Cluster Information | Plasmid Cluster ID | C1316 |
Reference Plasmid | NZ_CP155542.1 | |
Reference Plasmid Size | 32420 | |
Reference Plasmid GC Content | 0.30 | |
Reference Plasmid Mobility Type | non-mobilizable |
mutid | gname | pos | count | tissue | frequnt | biotype | consequence | impact | nucchange | aachange |
---|---|---|---|---|---|---|---|---|---|---|
M0115960 | PDPMKEMA_00001 | 424 | 7 | Skin | 0.08 | protein_coding | missense_variant | MODERATE | 421A>C | Thr141Pro |
M0115961 | PDPMKEMA_00002 | 503 | 6 | Skin | 0.07 | protein_coding | upstream_gene_variant | MODIFIER | -349T>A | None |
M0115962 | PDPMKEMA_00002 | 504 | 6 | Skin | 0.07 | protein_coding | upstream_gene_variant | MODIFIER | -348T>A | None |
M0115963 | PDPMKEMA_00002 | 1274 | 8 | Skin | 0.09 | protein_coding | synonymous_variant | LOW | 423T>C | Arg141Arg |
M0115964 | PDPMKEMA_00005 | 3757 | 10 | Skin | 0.11 | protein_coding | synonymous_variant | LOW | 1185A>G | Ala395Ala |
M0115965 | PDPMKEMA_00008 | 6383 | 9 | Skin | 0.10 | protein_coding | missense_variant | MODERATE | 268G>A | Gly90Ser |
M0115966 | PDPMKEMA_00003 | 6674 | 10 | Skin | 0.11 | protein_coding | upstream_gene_variant | MODIFIER | -4536T>A | None |
M0115967 | PDPMKEMA_00003 | 6675 | 10 | Skin | 0.11 | protein_coding | upstream_gene_variant | MODIFIER | -4537T>A | None |
M0115968 | PDPMKEMA_00034 | 32331 | 7 | Skin | 0.08 | protein_coding | missense_variant | MODERATE | 724C>G | Gln242Glu |
M0115969 | PDPMKEMA_00032 | 30160 | 3 | Skin | 0.03 | protein_coding | missense_variant | MODERATE | 277C>A | Leu93Ile |
M0115970 | PDPMKEMA_00020 | 16893 | 4 | Skin | 0.04 | protein_coding | missense_variant | MODERATE | 1139T>C | Met380Thr |
M0115971 | PDPMKEMA_00003 | 2219 | 9 | Skin | 0.10 | protein_coding | upstream_gene_variant | MODIFIER | -81C>T | None |
M0115972 | PDPMKEMA_00003 | 2220 | 11 | Skin | 0.12 | protein_coding | upstream_gene_variant | MODIFIER | -82T>G | None |
M0115973 | PDPMKEMA_00003 | 2222 | 9 | Skin | 0.10 | protein_coding | upstream_gene_variant | MODIFIER | -84C>T | None |
M0115974 | PDPMKEMA_00005 | 4225 | 3 | Skin | 0.03 | protein_coding | synonymous_variant | LOW | 1653C>T | Asp551Asp |
M0115975 | PDPMKEMA_00023 | 19457 | 3 | Skin | 0.03 | protein_coding | synonymous_variant | LOW | 132C>T | Pro44Pro |
M0115976 | PDPMKEMA_00001 | 306 | 3 | Skin | 0.03 | protein_coding | synonymous_variant | LOW | 303T>C | Asp101Asp |
M0115977 | PDPMKEMA_00032 | 30356 | 3 | Skin | 0.03 | protein_coding | synonymous_variant | LOW | 81C>T | Tyr27Tyr |
M0115978 | PDPMKEMA_00032 | 30366 | 3 | Skin | 0.03 | protein_coding | missense_variant | MODERATE | 71G>A | Gly24Asp |
M0115979 | PDPMKEMA_00009 | 8563 | 5 | Skin | 0.06 | protein_coding | upstream_gene_variant | MODIFIER | -50C>G | None |
M0115980 | PDPMKEMA_00012 | 10925 | 6 | Skin | 0.07 | protein_coding | synonymous_variant | LOW | 318G>A | Glu106Glu |
M0115981 | PDPMKEMA_00012 | 10991 | 7 | Skin | 0.08 | protein_coding | missense_variant | MODERATE | 252T>G | Asp84Glu |
M0115982 | PDPMKEMA_00012 | 11102 | 8 | Skin | 0.09 | protein_coding | synonymous_variant | LOW | 141C>T | Ile47Ile |
M0115983 | PDPMKEMA_00009 | 11245 | 5 | Skin | 0.06 | protein_coding | upstream_gene_variant | MODIFIER | -2732T>C | None |
M0115984 | PDPMKEMA_00009 | 11254 | 7 | Skin | 0.08 | protein_coding | upstream_gene_variant | MODIFIER | -2741T>G | None |
M0115985 | PDPMKEMA_00013 | 11303 | 3 | Skin | 0.03 | protein_coding | synonymous_variant | LOW | 576T>A | Ile192Ile |
M0115986 | PDPMKEMA_00013 | 11354 | 3 | Skin | 0.03 | protein_coding | synonymous_variant | LOW | 525T>C | Ser175Ser |
M0115987 | PDPMKEMA_00013 | 11504 | 8 | Skin | 0.09 | protein_coding | synonymous_variant | LOW | 375C>T | Ile125Ile |
M0115988 | PDPMKEMA_00013 | 11531 | 7 | Skin | 0.08 | protein_coding | synonymous_variant | LOW | 348A>G | Thr116Thr |
M0115989 | PDPMKEMA_00020 | 17577 | 5 | Skin | 0.06 | protein_coding | missense_variant | MODERATE | 455C>T | Ala152Val |
M0115990 | PDPMKEMA_00013 | 11464 | 3 | Skin | 0.03 | protein_coding | missense_variant | MODERATE | 415A>G | Asn139Asp |
M0115991 | PDPMKEMA_00013 | 11627 | 4 | Skin | 0.04 | protein_coding | synonymous_variant | LOW | 252A>G | Val84Val |
M0115992 | PDPMKEMA_00013 | 11734 | 3 | Skin | 0.03 | protein_coding | missense_variant | MODERATE | 145G>A | Ala49Thr |
M0115993 | PDPMKEMA_00013 | 11741 | 4 | Skin | 0.04 | protein_coding | synonymous_variant | LOW | 138T>A | Gly46Gly |
M0115994 | PDPMKEMA_00013 | 11777 | 3 | Skin | 0.03 | protein_coding | synonymous_variant | LOW | 102A>G | Lys34Lys |
M0115995 | PDPMKEMA_00013 | 11780 | 4 | Skin | 0.04 | protein_coding | synonymous_variant | LOW | 99G>A | Arg33Arg |
M0115996 | PDPMKEMA_00013 | 11781 | 3 | Skin | 0.03 | protein_coding | missense_variant | MODERATE | 98G>A | Arg33Lys |
M0115997 | PDPMKEMA_00013 | 11793 | 3 | Skin | 0.03 | protein_coding | missense_variant | MODERATE | 86G>A | Arg29Lys |
M0115998 | PDPMKEMA_00013 | 11810 | 3 | Skin | 0.03 | protein_coding | synonymous_variant | LOW | 69A>G | Leu23Leu |
M0115999 | PDPMKEMA_00013 | 11816 | 4 | Skin | 0.04 | protein_coding | synonymous_variant | LOW | 63A>G | Val21Val |
M0116000 | PDPMKEMA_00013 | 11846 | 3 | Skin | 0.03 | protein_coding | synonymous_variant | LOW | 33T>G | Leu11Leu |
M0116001 | PDPMKEMA_00009 | 11910 | 3 | Skin | 0.03 | protein_coding | upstream_gene_variant | MODIFIER | -3397C>T | None |
M0116002 | PDPMKEMA_00009 | 11915 | 3 | Skin | 0.03 | protein_coding | upstream_gene_variant | MODIFIER | -3402T>C | None |
M0116003 | PDPMKEMA_00015 | 18081 | 6 | Skin | 0.07 | protein_coding | upstream_gene_variant | MODIFIER | -4979C>T | None |
Gene Name | vf_gene_id | vf_name | identity | evalue | qstart | qend | query_coverage | subject_coverage | vf_category | gene_description | condition |
---|
Gene Name | compound | identity | evalue | qstart | qend | query_coverage | subject_coverage | group |
---|---|---|---|---|---|---|---|---|
PDPMKEMA_00013 | Cadmium (Cd), Zinc (Zn) | 94.1 | 1.7e-101 | 1 | 205 | 1.0000 | 1.0000 | experiment |
PDPMKEMA_00020 | Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Chlorhexidine [class: Biguanides], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Crystal Violet [class: Triarylmethane], Pyronin Y [class: Xanthene], Quinaldine red [class: Quinolines], Rhodamine 6G [class: Xanthene], Safranin O [class: Azin], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Alexidine [class: Biguanides], Amicarbalide [class: Diamidine], Pentamidine [class: Diamidine], Hexamidine [class: Diamidine], Propamidine [class: Diamidine], Diamidinodiphenylamine [class: Diamidine], Dibrompropamidine [class: Diamidine], 1a-62/JC-1-127 [class: Guanylhydrazones], 1i-39/JC-1-134 [class: Guanylhydrazones], Stilbamidine [class: Diamidine], Phenamidine [class: Diamidine], Diminazene [class: Diamidine] | 100 | 3.2e-274 | 1 | 514 | 1.0000 | 1.0000 | experiment |
PDPMKEMA_00021 | Chlorhexidine [class: Biguanides], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Pentamidine [class: Diamidine], Propamidine [class: Diamidine], Diaminodiphenylamine [class: Diamidine] | 99.5 | 4.7e-106 | 1 | 188 | 1.0000 | 1.0000 | experiment |
CELKIDOE_00013 | Cadmium (Cd), Zinc (Zn) | 94.1 | 1.7e-101 | 1 | 205 | 1.0000 | 1.0000 | experiment |
CELKIDOE_00020 | Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Chlorhexidine [class: Biguanides], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Crystal Violet [class: Triarylmethane], Pyronin Y [class: Xanthene], Quinaldine red [class: Quinolines], Rhodamine 6G [class: Xanthene], Safranin O [class: Azin], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Alexidine [class: Biguanides], Amicarbalide [class: Diamidine], Pentamidine [class: Diamidine], Hexamidine [class: Diamidine], Propamidine [class: Diamidine], Diamidinodiphenylamine [class: Diamidine], Dibrompropamidine [class: Diamidine], 1a-62/JC-1-127 [class: Guanylhydrazones], 1i-39/JC-1-134 [class: Guanylhydrazones], Stilbamidine [class: Diamidine], Phenamidine [class: Diamidine], Diminazene [class: Diamidine] | 100 | 3.2e-274 | 1 | 514 | 1.0000 | 1.0000 | experiment |
CELKIDOE_00021 | Chlorhexidine [class: Biguanides], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Pentamidine [class: Diamidine], Propamidine [class: Diamidine], Diaminodiphenylamine [class: Diamidine] | 99.5 | 4.7e-106 | 1 | 188 | 1.0000 | 1.0000 | experiment |
PDPMKEMA_00005 | Copper (Cu), Silver (Ag) | 75.6 | 0 | 1 | 795 | 1.0000 | 1.0013 | prediction |
PDPMKEMA_00006 | Copper (Cu) | 100 | 1.6e-33 | 1 | 69 | 1.0000 | 1.0000 | prediction |
PDPMKEMA_00013 | Cadmium (Cd), Zinc (Zn) | 100 | 1.3e-102 | 1 | 205 | 1.0000 | 1.0000 | prediction |
PDPMKEMA_00020 | Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Chlorhexidine [class: Biguanides], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Crystal Violet [class: Triarylmethane], Pyronin Y [class: Xanthene], Quinaldine red [class: Quinolines], Rhodamine 6G [class: Xanthene], Safranin O [class: Azin], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Alexidine [class: Biguanides], Amicarbalide [class: Diamidine], Pentamidine [class: Diamidine], Hexamidine [class: Diamidine], Propamidine [class: Diamidine], Diamidinodiphenylamine [class: Diamidine], Dibrompropamidine [class: Diamidine], 1a-62/JC-1-127 [class: Guanylhydrazones], 1i-39/JC-1-134 [class: Guanylhydrazones], Stilbamidine [class: Diamidine], Phenamidine [class: Diamidine], Diminazene [class: Diamidine] | 100 | 7.4e-272 | 1 | 514 | 1.0000 | 1.0000 | prediction |
PDPMKEMA_00021 | Chlorhexidine [class: Biguanides], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Pentamidine [class: Diamidine], Propamidine [class: Diamidine], Diaminodiphenylamine [class: Diamidine] | 100 | 5.7e-105 | 1 | 188 | 1.0000 | 0.9947 | prediction |
CELKIDOE_00005 | Copper (Cu), Silver (Ag) | 75.6 | 0 | 1 | 795 | 1.0000 | 1.0013 | prediction |
CELKIDOE_00006 | Copper (Cu) | 100 | 1.6e-33 | 1 | 69 | 1.0000 | 1.0000 | prediction |
CELKIDOE_00013 | Cadmium (Cd), Zinc (Zn) | 100 | 1.3e-102 | 1 | 205 | 1.0000 | 1.0000 | prediction |
CELKIDOE_00020 | Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Chlorhexidine [class: Biguanides], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Crystal Violet [class: Triarylmethane], Pyronin Y [class: Xanthene], Quinaldine red [class: Quinolines], Rhodamine 6G [class: Xanthene], Safranin O [class: Azin], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Alexidine [class: Biguanides], Amicarbalide [class: Diamidine], Pentamidine [class: Diamidine], Hexamidine [class: Diamidine], Propamidine [class: Diamidine], Diamidinodiphenylamine [class: Diamidine], Dibrompropamidine [class: Diamidine], 1a-62/JC-1-127 [class: Guanylhydrazones], 1i-39/JC-1-134 [class: Guanylhydrazones], Stilbamidine [class: Diamidine], Phenamidine [class: Diamidine], Diminazene [class: Diamidine] | 100 | 7.4e-272 | 1 | 514 | 1.0000 | 1.0000 | prediction |
CELKIDOE_00021 | Chlorhexidine [class: Biguanides], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Pentamidine [class: Diamidine], Propamidine [class: Diamidine], Diaminodiphenylamine [class: Diamidine] | 100 | 5.7e-105 | 1 | 188 | 1.0000 | 0.9947 | prediction |
Gene Name | aro_accession | identity | evalue | qstart | qend | query_coverage | subject_coverage | drug_class | amr_gene_family | resistance_mechanism |
---|---|---|---|---|---|---|---|---|---|---|
PDPMKEMA_00020 | ARO:3003046 | 99.8 | 0 | 1 | 514 | 1.0000 | 1.0000 | fluoroquinolone antibiotic | major facilitator superfamily (MFS) antibiotic efflux pump | antibiotic efflux |
PDPMKEMA_00025 | ARO:3003111 | 99.6 | 0 | 1 | 492 | 1.0000 | 1.0000 | lincosamide antibiotic | lsa-type ABC-F protein | antibiotic target protection |
PDPMKEMA_00026 | ARO:3003441 | 100 | 1.68e-256 | 1 | 349 | 1.0000 | 1.0000 | lincosamide antibiotic | Cfr 23S ribosomal RNA methyltransferase | antibiotic target alteration |
PDPMKEMA_00031 | ARO:3000319 | 98.7 | 1.82e-228 | 1 | 299 | 1.0000 | 1.0000 | macrolide antibiotic | macrolide phosphotransferase (MPH) | antibiotic inactivation |
PDPMKEMA_00032 | ARO:3000251 | 95.7 | 2.0997789948253e-320 | 1 | 488 | 1.0000 | 1.0000 | macrolide antibiotic | msr-type ABC-F protein | antibiotic target protection |
CELKIDOE_00020 | ARO:3003046 | 99.8 | 0 | 1 | 514 | 1.0000 | 1.0000 | fluoroquinolone antibiotic | major facilitator superfamily (MFS) antibiotic efflux pump | antibiotic efflux |
CELKIDOE_00025 | ARO:3003111 | 99.6 | 0 | 1 | 492 | 1.0000 | 1.0000 | lincosamide antibiotic | lsa-type ABC-F protein | antibiotic target protection |
CELKIDOE_00026 | ARO:3003441 | 100 | 1.68e-256 | 1 | 349 | 1.0000 | 1.0000 | lincosamide antibiotic | Cfr 23S ribosomal RNA methyltransferase | antibiotic target alteration |
CELKIDOE_00031 | ARO:3000319 | 98.7 | 1.82e-228 | 1 | 299 | 1.0000 | 1.0000 | macrolide antibiotic | macrolide phosphotransferase (MPH) | antibiotic inactivation |
CELKIDOE_00032 | ARO:3000251 | 95.7 | 2.0997789948253e-320 | 1 | 488 | 1.0000 | 1.0000 | macrolide antibiotic | msr-type ABC-F protein | antibiotic target protection |
Gene Name | phi_molconn_id | host gene_name | identity | evalue | qstart | qend | query_coverage | subject_coverage | host_descripton | disease_name | function | phenotype_of_mutant |
---|
Gene Name | cazy_id | identity | evalue | qstart | qend | query_coverage | subject_coverage |
---|
Gene Name | tcid | identity | evalue | qstart | qend | query_coverage | subject_coverage | class_field | class_term | subclass | subclass_term | family | family_term |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PDPMKEMA_00005 | 3.A.3.5.19 | 73.6 | 0 | 4 | 795 | 0.9962 | 0.9888 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.3 | The P-type ATPase (P-ATPase) Superfamily |
PDPMKEMA_00013 | 2.A.77.1.1 | 93.7 | 1.4e-99 | 1 | 205 | 1.0000 | 0.9809 | 2 | Electrochemical Potential-driven Transporters | 2.A | Porters (uniporters, symporters, antiporters) | 2.A.77 | The Cadmium Resistance (CadD) Family |
PDPMKEMA_00020 | 2.A.1.3.4 | 100 | 1.2e-272 | 1 | 514 | 1.0000 | 1.0000 | 2 | Electrochemical Potential-driven Transporters | 2.A | Porters (uniporters, symporters, antiporters) | 2.A.1 | The Major Facilitator Superfamily (MFS) |
PDPMKEMA_00032 | 3.A.1.121.1 | 98.8 | 5.7e-272 | 1 | 488 | 1.0000 | 1.0000 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.1 | The ATP-binding Cassette (ABC) Superfamily |
CELKIDOE_00005 | 3.A.3.5.19 | 73.6 | 0 | 4 | 795 | 0.9962 | 0.9888 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.3 | The P-type ATPase (P-ATPase) Superfamily |
CELKIDOE_00013 | 2.A.77.1.1 | 93.7 | 1.4e-99 | 1 | 205 | 1.0000 | 0.9809 | 2 | Electrochemical Potential-driven Transporters | 2.A | Porters (uniporters, symporters, antiporters) | 2.A.77 | The Cadmium Resistance (CadD) Family |
CELKIDOE_00020 | 2.A.1.3.4 | 100 | 1.2e-272 | 1 | 514 | 1.0000 | 1.0000 | 2 | Electrochemical Potential-driven Transporters | 2.A | Porters (uniporters, symporters, antiporters) | 2.A.1 | The Major Facilitator Superfamily (MFS) |
CELKIDOE_00032 | 3.A.1.121.1 | 98.8 | 5.7e-272 | 1 | 488 | 1.0000 | 1.0000 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.1 | The ATP-binding Cassette (ABC) Superfamily |