Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1320
  Reference Plasmid   NZ_KJ599675.1
  Reference Plasmid Size   82075
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0116205 AGJGEFMF_00014 9384 4 Skin 0.10 protein_coding synonymous_variant LOW 1386T>C Arg462Arg
M0116206 AGJGEFMF_00014 10775 3 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -6T>C None
M0116207 AGJGEFMF_00017 12189 3 Skin 0.07 protein_coding synonymous_variant LOW 150T>C Ser50Ser
M0116208 AGJGEFMF_00044 34584 3 Skin 0.07 protein_coding synonymous_variant LOW 141T>C Gly47Gly
M0116209 AGJGEFMF_00045 34913 3 Skin 0.07 protein_coding missense_variant MODERATE 452C>T Thr151Ile
M0116210 AGJGEFMF_00045 35035 3 Skin 0.07 protein_coding synonymous_variant LOW 330T>C Gly110Gly
M0116211 AGJGEFMF_00046 35627 3 Skin 0.07 protein_coding synonymous_variant LOW 3192T>C Ile1064Ile
M0116212 AGJGEFMF_00046 35681 3 Skin 0.07 protein_coding synonymous_variant LOW 3138A>G Lys1046Lys
M0116213 AGJGEFMF_00046 35744 3 Skin 0.07 protein_coding synonymous_variant LOW 3075A>C Ala1025Ala
M0116214 AGJGEFMF_00039 30286 4 Skin 0.10 protein_coding missense_variant MODERATE 169A>C Asn57His
M0116215 AGJGEFMF_00039 30307 4 Skin 0.10 protein_coding missense_variant MODERATE 148A>G Thr50Ala
M0116216 AGJGEFMF_00039 30317 4 Skin 0.10 protein_coding synonymous_variant LOW 138T>C Asn46Asn
M0116217 AGJGEFMF_00039 30326 4 Skin 0.10 protein_coding synonymous_variant LOW 129T>C Ala43Ala
M0116218 AGJGEFMF_00039 30356 5 Skin 0.12 protein_coding synonymous_variant LOW 99A>G Ala33Ala
M0116219 AGJGEFMF_00039 30405 4 Skin 0.10 protein_coding missense_variant MODERATE 50G>A Gly17Asp
M0116220 AGJGEFMF_00040 30514 6 Skin 0.14 protein_coding synonymous_variant LOW 711G>A Glu237Glu
M0116221 AGJGEFMF_00040 30556 4 Skin 0.10 protein_coding synonymous_variant LOW 669G>A Gly223Gly
M0116222 AGJGEFMF_00040 30796 4 Skin 0.10 protein_coding synonymous_variant LOW 429C>G Ser143Ser
M0116223 AGJGEFMF_00040 30918 3 Skin 0.07 protein_coding synonymous_variant LOW 307C>T Leu103Leu
M0116224 AGJGEFMF_00040 31003 3 Skin 0.07 protein_coding synonymous_variant LOW 222C>G Ala74Ala
M0116225 AGJGEFMF_00041 31337 5 Skin 0.12 protein_coding synonymous_variant LOW 1650T>C Arg550Arg
M0116226 AGJGEFMF_00041 31787 6 Skin 0.14 protein_coding synonymous_variant LOW 1200T>C Arg400Arg
M0116227 AGJGEFMF_00041 32546 6 Skin 0.14 protein_coding missense_variant MODERATE 441T>G Asp147Glu
M0116228 AGJGEFMF_00079 70709 3 Skin 0.07 protein_coding synonymous_variant LOW 54A>G Ala18Ala
M0116229 AGJGEFMF_00079 70712 3 Skin 0.07 protein_coding synonymous_variant LOW 57C>T His19His
M0116230 AGJGEFMF_00079 71109 4 Skin 0.10 protein_coding missense_variant MODERATE 454A>G Thr152Ala
M0116231 AGJGEFMF_00079 71492 4 Skin 0.10 protein_coding synonymous_variant LOW 837T>C His279His
M0116232 AGJGEFMF_00079 71702 3 Skin 0.07 protein_coding synonymous_variant LOW 1047A>G Lys349Lys
M0116233 AGJGEFMF_00079 71816 3 Skin 0.07 protein_coding synonymous_variant LOW 1161C>T Tyr387Tyr
M0116234 AGJGEFMF_00079 72332 4 Skin 0.10 protein_coding missense_variant MODERATE 1677T>G Asp559Glu
M0116235 AGJGEFMF_00079 72626 3 Skin 0.07 protein_coding synonymous_variant LOW 1971A>G Glu657Glu
M0116236 AGJGEFMF_00079 72689 4 Skin 0.10 protein_coding synonymous_variant LOW 2034A>C Gly678Gly
M0116237 AGJGEFMF_00068 55355 4 Skin 0.10 protein_coding synonymous_variant LOW 372T>C Pro124Pro
M0116238 AGJGEFMF_00068 55374 3 Skin 0.07 protein_coding missense_variant MODERATE 391G>A Ala131Thr
M0116239 AGJGEFMF_00069 55750 3 Skin 0.07 protein_coding synonymous_variant LOW 255T>C Pro85Pro
M0116240 AGJGEFMF_00069 55807 3 Skin 0.07 protein_coding synonymous_variant LOW 312T>C Gly104Gly
M0116241 AGJGEFMF_00069 56395 3 Skin 0.07 protein_coding synonymous_variant LOW 900C>A Ala300Ala
M0116242 AGJGEFMF_00069 58028 3 Skin 0.07 protein_coding missense_variant MODERATE 2533A>G Thr845Ala
M0116243 AGJGEFMF_00070 58089 4 Skin 0.10 protein_coding synonymous_variant LOW 42C>T Ala14Ala
M0116244 AGJGEFMF_00070 58096 4 Skin 0.10 protein_coding synonymous_variant LOW 49C>T Leu17Leu
M0116245 AGJGEFMF_00070 58306 4 Skin 0.10 protein_coding missense_variant MODERATE 259C>T Leu87Phe
M0116246 AGJGEFMF_00070 58369 3 Skin 0.07 protein_coding missense_variant MODERATE 322A>G Ser108Gly
M0116247 AGJGEFMF_00070 58668 3 Skin 0.07 protein_coding synonymous_variant LOW 621C>A Gly207Gly
M0116248 AGJGEFMF_00070 59024 3 Skin 0.07 protein_coding missense_variant MODERATE 977C>T Thr326Ile
M0116249 AGJGEFMF_00070 59051 3 Skin 0.07 protein_coding missense_variant MODERATE 1004T>C Val335Ala
M0116250 AGJGEFMF_00070 59074 3 Skin 0.07 protein_coding missense_variant MODERATE 1027G>C Val343Leu
M0116251 AGJGEFMF_00070 59082 3 Skin 0.07 protein_coding synonymous_variant LOW 1035T>C Gly345Gly
M0116252 AGJGEFMF_00071 60212 3 Skin 0.07 protein_coding synonymous_variant LOW 222T>C Arg74Arg
M0116253 AGJGEFMF_00071 60709 3 Skin 0.07 protein_coding missense_variant MODERATE 719C>A Thr240Lys
M0116254 AGJGEFMF_00043 33250 5 Skin 0.12 protein_coding missense_variant MODERATE 824T>A Val275Glu
M0116255 AGJGEFMF_00043 33304 3 Skin 0.07 protein_coding missense_variant MODERATE 770C>T Thr257Ile
M0116256 AGJGEFMF_00043 33354 5 Skin 0.12 protein_coding synonymous_variant LOW 720G>C Gly240Gly
M0116257 AGJGEFMF_00043 33505 4 Skin 0.10 protein_coding missense_variant MODERATE 569G>A Cys190Tyr
M0116258 AGJGEFMF_00043 33506 4 Skin 0.10 protein_coding missense_variant MODERATE 568T>C Cys190Arg
M0116259 AGJGEFMF_00043 33512 4 Skin 0.10 protein_coding missense_variant MODERATE 562C>A Gln188Lys
M0116260 AGJGEFMF_00043 33576 4 Skin 0.10 protein_coding synonymous_variant LOW 498C>A Arg166Arg
M0116261 AGJGEFMF_00043 33618 4 Skin 0.10 protein_coding synonymous_variant LOW 456C>T Tyr152Tyr
M0116262 AGJGEFMF_00043 33849 3 Skin 0.07 protein_coding synonymous_variant LOW 225A>G Pro75Pro
M0116263 AGJGEFMF_00043 34053 3 Skin 0.07 protein_coding synonymous_variant LOW 21T>C Ser7Ser
M0116264 AGJGEFMF_00044 34278 3 Skin 0.07 protein_coding synonymous_variant LOW 447T>C His149His
M0116265 AGJGEFMF_00069 55561 3 Skin 0.07 protein_coding synonymous_variant LOW 66G>A Ala22Ala
M0116266 AGJGEFMF_00069 56536 3 Skin 0.07 protein_coding synonymous_variant LOW 1041A>G Ser347Ser
M0116267 AGJGEFMF_00070 58192 3 Skin 0.07 protein_coding missense_variant MODERATE 145A>G Ile49Val
M0116268 AGJGEFMF_00070 58257 3 Skin 0.07 protein_coding synonymous_variant LOW 210C>A Gly70Gly
M0116269 AGJGEFMF_00040 30499 4 Skin 0.10 protein_coding synonymous_variant LOW 726C>T Asp242Asp
M0116270 AGJGEFMF_00041 32807 8 Skin 0.19 protein_coding synonymous_variant LOW 180C>G Pro60Pro
M0116271 AGJGEFMF_00043 33408 4 Skin 0.10 protein_coding synonymous_variant LOW 666C>T Ala222Ala
M0116272 AGJGEFMF_00079 72472 3 Skin 0.07 protein_coding missense_variant MODERATE 1817C>G Ala606Gly
M0116273 AGJGEFMF_00035 27662 4 Skin 0.10 protein_coding missense_variant MODERATE 887G>T Ser296Ile
M0116274 AGJGEFMF_00040 31012 4 Skin 0.10 protein_coding synonymous_variant LOW 213G>A Arg71Arg
M0116275 AGJGEFMF_00040 31141 4 Skin 0.10 protein_coding synonymous_variant LOW 84C>T Gly28Gly
M0116276 AGJGEFMF_00042 33185 3 Skin 0.07 protein_coding synonymous_variant LOW 51C>T Gly17Gly
M0116277 AGJGEFMF_00042 33190 3 Skin 0.07 protein_coding missense_variant MODERATE 46T>G Cys16Gly
M0116278 AGJGEFMF_00036 28569 3 Skin 0.07 protein_coding missense_variant MODERATE 310C>A Leu104Met
M0116279 AGJGEFMF_00040 31018 4 Skin 0.10 protein_coding synonymous_variant LOW 207A>G Arg69Arg
M0116280 AGJGEFMF_00041 31442 3 Skin 0.07 protein_coding synonymous_variant LOW 1545G>A Glu515Glu
M0116281 AGJGEFMF_00041 31460 4 Skin 0.10 protein_coding synonymous_variant LOW 1527T>C Ala509Ala
M0116282 AGJGEFMF_00041 31462 4 Skin 0.10 protein_coding missense_variant MODERATE 1525G>T Ala509Ser
M0116283 AGJGEFMF_00046 38714 3 Skin 0.07 protein_coding synonymous_variant LOW 105T>C Thr35Thr
M0116284 AGJGEFMF_00046 38807 3 Skin 0.07 protein_coding synonymous_variant LOW 12T>C Leu4Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
AGJGEFMF_00046 AKA20882.1|CBM50 100 0 1 1157 1 1
AGJGEFMF_00071 AKA20907.1|GH184 100 0 1 588 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term