Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1317
  Reference Plasmid   NZ_CP157013.1
  Reference Plasmid Size   251911
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0116004 CEEHGFCD_00013 13557 4 Skin 0.05 protein_coding synonymous_variant LOW 213A>T Leu71Leu
M0116005 CEEHGFCD_00014 14875 3 Skin 0.03 protein_coding synonymous_variant LOW 222G>C Val74Val
M0116006 CEEHGFCD_00014 14878 3 Skin 0.03 protein_coding synonymous_variant LOW 225A>G Gln75Gln
M0116007 CEEHGFCD_00014 14899 3 Skin 0.03 protein_coding synonymous_variant LOW 246C>T Phe82Phe
M0116008 CEEHGFCD_00014 14907 3 Skin 0.03 protein_coding missense_variant MODERATE 254A>T Gln85Leu
M0116009 CEEHGFCD_00014 14929 3 Skin 0.03 protein_coding synonymous_variant LOW 276T>C Gly92Gly
M0116010 CEEHGFCD_00014 14977 3 Skin 0.03 protein_coding synonymous_variant LOW 324T>G Arg108Arg
M0116011 CEEHGFCD_00014 14989 3 Skin 0.03 protein_coding synonymous_variant LOW 336G>C Gly112Gly
M0116012 CEEHGFCD_00014 14992 3 Skin 0.03 protein_coding synonymous_variant LOW 339C>T Phe113Phe
M0116013 CEEHGFCD_00014 14995 3 Skin 0.03 protein_coding synonymous_variant LOW 342G>C Gly114Gly
M0116014 CEEHGFCD_00014 15004 3 Skin 0.03 protein_coding synonymous_variant LOW 351C>G Ala117Ala
M0116015 CEEHGFCD_00014 15040 3 Skin 0.03 protein_coding synonymous_variant LOW 387A>G Gln129Gln
M0116016 CEEHGFCD_00014 15061 3 Skin 0.03 protein_coding synonymous_variant LOW 408G>C Gly136Gly
M0116017 CEEHGFCD_00014 15067 3 Skin 0.03 protein_coding synonymous_variant LOW 414C>T Asp138Asp
M0116018 CEEHGFCD_00014 15100 3 Skin 0.03 protein_coding synonymous_variant LOW 447G>C Pro149Pro
M0116019 CEEHGFCD_00014 15110 3 Skin 0.03 protein_coding synonymous_variant LOW 457T>C Leu153Leu
M0116020 CEEHGFCD_00014 15130 3 Skin 0.03 protein_coding synonymous_variant LOW 477G>C Ala159Ala
M0116021 CEEHGFCD_00014 15160 3 Skin 0.03 protein_coding synonymous_variant LOW 507T>C Phe169Phe
M0116022 CEEHGFCD_00014 15187 3 Skin 0.03 protein_coding synonymous_variant LOW 534C>G Pro178Pro
M0116023 CEEHGFCD_00014 15190 3 Skin 0.03 protein_coding synonymous_variant LOW 537C>G Val179Val
M0116024 CEEHGFCD_00014 15202 3 Skin 0.03 protein_coding synonymous_variant LOW 549G>C Thr183Thr
M0116025 CEEHGFCD_00014 15205 3 Skin 0.03 protein_coding synonymous_variant LOW 552T>C Ala184Ala
M0116026 CEEHGFCD_00014 15208 3 Skin 0.03 protein_coding synonymous_variant LOW 555C>G Ala185Ala
M0116027 CEEHGFCD_00014 15214 3 Skin 0.03 protein_coding synonymous_variant LOW 561A>C Val187Val
M0116028 CEEHGFCD_00015 15570 3 Skin 0.03 protein_coding synonymous_variant LOW 18T>C Ile6Ile
M0116029 CEEHGFCD_00015 15819 3 Skin 0.03 protein_coding synonymous_variant LOW 267G>C Pro89Pro
M0116030 CEEHGFCD_00016 16562 3 Skin 0.03 protein_coding synonymous_variant LOW 210A>G Ala70Ala
M0116031 CEEHGFCD_00017 18942 3 Skin 0.03 protein_coding synonymous_variant LOW 150T>C Pro50Pro
M0116032 CEEHGFCD_00017 18945 3 Skin 0.03 protein_coding synonymous_variant LOW 153C>G Leu51Leu
M0116033 CEEHGFCD_00017 18963 3 Skin 0.03 protein_coding synonymous_variant LOW 171C>T His57His
M0116034 CEEHGFCD_00008 8830 3 Skin 0.03 protein_coding synonymous_variant LOW 795A>G Glu265Glu
M0116035 CEEHGFCD_00008 8879 3 Skin 0.03 protein_coding missense_variant MODERATE 746A>C Asp249Ala
M0116036 CEEHGFCD_00008 8914 3 Skin 0.03 protein_coding synonymous_variant LOW 711G>C Thr237Thr
M0116037 CEEHGFCD_00008 9166 3 Skin 0.03 protein_coding synonymous_variant LOW 459T>C Arg153Arg
M0116038 CEEHGFCD_00008 9271 3 Skin 0.03 protein_coding synonymous_variant LOW 354T>C Ala118Ala
M0116039 CEEHGFCD_00008 9379 3 Skin 0.03 protein_coding synonymous_variant LOW 246G>C Thr82Thr
M0116040 CEEHGFCD_00009 9872 3 Skin 0.03 protein_coding synonymous_variant LOW 483C>G Val161Val
M0116041 CEEHGFCD_00009 10082 3 Skin 0.03 protein_coding synonymous_variant LOW 273T>C Asp91Asp
M0116042 CEEHGFCD_00009 10220 3 Skin 0.03 protein_coding synonymous_variant LOW 135T>C Val45Val
M0116043 CEEHGFCD_00009 10238 3 Skin 0.03 protein_coding synonymous_variant LOW 117T>C Asp39Asp
M0116044 CEEHGFCD_00104 117046 3 Skin 0.03 protein_coding synonymous_variant LOW 345A>G Ala115Ala
M0116045 CEEHGFCD_00029 34114 3 Skin 0.03 protein_coding synonymous_variant LOW 540T>C Phe180Phe
M0116046 CEEHGFCD_00029 34117 3 Skin 0.03 protein_coding synonymous_variant LOW 543G>C Arg181Arg
M0116047 CEEHGFCD_00029 34130 3 Skin 0.03 protein_coding synonymous_variant LOW 556T>C Leu186Leu
M0116048 CEEHGFCD_00128 144638 3 Skin 0.03 protein_coding synonymous_variant LOW 636T>C Val212Val
M0116049 CEEHGFCD_00128 144767 3 Skin 0.03 protein_coding synonymous_variant LOW 765C>G Arg255Arg
M0116050 CEEHGFCD_00128 144915 3 Skin 0.03 protein_coding synonymous_variant LOW 913T>C Leu305Leu
M0116051 CEEHGFCD_00129 145460 3 Skin 0.03 protein_coding missense_variant MODERATE 358T>A Ser120Thr
M0116052 CEEHGFCD_00129 145513 3 Skin 0.03 protein_coding synonymous_variant LOW 411C>T Arg137Arg
M0116053 CEEHGFCD_00129 145615 3 Skin 0.03 protein_coding synonymous_variant LOW 513A>G Glu171Glu
M0116054 CEEHGFCD_00129 145759 3 Skin 0.03 protein_coding synonymous_variant LOW 657T>C Asn219Asn
M0116055 CEEHGFCD_00129 145837 3 Skin 0.03 protein_coding synonymous_variant LOW 735A>G Gln245Gln
M0116056 CEEHGFCD_00130 145911 3 Skin 0.03 protein_coding synonymous_variant LOW 33T>C Gly11Gly
M0116057 CEEHGFCD_00130 145992 3 Skin 0.03 protein_coding synonymous_variant LOW 114A>G Leu38Leu
M0116058 CEEHGFCD_00130 146315 3 Skin 0.03 protein_coding missense_variant MODERATE 437C>T Ala146Val
M0116059 CEEHGFCD_00130 146327 3 Skin 0.03 protein_coding missense_variant MODERATE 449T>C Leu150Pro
M0116060 CEEHGFCD_00130 146343 3 Skin 0.03 protein_coding synonymous_variant LOW 465T>C Gly155Gly
M0116061 CEEHGFCD_00130 146449 3 Skin 0.03 protein_coding missense_variant MODERATE 571A>G Ile191Val
M0116062 CEEHGFCD_00130 146478 3 Skin 0.03 protein_coding synonymous_variant LOW 600A>G Pro200Pro
M0116063 CEEHGFCD_00130 146526 3 Skin 0.03 protein_coding synonymous_variant LOW 648C>A Pro216Pro
M0116064 CEEHGFCD_00130 146529 3 Skin 0.03 protein_coding synonymous_variant LOW 651G>C Ser217Ser
M0116065 CEEHGFCD_00130 146664 3 Skin 0.03 protein_coding synonymous_variant LOW 786T>C His262His
M0116066 CEEHGFCD_00130 146667 3 Skin 0.03 protein_coding synonymous_variant LOW 789G>A Gly263Gly
M0116067 CEEHGFCD_00130 146691 3 Skin 0.03 protein_coding synonymous_variant LOW 813T>C Asp271Asp
M0116068 CEEHGFCD_00096 109347 3 Skin 0.03 protein_coding synonymous_variant LOW 567C>G Arg189Arg
M0116069 CEEHGFCD_00096 109452 3 Skin 0.03 protein_coding synonymous_variant LOW 672T>G Leu224Leu
M0116070 CEEHGFCD_00184 213346 3 Skin 0.03 protein_coding synonymous_variant LOW 120A>G Pro40Pro
M0116071 CEEHGFCD_00184 213406 3 Skin 0.03 protein_coding synonymous_variant LOW 60T>C Gly20Gly
M0116072 CEEHGFCD_00184 213418 3 Skin 0.03 protein_coding synonymous_variant LOW 48T>G Val16Val
M0116073 CEEHGFCD_00184 213448 3 Skin 0.03 protein_coding synonymous_variant LOW 18T>C Tyr6Tyr
M0116074 CEEHGFCD_00185 213469 3 Skin 0.03 protein_coding missense_variant MODERATE 485T>C Val162Ala
M0116075 CEEHGFCD_00188 215715 3 Skin 0.03 protein_coding missense_variant MODERATE 113G>A Arg38His
M0116076 CEEHGFCD_00188 215716 3 Skin 0.03 protein_coding synonymous_variant LOW 114T>C Arg38Arg
M0116077 CEEHGFCD_00188 215723 3 Skin 0.03 protein_coding missense_variant MODERATE 121A>G Ser41Gly
M0116078 CEEHGFCD_00049 59173 3 Skin 0.03 protein_coding synonymous_variant LOW 378A>G Ala126Ala
M0116079 CEEHGFCD_00069 80487 3 Skin 0.03 protein_coding synonymous_variant LOW 192A>G Ser64Ser
M0116080 CEEHGFCD_00055 65970 3 Skin 0.03 protein_coding synonymous_variant LOW 375T>C Ser125Ser
M0116081 CEEHGFCD_00055 66087 3 Skin 0.03 protein_coding synonymous_variant LOW 492A>G Val164Val
M0116082 CEEHGFCD_00055 66132 3 Skin 0.03 protein_coding synonymous_variant LOW 537C>G Ala179Ala
M0116083 CEEHGFCD_00055 66330 3 Skin 0.03 protein_coding synonymous_variant LOW 735T>C Ser245Ser
M0116084 CEEHGFCD_00055 66339 3 Skin 0.03 protein_coding synonymous_variant LOW 744T>C Gly248Gly
M0116085 CEEHGFCD_00055 66408 3 Skin 0.03 protein_coding synonymous_variant LOW 813A>G Ser271Ser
M0116086 CEEHGFCD_00056 66697 3 Skin 0.03 protein_coding synonymous_variant LOW 213A>G Gly71Gly
M0116087 CEEHGFCD_00056 66775 3 Skin 0.03 protein_coding synonymous_variant LOW 291A>G Gly97Gly
M0116088 CEEHGFCD_00056 66869 3 Skin 0.03 protein_coding synonymous_variant LOW 385T>C Leu129Leu
M0116089 CEEHGFCD_00056 67174 3 Skin 0.03 protein_coding synonymous_variant LOW 690C>G Ala230Ala
M0116090 CEEHGFCD_00056 67177 3 Skin 0.03 protein_coding synonymous_variant LOW 693T>C Gly231Gly
M0116091 CEEHGFCD_00056 67178 3 Skin 0.03 protein_coding synonymous_variant LOW 694C>T Leu232Leu
M0116092 CEEHGFCD_00051 67511 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4895C>A None
M0116093 CEEHGFCD_00057 67552 3 Skin 0.03 protein_coding synonymous_variant LOW 717T>G Ala239Ala
M0116094 CEEHGFCD_00057 67555 3 Skin 0.03 protein_coding synonymous_variant LOW 714C>G Ala238Ala
M0116095 CEEHGFCD_00057 67564 3 Skin 0.03 protein_coding synonymous_variant LOW 705T>C Ala235Ala
M0116096 CEEHGFCD_00057 67582 3 Skin 0.03 protein_coding synonymous_variant LOW 687C>G Ala229Ala
M0116097 CEEHGFCD_00057 67651 3 Skin 0.03 protein_coding synonymous_variant LOW 618G>C Ala206Ala
M0116098 CEEHGFCD_00057 67972 3 Skin 0.03 protein_coding synonymous_variant LOW 297T>C Ile99Ile
M0116099 CEEHGFCD_00057 68203 3 Skin 0.03 protein_coding synonymous_variant LOW 66A>C Val22Val
M0116100 CEEHGFCD_00057 68276 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -8T>A None
M0116101 CEEHGFCD_00057 68332 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -64A>G None
M0116102 CEEHGFCD_00057 68393 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -125G>T None
M0116103 CEEHGFCD_00057 68401 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -133T>C None
M0116104 CEEHGFCD_00057 68441 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -173T>C None
M0116105 CEEHGFCD_00123 138344 3 Skin 0.03 protein_coding synonymous_variant LOW 51T>A Gly17Gly
M0116106 CEEHGFCD_00005 5998 3 Skin 0.03 protein_coding synonymous_variant LOW 822T>C Gly274Gly
M0116107 CEEHGFCD_00005 6070 3 Skin 0.03 protein_coding synonymous_variant LOW 750C>T Cys250Cys
M0116108 CEEHGFCD_00005 6220 3 Skin 0.03 protein_coding synonymous_variant LOW 600T>C Ala200Ala
M0116109 CEEHGFCD_00005 6271 3 Skin 0.03 protein_coding synonymous_variant LOW 549T>C Gly183Gly
M0116110 CEEHGFCD_00005 6442 3 Skin 0.03 protein_coding synonymous_variant LOW 378A>G Gly126Gly
M0116111 CEEHGFCD_00005 6511 3 Skin 0.03 protein_coding synonymous_variant LOW 309A>C Ala103Ala
M0116112 CEEHGFCD_00005 6655 3 Skin 0.03 protein_coding synonymous_variant LOW 165T>C Ile55Ile
M0116113 CEEHGFCD_00005 6712 3 Skin 0.03 protein_coding synonymous_variant LOW 108C>G Ala36Ala
M0116114 CEEHGFCD_00005 6750 3 Skin 0.03 protein_coding missense_variant MODERATE 70A>G Thr24Ala
M0116115 CEEHGFCD_00005 6757 3 Skin 0.03 protein_coding synonymous_variant LOW 63T>C Asp21Asp
M0116116 CEEHGFCD_00006 7070 3 Skin 0.03 protein_coding synonymous_variant LOW 1038G>C Ala346Ala
M0116117 CEEHGFCD_00006 7244 3 Skin 0.03 protein_coding synonymous_variant LOW 864T>C Gly288Gly
M0116118 CEEHGFCD_00006 7331 3 Skin 0.03 protein_coding synonymous_variant LOW 777T>C Pro259Pro
M0116119 CEEHGFCD_00006 7781 3 Skin 0.03 protein_coding synonymous_variant LOW 327T>C Thr109Thr
M0116120 CEEHGFCD_00006 7946 3 Skin 0.03 protein_coding synonymous_variant LOW 162T>G Val54Val
M0116121 CEEHGFCD_00006 7961 3 Skin 0.03 protein_coding synonymous_variant LOW 147T>C Gly49Gly
M0116122 CEEHGFCD_00036 42362 3 Skin 0.03 protein_coding synonymous_variant LOW 120T>C Thr40Thr
M0116123 CEEHGFCD_00071 83315 3 Skin 0.03 protein_coding synonymous_variant LOW 450T>C Arg150Arg
M0116124 CEEHGFCD_00071 83558 3 Skin 0.03 protein_coding synonymous_variant LOW 207A>G Ala69Ala
M0116125 CEEHGFCD_00070 83803 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1229G>A None
M0116126 CEEHGFCD_00070 83813 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1239T>C None
M0116127 CEEHGFCD_00072 84371 3 Skin 0.03 protein_coding missense_variant MODERATE 38T>C Val13Ala
M0116128 CEEHGFCD_00073 84733 3 Skin 0.03 protein_coding synonymous_variant LOW 162T>C Arg54Arg
M0116129 CEEHGFCD_00073 84844 3 Skin 0.03 protein_coding synonymous_variant LOW 51A>G Glu17Glu
M0116130 CEEHGFCD_00111 125816 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -130A>G None
M0116131 CEEHGFCD_00111 125824 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -138T>C None
M0116132 CEEHGFCD_00112 126002 3 Skin 0.03 protein_coding missense_variant MODERATE 1026G>C Gln342His
M0116133 CEEHGFCD_00174 203394 3 Skin 0.03 protein_coding missense_variant MODERATE 377G>A Arg126Gln
M0116134 CEEHGFCD_00174 203618 3 Skin 0.03 protein_coding synonymous_variant LOW 153C>G Val51Val
M0116135 CEEHGFCD_00174 203746 3 Skin 0.03 protein_coding synonymous_variant LOW 25T>C Leu9Leu
M0116136 CEEHGFCD_00184 213148 3 Skin 0.03 protein_coding synonymous_variant LOW 318T>C Asn106Asn
M0116137 CEEHGFCD_00184 213315 3 Skin 0.03 protein_coding missense_variant MODERATE 151T>A Leu51Met
M0116138 CEEHGFCD_00119 135311 3 Skin 0.03 protein_coding synonymous_variant LOW 783G>C Ala261Ala
M0116139 CEEHGFCD_00119 135320 3 Skin 0.03 protein_coding synonymous_variant LOW 792T>G Leu264Leu
M0116140 CEEHGFCD_00012 12410 3 Skin 0.03 protein_coding synonymous_variant LOW 507C>G Ala169Ala
M0116141 CEEHGFCD_00012 12890 3 Skin 0.03 protein_coding synonymous_variant LOW 987C>T Cys329Cys
M0116142 CEEHGFCD_00007 13110 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4503T>C None
M0116143 CEEHGFCD_00007 13112 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4505A>C None
M0116144 CEEHGFCD_00007 13126 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4519A>C None
M0116145 CEEHGFCD_00007 13153 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4546C>T None
M0116146 CEEHGFCD_00007 13157 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4550T>G None
M0116147 CEEHGFCD_00007 13158 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4551C>G None
M0116148 CEEHGFCD_00007 13278 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4671C>T None
M0116149 CEEHGFCD_00013 13465 3 Skin 0.03 protein_coding missense_variant MODERATE 121G>A Ala41Thr
M0116150 CEEHGFCD_00062 72813 3 Skin 0.03 protein_coding synonymous_variant LOW 384T>C Ser128Ser
M0116151 CEEHGFCD_00062 72837 3 Skin 0.03 protein_coding synonymous_variant LOW 360T>C Val120Val
M0116152 CEEHGFCD_00062 72966 3 Skin 0.03 protein_coding synonymous_variant LOW 231C>T His77His
M0116153 CEEHGFCD_00058 69017 3 Skin 0.03 protein_coding synonymous_variant LOW 375A>G Leu125Leu
M0116154 CEEHGFCD_00058 69032 3 Skin 0.03 protein_coding synonymous_variant LOW 360A>G Gly120Gly
M0116155 CEEHGFCD_00058 69089 3 Skin 0.03 protein_coding synonymous_variant LOW 303T>C Gly101Gly
M0116156 CEEHGFCD_00057 69413 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1145T>C None
M0116157 CEEHGFCD_00057 69545 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1277T>C None
M0116158 CEEHGFCD_00059 69751 3 Skin 0.03 protein_coding synonymous_variant LOW 135A>G Gln45Gln
M0116159 CEEHGFCD_00059 69928 3 Skin 0.03 protein_coding synonymous_variant LOW 312G>C Pro104Pro
M0116160 CEEHGFCD_00059 69949 3 Skin 0.03 protein_coding synonymous_variant LOW 333G>C Val111Val
M0116161 CEEHGFCD_00059 69952 3 Skin 0.03 protein_coding synonymous_variant LOW 336T>G Val112Val
M0116162 CEEHGFCD_00057 70046 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1778A>G None
M0116163 CEEHGFCD_00057 70069 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1801G>C None
M0116164 CEEHGFCD_00057 70073 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1805A>G None
M0116165 CEEHGFCD_00060 70156 3 Skin 0.03 protein_coding synonymous_variant LOW 916T>C Leu306Leu
M0116166 CEEHGFCD_00060 70284 3 Skin 0.03 protein_coding missense_variant MODERATE 788C>T Ala263Val
M0116167 CEEHGFCD_00060 70361 3 Skin 0.03 protein_coding synonymous_variant LOW 711T>C Ala237Ala
M0116168 CEEHGFCD_00060 70472 3 Skin 0.03 protein_coding synonymous_variant LOW 600T>C Ile200Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
CEEHGFCD_00165 Arsenic (As) 78.9 3.7e-101 1 232 0.9789 0.9831 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
CEEHGFCD_00052 PHI:9127 bab2_0282 75.6 5.1e-170 5 398 0.9825 0.9825 rodents brucellosis ABC transporter permease reduced virulence
CEEHGFCD_00195 PHI:9816 treS 72 2.3e-236 22 535 0.4677 0.7378 eudicots bacterial wilt trehalose synthase reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
CEEHGFCD_00042 AZY95820.1|GT25 100 1.01e-205 1 283 1 0.9593
CEEHGFCD_00174 QXI65374.1|GH15 98.8 0 1 597 0.9967 0.9967
CEEHGFCD_00193 AZY95677.1|GH77 98.4 0 1 610 1 1
CEEHGFCD_00194 AZY95676.1|CBM48|GH13_9 99 0 1 726 1 1
CEEHGFCD_00195 AZY95675.1|GH13_16 99.7 0 1 1099 1 1
CEEHGFCD_00196 AZY95806.1|GH13_3 98 0 1 686 1 0.9258
CEEHGFCD_00211 QXI65338.1|GT1 98.8 4.56e-304 1 414 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term