A Val61Ile
M0206076 MFBJLJKI_00017 8746 3 Gut 0.75 protein_coding synonymous_variant LOW 288G>A Glu96Glu
M0206077 MFBJLJKI_00017 8755 3 Gut 0.75 protein_coding missense_variant MODERATE 297T>G Asp99Glu
M0206078 MFBJLJKI_00017 8785 3 Gut 0.75 protein_coding synonymous_variant LOW 327A>G Gln109Gln
M0206079 MFBJLJKI_00017 8869 3 Gut 0.75 protein_coding synonymous_variant LOW 411A>G Lys137Lys
M0206080 MFBJLJKI_00017 8944 3 Gut 0.75 protein_coding synonymous_variant LOW 486T>C Tyr162Tyr
M0206081 MFBJLJKI_00017 8947 3 Gut 0.75 protein_coding synonymous_variant LOW 489T>C His163His
M0206082 MFBJLJKI_00017 8953 3 Gut 0.75 protein_coding synonymous_variant LOW 495C>T Asp165Asp
M0206083 MFBJLJKI_00017 9019 3 Gut 0.75 protein_coding synonymous_variant LOW 561C>T Asp187Asp
M0206084 MFBJLJKI_00017 9191 3 Gut 0.75 protein_coding missense_variant MODERATE 733G>A Val245Ile
M0206085 MFBJLJKI_00017 9199 3 Gut 0.75 protein_coding synonymous_variant LOW 741C>T Tyr247Tyr
M0206086 MFBJLJKI_00017 9397 3 Gut 0.75 protein_coding synonymous_variant LOW 939C>T Asn313Asn
M0206087 MFBJLJKI_00017 9490 3 Gut 0.75 protein_coding synonymous_variant LOW 1032C>T Ser344Ser
M0206088 MFBJLJKI_00017 9610 3 Gut 0.75 protein_coding synonymous_variant LOW 1152G>A Lys384Lys
M0206089 MFBJLJKI_00017 9617 3 Gut 0.75 protein_coding missense_variant MODERATE 1159A>G Ser387Gly
M0206090 MFBJLJKI_00017 9619 3 Gut 0.75 protein_coding synonymous_variant LOW 1161T>C Ser387Ser
M0206091 MFBJLJKI_00018 9626 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -800G>T None
M0206092 MFBJLJKI_00018 9634 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -792A>G None
M0206093 MFBJLJKI_00018 9646 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -780A>C None
M0206094 MFBJLJKI_00018 9647 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -779A>G None
M0206095 MFBJLJKI_00018 9656 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -770C>A None
M0206096 MFBJLJKI_00018 9671 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -755T>C None
M0206097 MFBJLJKI_00018 9672 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -754G>T None
M0206098 MFBJLJKI_00018 9675 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -751A>C None
M0206099 MFBJLJKI_00018 9686 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -740G>A None
M0206100 MFBJLJKI_00018 9762 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -664T>G None
M0206101 MFBJLJKI_00018 9778 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -648C>T None
M0206102 MFBJLJKI_00018 9779 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -647A>G None
M0206103 MFBJLJKI_00018 9783 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -643A>C None
M0206104 MFBJLJKI_00018 9789 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -637T>C None
M0206105 MFBJLJKI_00018 9790 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -636G>A None
M0206106 MFBJLJKI_00018 9850 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -576A>T None
M0206107 MFBJLJKI_00018 9860 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -566C>T None
M0206108 MFBJLJKI_00018 9861 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -565T>C None
M0206109 MFBJLJKI_00019 10781 3 Gut 0.75 protein_coding synonymous_variant LOW 111A>G Ala37Ala
M0206110 MFBJLJKI_00019 10847 3 Gut 0.75 protein_coding synonymous_variant LOW 177A>T Pro59Pro
M0206111 MFBJLJKI_00019 10931 3 Gut 0.75 protein_coding synonymous_variant LOW 261A>G Thr87Thr
M0206112 MFBJLJKI_00019 10952 3 Gut 0.75 protein_coding synonymous_variant LOW 282C>T Phe94Phe
M0206113 MFBJLJKI_00019 10955 3 Gut 0.75 protein_coding synonymous_variant LOW 285C>T Gly95Gly
M0206114 MFBJLJKI_00019 11167 3 Gut 0.75 protein_coding missense_variant MODERATE 497T>G Ile166Ser
M0206115 MFBJLJKI_00019 11180 3 Gut 0.75 protein_coding synonymous_variant LOW 510C>T Pro170Pro
M0206116 MFBJLJKI_00020 11562 3 Gut 0.75 protein_coding synonymous_variant LOW 267T>C Val89Val
M0206117 MFBJLJKI_00021 11745 3 Gut 0.75 protein_coding synonymous_variant LOW 135T>C Leu45Leu
M0206118 MFBJLJKI_00021 11839 3 Gut 0.75 protein_coding missense_variant MODERATE 229T>C Ser77Pro
M0206119 MFBJLJKI_00021 11874 3 Gut 0.75 protein_coding synonymous_variant LOW 264T>C Tyr88Tyr
M0206120 MFBJLJKI_00021 11890 3 Gut 0.75 protein_coding missense_variant MODERATE 280G>A Asp94Asn
M0206121 MFBJLJKI_00021 11985 3 Gut 0.75 protein_coding synonymous_variant LOW 375C>T Asp125Asp
M0206122 MFBJLJKI_00021 11988 3 Gut 0.75 protein_coding synonymous_variant LOW 378C>T Asn126Asn
M0206123 MFBJLJKI_00021 12000 3 Gut 0.75 protein_coding synonymous_variant LOW 390G>A Thr130Thr
M0206124 MFBJLJKI_00021 12093 3 Gut 0.75 protein_coding synonymous_variant LOW 483C>T Leu161Leu
M0206125 MFBJLJKI_00021 12164 3 Gut 0.75 protein_coding missense_variant MODERATE 554A>G Asp185Gly
M0206126 MFBJLJKI_00021 12312 3 Gut 0.75 protein_coding synonymous_variant LOW 702G>A Thr234Thr
M0206127 MFBJLJKI_00021 12327 3 Gut 0.75 protein_coding synonymous_variant LOW 717A>C Arg239Arg
M0206128 MFBJLJKI_00021 12328 3 Gut 0.75 protein_coding missense_variant MODERATE 718G>A Gly240Ser
M0206129 MFBJLJKI_00021 12363 3 Gut 0.75 protein_coding synonymous_variant LOW 753A>T Val251Val
M0206130 MFBJLJKI_00021 12558 3 Gut 0.75 protein_coding synonymous_variant LOW 948T>C Asp316Asp
M0206131 MFBJLJKI_00021 12621 3 Gut 0.75 protein_coding synonymous_variant LOW 1011T>C Cys337Cys
M0206132 MFBJLJKI_00021 12780 3 Gut 0.75 protein_coding synonymous_variant LOW 1170G>A Thr390Thr
M0206133 MFBJLJKI_00021 12873 3 Gut 0.75 protein_coding synonymous_variant LOW 1263C>T Thr421Thr
M0206134 MFBJLJKI_00021 12915 3 Gut 0.75 protein_coding synonymous_variant LOW 1305C>T Asp435Asp
M0206135 MFBJLJKI_00021 12984 3 Gut 0.75 protein_coding synonymous_variant LOW 1374C>T Gly458Gly
M0206136 MFBJLJKI_00021 13002 3 Gut 0.75 protein_coding synonymous_variant LOW 1392G>A Gln464Gln
M0206137 MFBJLJKI_00021 13062 3 Gut 0.75 protein_coding synonymous_variant LOW 1452T>C Ala484Ala
M0206138 MFBJLJKI_00021 13137 3 Gut 0.75 protein_coding synonymous_variant LOW 1527T>C Leu509Leu
M0206139 MFBJLJKI_00021 13452 3 Gut 0.75 protein_coding synonymous_variant LOW 1842C>T Pro614Pro
M0206140 MFBJLJKI_00021 13854 3 Gut 0.75 protein_coding synonymous_variant LOW 2244T>C Ala748Ala
M0206141 MFBJLJKI_00021 14151 3 Gut 0.75 protein_coding synonymous_variant LOW 2541C>T Ser847Ser
M0206142 MFBJLJKI_00021 14295 3 Gut 0.75 protein_coding missense_variant MODERATE 2685T>A Asp895Glu
M0206143 MFBJLJKI_00023 15194 3 Gut 0.75 protein_coding missense_variant MODERATE 61A>T Ile21Phe
M0206144 MFBJLJKI_00025 16654 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -95C>T None
M0206145 MFBJLJKI_00025 16823 3 Gut 0.75 protein_coding synonymous_variant LOW 75T>C Asn25Asn
M0206146 MFBJLJKI_00025 16937 3 Gut 0.75 protein_coding synonymous_variant LOW 189A>G Thr63Thr
M0206147 MFBJLJKI_00025 16994 3 Gut 0.75 protein_coding synonymous_variant LOW 246T>C Ser82Ser
M0206148 MFBJLJKI_00025 17034 3 Gut 0.75 protein_coding synonymous_variant LOW 286C>A Arg96Arg
M0206149 MFBJLJKI_00025 17084 3 Gut 0.75 protein_coding synonymous_variant LOW 336C>T Phe112Phe
M0206150 MFBJLJKI_00025 17115 3 Gut 0.75 protein_coding missense_variant MODERATE 367A>G Thr123Ala
M0206151 MFBJLJKI_00025 17139 3 Gut 0.75 protein_coding missense_variant MODERATE 391G>A Ala131Thr
M0206152 MFBJLJKI_00025 17256 3 Gut 0.75 protein_coding missense_variant MODERATE 508A>G Thr170Ala
M0206153 MFBJLJKI_00025 17258 3 Gut 0.75 protein_coding synonymous_variant LOW 510G>A Thr170Thr
M0206154 MFBJLJKI_00025 17390 3 Gut 0.75 protein_coding synonymous_variant LOW 642A>G Ser214Ser
M0206155 MFBJLJKI_00026 17524 3 Gut 0.75 protein_coding missense_variant MODERATE 58A>C Asn20His
M0206156 MFBJLJKI_00026 17574 3 Gut 0.75 protein_coding synonymous_variant LOW 108A>C Ile36Ile
M0206157 MFBJLJKI_00026 17676 3 Gut 0.75 protein_coding synonymous_variant LOW 210C>T Thr70Thr
M0206158 MFBJLJKI_00026 17748 3 Gut 0.75 protein_coding synonymous_variant LOW 282A>G Gln94Gln
M0206159 MFBJLJKI_00026 17774 3 Gut 0.75 protein_coding missense_variant MODERATE 308C>A Ala103Glu
M0206160 MFBJLJKI_00026 17784 3 Gut 0.75 protein_coding synonymous_variant LOW 318C>T Asn106Asn
M0206161 MFBJLJKI_00026 18164 3 Gut 0.75 protein_coding missense_variant MODERATE 698C>A Pro233Gln
M0206162 MFBJLJKI_00026 18254 3 Gut 0.75 protein_coding missense_variant MODERATE 788C>T Ala263Val
M0206163 MFBJLJKI_00026 18323 3 Gut 0.75 protein_coding missense_variant MODERATE 857T>A Leu286Gln
M0206164 MFBJLJKI_00027 18836 3 Gut 0.75 protein_coding synonymous_variant LOW 444T>C Asp148Asp
M0206165 MFBJLJKI_00027 18857 3 Gut 0.75 protein_coding synonymous_variant LOW 465G>A Gln155Gln
M0206166 MFBJLJKI_00027 19259 3 Gut 0.75 protein_coding synonymous_variant LOW 867C>A Pro289Pro
M0206167 MFBJLJKI_00027 19307 3 Gut 0.75 protein_coding synonymous_variant LOW 915T>A Ser305Ser
M0206168 MFBJLJKI_00027 19385 3 Gut 0.75 protein_coding synonymous_variant LOW 993C>G Ala331Ala
M0206169 MFBJLJKI_00027 19400 3 Gut 0.75 protein_coding synonymous_variant LOW 1008A>T Ala336Ala
M0206170 MFBJLJKI_00027 19406 3 Gut 0.75 protein_coding synonymous_variant LOW 1014C>T Asn338Asn
M0206171 MFBJLJKI_00027 19418 3 Gut 0.75 protein_coding synonymous_variant LOW 1026C>T Ser342Ser
M0206172 MFBJLJKI_00029 21938 3 Gut 0.75 protein_coding synonymous_variant LOW 1305A>C Gly435Gly
M0206173 MFBJLJKI_00034 25349 3 Gut 0.75 protein_coding missense_variant MODERATE 410T>C Leu137Ser
M0206174 MFBJLJKI_00035 26751 3 Gut 0.75 protein_coding missense_variant MODERATE 1221G>T Lys407Asn
M0206175 MFBJLJKI_00036 27147 3 Gut 0.75 protein_coding synonymous_variant LOW 351C>T Cys117Cys
M0206176 MFBJLJKI_00036 27358 3 Gut 0.75 protein_coding missense_variant MODERATE 562A>C Lys188Gln
M0206177 MFBJLJKI_00037 27520 3 Gut 0.75 protein_coding synonymous_variant LOW 144A>G Gln48Gln
M0206178 MFBJLJKI_00037 27614 3 Gut 0.75 protein_coding missense_variant MODERATE 238G>T Ala80Ser
M0206179 MFBJLJKI_00037 27743 3 Gut 0.75 protein_coding missense_variant MODERATE 367G>A Ala123Thr
M0206180 MFBJLJKI_00037 27769 3 Gut 0.75 protein_coding synonymous_variant LOW 393A>T Ile131Ile
M0206181 MFBJLJKI_00037 27871 3 Gut 0.75 protein_coding synonymous_variant LOW 495C>T Ala165Ala
M0206182 MFBJLJKI_00037 27886 3 Gut 0.75 protein_coding synonymous_variant LOW 510A>C Gly170Gly
M0206183 MFBJLJKI_00037 27916 3 Gut 0.75 protein_coding synonymous_variant LOW 540T>G Pro180Pro
M0206184 MFBJLJKI_00037 27940 3 Gut 0.75 protein_coding synonymous_variant LOW 564C>T Gly188Gly
M0206185 MFBJLJKI_00037 27967 3 Gut 0.75 protein_coding synonymous_variant LOW 591G>T Thr197Thr
M0206186 MFBJLJKI_00037 27970 3 Gut 0.75 protein_coding synonymous_variant LOW 594C>A Pro198Pro
M0206187 MFBJLJKI_00037 28057 3 Gut 0.75 protein_coding synonymous_variant LOW 681A>T Arg227Arg
M0206188 MFBJLJKI_00037 28111 3 Gut 0.75 protein_coding synonymous_variant LOW 735A>C Thr245Thr
M0206189 MFBJLJKI_00037 28219 3 Gut 0.75 protein_coding synonymous_variant LOW 843G>A Ala281Ala
M0206190 MFBJLJKI_00037 28243 3 Gut 0.75 protein_coding synonymous_variant LOW 867G>A Arg289Arg
M0206191 MFBJLJKI_00037 28291 3 Gut 0.75 protein_coding synonymous_variant LOW 915G>A Thr305Thr
M0206192 MFBJLJKI_00037 28473 3 Gut 0.75 protein_coding missense_variant MODERATE 1097A>C Glu366Ala
M0206193 MFBJLJKI_00037 28495 3 Gut 0.75 protein_coding synonymous_variant LOW 1119T>A Ala373Ala
M0206194 MFBJLJKI_00037 28509 3 Gut 0.75 protein_coding missense_variant MODERATE 1133T>C Val378Ala
M0206195 MFBJLJKI_00037 28675 3 Gut 0.75 protein_coding synonymous_variant LOW 1299A>T Thr433Thr
M0206196 MFBJLJKI_00037 28719 3 Gut 0.75 protein_coding missense_variant MODERATE 1343T>A Val448Glu
M0206197 MFBJLJKI_00037 28777 3 Gut 0.75 protein_coding synonymous_variant LOW 1401T>A Thr467Thr
M0206198 MFBJLJKI_00037 28789 3 Gut 0.75 protein_coding synonymous_variant LOW 1413G>T Leu471Leu
M0206199 MFBJLJKI_00037 28807 3 Gut 0.75 protein_coding synonymous_variant LOW 1431T>C Val477Val
M0206200 MFBJLJKI_00037 28837 3 Gut 0.75 protein_coding synonymous_variant LOW 1461G>A Pro487Pro
M0206201 MFBJLJKI_00037 28843 3 Gut 0.75 protein_coding synonymous_variant LOW 1467C>T Phe489Phe
M0206202 MFBJLJKI_00037 28852 3 Gut 0.75 protein_coding synonymous_variant LOW 1476T>C Ala492Ala
M0206203 MFBJLJKI_00037 28876 3 Gut 0.75 protein_coding synonymous_variant LOW 1500T>C Arg500Arg
M0206204 MFBJLJKI_00037 28897 3 Gut 0.75 protein_coding synonymous_variant LOW 1521T>C Asp507Asp
M0206205 MFBJLJKI_00037 28909 3 Gut 0.75 protein_coding synonymous_variant LOW 1533A>G Lys511Lys
M0206206 MFBJLJKI_00037 28916 3 Gut 0.75 protein_coding synonymous_variant LOW 1540T>C Leu514Leu
M0206207 MFBJLJKI_00037 28921 3 Gut 0.75 protein_coding synonymous_variant LOW 1545G>A Lys515Lys
M0206208 MFBJLJKI_00037 28954 3 Gut 0.75 protein_coding synonymous_variant LOW 1578C>T Gly526Gly
M0206209 MFBJLJKI_00037 28957 3 Gut 0.75 protein_coding synonymous_variant LOW 1581T>C Gly527Gly
M0206210 MFBJLJKI_00037 28972 3 Gut 0.75 protein_coding synonymous_variant LOW 1596G>T Ala532Ala
M0206211 MFBJLJKI_00037 28975 3 Gut 0.75 protein_coding synonymous_variant LOW 1599A>C Thr533Thr
M0206212 MFBJLJKI_00037 28981 3 Gut 0.75 protein_coding synonymous_variant LOW 1605T>A Ala535Ala
M0206213 MFBJLJKI_00037 28996 3 Gut 0.75 protein_coding synonymous_variant LOW 1620G>A Thr540Thr
M0206214 MFBJLJKI_00037 29005 3 Gut 0.75 protein_coding synonymous_variant LOW 1629G>A Lys543Lys
M0206215 MFBJLJKI_00037 29023 3 Gut 0.75 protein_coding synonymous_variant LOW 1647C>G Leu549Leu
M0206216 MFBJLJKI_00037 29044 3 Gut 0.75 protein_coding synonymous_variant LOW 1668G>T Pro556Pro
M0206217 MFBJLJKI_00037 29058 3 Gut 0.75 protein_coding missense_variant MODERATE 1682G>A Cys561Tyr
M0206218 MFBJLJKI_00037 29080 3 Gut 0.75 protein_coding synonymous_variant LOW 1704A>T Pro568Pro
M0206219 MFBJLJKI_00037 29125 3 Gut 0.75 protein_coding synonymous_variant LOW 1749A>G Lys583Lys
M0206220 MFBJLJKI_00037 29129 3 Gut 0.75 protein_coding missense_variant MODERATE 1753T>A Ser585Thr
M0206221 MFBJLJKI_00037 29131 3 Gut 0.75 protein_coding synonymous_variant LOW 1755T>A Ser585Ser
M0206222 MFBJLJKI_00037 29162 3 Gut 0.75 protein_coding missense_variant MODERATE 1786C>G Gln596Glu
M0206223 MFBJLJKI_00037 29177 3 Gut 0.75 protein_coding synonymous_variant LOW 1801T>C Leu601Leu
M0206224 MFBJLJKI_00037 29215 3 Gut 0.75 protein_coding missense_variant MODERATE 1839G>C Glu613Asp
M0206225 MFBJLJKI_00037 29296 3 Gut 0.75 protein_coding synonymous_variant LOW 1920G>A Lys640Lys
M0206226 MFBJLJKI_00037 29311 3 Gut 0.75 protein_coding synonymous_variant LOW 1935G>A Arg645Arg
M0206227 MFBJLJKI_00037 29364 3 Gut 0.75 protein_coding missense_variant MODERATE 1988C>T Ser663Phe
M0206228 MFBJLJKI_00037 29379 3 Gut 0.75 protein_coding missense_variant MODERATE 2003T>C Ile668Thr
M0206229 MFBJLJKI_00037 29386 3 Gut 0.75 protein_coding synonymous_variant LOW 2010A>G Ala670Ala
M0206230 MFBJLJKI_00037 29392 3 Gut 0.75 protein_coding synonymous_variant LOW 2016C>A Ala672Ala
M0206231 MFBJLJKI_00037 29449 3 Gut 0.75 protein_coding synonymous_variant LOW 2073T>C Ser691Ser
M0206232 MFBJLJKI_00037 29476 3 Gut 0.75 protein_coding synonymous_variant LOW 2100C>T Val700Val
M0206233 MFBJLJKI_00037 29514 3 Gut 0.75 protein_coding missense_variant MODERATE 2138C>T Ala713Val
M0206234 MFBJLJKI_00038 29616 3 Gut 0.75 protein_coding synonymous_variant LOW 90G>A Lys30Lys
M0206235 MFBJLJKI_00038 29658 3 Gut 0.75 protein_coding synonymous_variant LOW 132C>T Asp44Asp
M0206236 MFBJLJKI_00038 29679 3 Gut 0.75 protein_coding synonymous_variant LOW 153T>G Val51Val
M0206237 MFBJLJKI_00038 29691 3 Gut 0.75 protein_coding synonymous_variant LOW 165T>G Leu55Leu
M0206238 MFBJLJKI_00038 29709 3 Gut 0.75 protein_coding synonymous_variant LOW 183T>C Ser61Ser
M0206239 MFBJLJKI_00039 29835 3 Gut 0.75 protein_coding synonymous_variant LOW 87G>A Glu29Glu
M0206240 MFBJLJKI_00039 29836 3 Gut 0.75 protein_coding missense_variant MODERATE 88A>G Ile30Val
M0206241 MFBJLJKI_00043 30597 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3159C>T None
M0206242 MFBJLJKI_00043 30622 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3134T>G None
M0206243 MFBJLJKI_00043 30629 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3127G>A None
M0206244 MFBJLJKI_00043 30640 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3116T>C None
M0206245 MFBJLJKI_00043 30676 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -3080T>C None
M0206246 MFBJLJKI_00041 30703 3 Gut 0.75 protein_coding synonymous_variant LOW 1323A>G Glu441Glu
M0206247 MFBJLJKI_00041 30795 3 Gut 0.75 protein_coding missense_variant MODERATE 1231T>C Tyr411His
M0206248 MFBJLJKI_00041 30928 3 Gut 0.75 protein_coding synonymous_variant LOW 1098A>G Leu366Leu
M0206249 MFBJLJKI_00041 30930 3 Gut 0.75 protein_coding missense_variant MODERATE 1096C>A Leu366Ile
M0206250 MFBJLJKI_00041 31030 3 Gut 0.75 protein_coding synonymous_variant LOW 996G>A Gln332Gln
M0206251 MFBJLJKI_00041 31084 3 Gut 0.75 protein_coding synonymous_variant LOW 942A>C Thr314Thr
M0206252 MFBJLJKI_00041 31106 3 Gut 0.75 protein_coding missense_variant MODERATE 920T>C Ile307Thr
M0206253 MFBJLJKI_00041 31168 3 Gut 0.75 protein_coding synonymous_variant LOW 858T>C His286His
M0206254 MFBJLJKI_00041 31216 3 Gut 0.75 protein_coding synonymous_variant LOW 810G>A Leu270Leu
M0206255 MFBJLJKI_00041 31366 3 Gut 0.75 protein_coding synonymous_variant LOW 660C>T His220His
M0206256 MFBJLJKI_00041 31416 3 Gut 0.75 protein_coding missense_variant MODERATE 610A>G Ile204Val
M0206257 MFBJLJKI_00041 31432 3 Gut 0.75 protein_coding synonymous_variant LOW 594A>C Ser198Ser
M0206258 MFBJLJKI_00041 31447 3 Gut 0.75 protein_coding synonymous_variant LOW 579A>T Pro193Pro
M0206259 MFBJLJKI_00041 31450 3 Gut 0.75 protein_coding synonymous_variant LOW 576T>C Tyr192Tyr
M0206260 MFBJLJKI_00041 31456 3 Gut 0.75 protein_coding synonymous_variant LOW 570A>G Glu190Glu
M0206261 MFBJLJKI_00041 31481 3 Gut 0.75 protein_coding missense_variant MODERATE 545C>T Thr182Ile
M0206262 MFBJLJKI_00041 31489 3 Gut 0.75 protein_coding missense_variant MODERATE 537T>G Asp179Glu
M0206263 MFBJLJKI_00041 31538 3 Gut 0.75 protein_coding missense_variant MODERATE 488A>G Asp163Gly
M0206264 MFBJLJKI_00042 32140 3 Gut 0.75 protein_coding missense_variant MODERATE 881A>T Asn294Ile
M0206265 MFBJLJKI_00041 33057 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -1032A>C None
M0206266 MFBJLJKI_00041 33563 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -1538T>C None
M0206267 MFBJLJKI_00041 34859 3 Gut 0.75 protein_coding upstream_gene_variant MODIFIER -2834G>A None
M0206268 MFBJLJKI_00045 35324 3 Gut 0.75 protein_coding synonymous_variant LOW 249C>T Leu83Leu
M0206269 MFBJLJKI_00045 35498 3 Gut 0.75 protein_coding synonymous_variant LOW 423G>T Val141Val
M0206270 MFBJLJKI_00045 35736 3 Gut 0.75 protein_coding stop_lost&splice_region_variant HIGH 661T>C Ter221Glnext*?






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
MFBJLJKI_00065 Arsenic (As), Menadione [class: Naphthoquinone] 70.8 1.1e-62 34 194 0.8299 0.7816 experiment
MFBJLJKI_00065 Arsenic (As) 75.5 9.2e-74 6 194 0.9897 0.7680 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
MFBJLJKI_00054 ARO:3000412 100 1.64e-185 18 288 0.9410 1.0000 sulfonamide antibiotic sulfonamide resistant sul antibiotic target replacement
MFBJLJKI_00055 ARO:3002639 99.6 5.98e-202 1 267 1.0000 1.0000 aminoglycoside antibiotic APH(3'') antibiotic inactivation
MFBJLJKI_00056 ARO:3002660 99.3 1.07e-205 1 278 1.0000 1.0000 aminoglycoside antibiotic APH(6) antibiotic inactivation
MFBJLJKI_00059 ARO:3002705 99.3 1.88e-274 1 404 1.0000 1.0000 phenicol antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
MFBJLJKI_00068 ARO:3000873 100 5.12e-208 1 286 1.0000 1.0000 monobactam TEM beta-lactamase antibiotic inactivation






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
MFBJLJKI_00019 AEA95649.1|GH23 100 1.85e-153 1 215 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
MFBJLJKI_00059 2.A.1.2.110 98.3 1e-213 1 404 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)