Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1329
  Reference Plasmid   NZ_KR152226.1
  Reference Plasmid Size   75989
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0116285 BJONBMHF_00032 30662 4 Skin 0.08 protein_coding missense_variant MODERATE 232C>A Leu78Ile
M0116286 BJONBMHF_00032 30687 3 Skin 0.06 protein_coding synonymous_variant LOW 207G>A Arg69Arg
M0116287 BJONBMHF_00033 31111 4 Skin 0.08 protein_coding synonymous_variant LOW 1545A>G Glu515Glu
M0116288 BJONBMHF_00033 32230 4 Skin 0.08 protein_coding synonymous_variant LOW 426T>C Ala142Ala
M0116289 BJONBMHF_00033 32337 5 Skin 0.10 protein_coding missense_variant MODERATE 319C>A Leu107Ile
M0116290 BJONBMHF_00033 32384 5 Skin 0.10 protein_coding missense_variant MODERATE 272T>C Val91Ala
M0116291 BJONBMHF_00033 32420 5 Skin 0.10 protein_coding missense_variant MODERATE 236C>T Ala79Val
M0116292 BJONBMHF_00033 32623 3 Skin 0.06 protein_coding synonymous_variant LOW 33T>G Gly11Gly
M0116293 BJONBMHF_00027 32685 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4950T>C None
M0116294 BJONBMHF_00036 34544 3 Skin 0.06 protein_coding synonymous_variant LOW 390T>C Ser130Ser
M0116295 BJONBMHF_00036 34649 3 Skin 0.06 protein_coding synonymous_variant LOW 285A>C Gly95Gly
M0116296 BJONBMHF_00036 34789 3 Skin 0.06 protein_coding missense_variant MODERATE 145C>A Arg49Ser
M0116297 BJONBMHF_00036 34791 3 Skin 0.06 protein_coding missense_variant MODERATE 143T>C Phe48Ser
M0116298 BJONBMHF_00036 34889 3 Skin 0.06 protein_coding synonymous_variant LOW 45A>C Ala15Ala
M0116299 BJONBMHF_00036 34907 3 Skin 0.06 protein_coding synonymous_variant LOW 27T>C Gly9Gly
M0116300 BJONBMHF_00037 35468 3 Skin 0.06 protein_coding synonymous_variant LOW 117T>C Pro39Pro
M0116301 BJONBMHF_00038 35697 3 Skin 0.06 protein_coding synonymous_variant LOW 528A>C Val176Val
M0116302 BJONBMHF_00038 35901 3 Skin 0.06 protein_coding synonymous_variant LOW 324C>A Gly108Gly
M0116303 BJONBMHF_00038 36086 3 Skin 0.06 protein_coding missense_variant MODERATE 139G>A Ala47Thr
M0116304 BJONBMHF_00002 1696 3 Skin 0.06 protein_coding missense_variant MODERATE 1014T>G His338Gln
M0116305 BJONBMHF_00002 1864 3 Skin 0.06 protein_coding synonymous_variant LOW 846T>C Asp282Asp
M0116306 BJONBMHF_00002 1963 3 Skin 0.06 protein_coding synonymous_variant LOW 747T>G Ala249Ala
M0116307 BJONBMHF_00002 2212 3 Skin 0.06 protein_coding synonymous_variant LOW 498A>G Ala166Ala
M0116308 BJONBMHF_00002 2687 3 Skin 0.06 protein_coding missense_variant MODERATE 23C>A Ala8Asp
M0116309 BJONBMHF_00003 3385 3 Skin 0.06 protein_coding synonymous_variant LOW 145T>C Leu49Leu
M0116310 BJONBMHF_00007 4965 3 Skin 0.06 protein_coding missense_variant MODERATE 47G>C Ser16Thr
M0116311 BJONBMHF_00007 5018 3 Skin 0.06 protein_coding missense_variant MODERATE 100T>C Cys34Arg
M0116312 BJONBMHF_00032 30681 3 Skin 0.06 protein_coding synonymous_variant LOW 213A>G Arg71Arg
M0116313 BJONBMHF_00032 30750 3 Skin 0.06 protein_coding synonymous_variant LOW 144T>C Gly48Gly
M0116314 BJONBMHF_00039 36516 3 Skin 0.06 protein_coding missense_variant MODERATE 3157G>A Ala1053Thr
M0116315 BJONBMHF_00039 36522 3 Skin 0.06 protein_coding missense_variant MODERATE 3151G>A Ala1051Thr
M0116316 BJONBMHF_00039 37192 3 Skin 0.06 protein_coding synonymous_variant LOW 2481A>G Ala827Ala
M0116317 BJONBMHF_00039 37236 3 Skin 0.06 protein_coding missense_variant MODERATE 2437C>G Pro813Ala
M0116318 BJONBMHF_00010 7119 3 Skin 0.06 protein_coding synonymous_variant LOW 78T>C Ala26Ala
M0116319 BJONBMHF_00039 37365 3 Skin 0.06 protein_coding missense_variant MODERATE 2308A>G Thr770Ala
M0116320 BJONBMHF_00039 37448 4 Skin 0.08 protein_coding missense_variant MODERATE 2225C>A Ala742Glu
M0116321 BJONBMHF_00039 38773 3 Skin 0.06 protein_coding synonymous_variant LOW 900G>C Ala300Ala
M0116322 BJONBMHF_00039 39002 3 Skin 0.06 protein_coding missense_variant MODERATE 671C>A Pro224Gln
M0116323 BJONBMHF_00039 39015 3 Skin 0.06 protein_coding missense_variant MODERATE 658T>G Ser220Ala
M0116324 BJONBMHF_00040 40041 3 Skin 0.06 protein_coding synonymous_variant LOW 990G>C Thr330Thr
M0116325 BJONBMHF_00040 40110 3 Skin 0.06 protein_coding synonymous_variant LOW 921T>G Leu307Leu
M0116326 BJONBMHF_00040 40197 4 Skin 0.08 protein_coding synonymous_variant LOW 834G>C Arg278Arg
M0116327 BJONBMHF_00040 40407 3 Skin 0.06 protein_coding synonymous_variant LOW 624A>G Ala208Ala
M0116328 BJONBMHF_00038 41150 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4926T>G None
M0116329 BJONBMHF_00039 41408 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -1736A>G None
M0116330 BJONBMHF_00043 43155 4 Skin 0.08 protein_coding missense_variant MODERATE 29G>A Cys10Tyr
M0116331 BJONBMHF_00045 43965 3 Skin 0.06 protein_coding missense_variant MODERATE 103A>C Ile35Leu
M0116332 BJONBMHF_00046 44316 3 Skin 0.06 protein_coding synonymous_variant LOW 159C>T Ala53Ala
M0116333 BJONBMHF_00046 44343 3 Skin 0.06 protein_coding synonymous_variant LOW 132C>T Gly44Gly
M0116334 BJONBMHF_00047 44546 5 Skin 0.10 protein_coding synonymous_variant LOW 156A>C Ala52Ala
M0116335 BJONBMHF_00047 44635 3 Skin 0.06 protein_coding missense_variant MODERATE 67A>G Thr23Ala
M0116336 BJONBMHF_00040 44725 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -3695C>T None
M0116337 BJONBMHF_00048 45047 4 Skin 0.08 protein_coding synonymous_variant LOW 627T>C Ala209Ala
M0116338 BJONBMHF_00048 45530 4 Skin 0.08 protein_coding synonymous_variant LOW 144C>T Ser48Ser
M0116339 BJONBMHF_00049 45832 3 Skin 0.06 protein_coding missense_variant MODERATE 706T>G Cys236Gly
M0116340 BJONBMHF_00049 46031 3 Skin 0.06 protein_coding synonymous_variant LOW 507T>C Asp169Asp
M0116341 BJONBMHF_00049 46163 3 Skin 0.06 protein_coding synonymous_variant LOW 375A>G Glu125Glu
M0116342 BJONBMHF_00049 46404 3 Skin 0.06 protein_coding missense_variant MODERATE 134A>G Glu45Gly
M0116343 BJONBMHF_00050 46541 3 Skin 0.06 protein_coding missense_variant MODERATE 1577A>C Asp526Ala
M0116344 BJONBMHF_00051 48669 3 Skin 0.06 protein_coding missense_variant MODERATE 270T>G His90Gln
M0116345 BJONBMHF_00052 49500 3 Skin 0.06 protein_coding missense_variant MODERATE 140C>T Ala47Val
M0116346 BJONBMHF_00048 49780 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4107T>G None
M0116347 BJONBMHF_00053 49807 3 Skin 0.06 protein_coding synonymous_variant LOW 24A>C Leu8Leu
M0116348 BJONBMHF_00053 49846 3 Skin 0.06 protein_coding missense_variant MODERATE 63A>G Ile21Met
M0116349 BJONBMHF_00048 50127 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4454G>T None
M0116350 BJONBMHF_00048 50141 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4468T>C None
M0116351 BJONBMHF_00048 50153 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4480G>T None
M0116352 BJONBMHF_00048 50186 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4513C>G None
M0116353 BJONBMHF_00054 50525 3 Skin 0.06 protein_coding synonymous_variant LOW 261G>A Pro87Pro
M0116354 BJONBMHF_00054 50753 4 Skin 0.08 protein_coding synonymous_variant LOW 489G>C Leu163Leu
M0116355 BJONBMHF_00054 50762 4 Skin 0.08 protein_coding synonymous_variant LOW 498T>C Leu166Leu
M0116356 BJONBMHF_00054 50999 4 Skin 0.08 protein_coding synonymous_variant LOW 735T>C Arg245Arg
M0116357 BJONBMHF_00054 51126 4 Skin 0.08 protein_coding synonymous_variant LOW 862T>C Leu288Leu
M0116358 BJONBMHF_00055 51314 4 Skin 0.08 protein_coding missense_variant MODERATE 125T>C Val42Ala
M0116359 BJONBMHF_00055 51370 3 Skin 0.06 protein_coding missense_variant MODERATE 181A>G Lys61Glu
M0116360 BJONBMHF_00055 51420 3 Skin 0.06 protein_coding missense_variant MODERATE 231C>A Asp77Glu
M0116361 BJONBMHF_00062 56756 3 Skin 0.06 protein_coding synonymous_variant LOW 342A>G Leu114Leu
M0116362 BJONBMHF_00062 56951 4 Skin 0.08 protein_coding synonymous_variant LOW 537A>C Ala179Ala
M0116363 BJONBMHF_00062 56963 4 Skin 0.08 protein_coding synonymous_variant LOW 549C>G Ala183Ala
M0116364 BJONBMHF_00062 57663 4 Skin 0.08 protein_coding synonymous_variant LOW 1249T>C Leu417Leu
M0116365 BJONBMHF_00062 57699 4 Skin 0.08 protein_coding missense_variant MODERATE 1285C>A Leu429Met
M0116366 BJONBMHF_00062 57770 4 Skin 0.08 protein_coding synonymous_variant LOW 1356T>C Ser452Ser
M0116367 BJONBMHF_00062 57899 5 Skin 0.10 protein_coding synonymous_variant LOW 1485C>A Gly495Gly
M0116368 BJONBMHF_00063 60094 4 Skin 0.08 protein_coding synonymous_variant LOW 1128G>A Leu376Leu
M0116369 BJONBMHF_00063 60136 5 Skin 0.10 protein_coding synonymous_variant LOW 1170T>C Gly390Gly
M0116370 BJONBMHF_00063 60194 5 Skin 0.10 protein_coding synonymous_variant LOW 1228T>C Leu410Leu
M0116371 BJONBMHF_00063 60262 4 Skin 0.08 protein_coding synonymous_variant LOW 1296T>C Ala432Ala
M0116372 BJONBMHF_00063 60313 5 Skin 0.10 protein_coding synonymous_variant LOW 1347G>C Ala449Ala
M0116373 BJONBMHF_00063 60343 4 Skin 0.08 protein_coding synonymous_variant LOW 1377T>C Gly459Gly
M0116374 BJONBMHF_00063 60520 4 Skin 0.08 protein_coding synonymous_variant LOW 1554T>C Pro518Pro
M0116375 BJONBMHF_00064 61041 5 Skin 0.10 protein_coding synonymous_variant LOW 132T>C Ser44Ser
M0116376 BJONBMHF_00064 61068 4 Skin 0.08 protein_coding synonymous_variant LOW 159T>C Thr53Thr
M0116377 BJONBMHF_00064 61348 3 Skin 0.06 protein_coding missense_variant MODERATE 439A>C Ile147Leu
M0116378 BJONBMHF_00064 61416 6 Skin 0.13 protein_coding synonymous_variant LOW 507T>C Ala169Ala
M0116379 BJONBMHF_00064 61443 4 Skin 0.08 protein_coding synonymous_variant LOW 534T>G Val178Val
M0116380 BJONBMHF_00064 61573 3 Skin 0.06 protein_coding missense_variant MODERATE 664G>C Gly222Arg
M0116381 BJONBMHF_00064 61574 3 Skin 0.06 protein_coding missense_variant MODERATE 665G>A Gly222Glu
M0116382 BJONBMHF_00064 61596 3 Skin 0.06 protein_coding synonymous_variant LOW 687G>A Ala229Ala
M0116383 BJONBMHF_00064 61662 3 Skin 0.06 protein_coding synonymous_variant LOW 753C>A Ala251Ala
M0116384 BJONBMHF_00064 62233 6 Skin 0.13 protein_coding missense_variant MODERATE 1324G>A Gly442Ser
M0116385 BJONBMHF_00064 62373 5 Skin 0.10 protein_coding synonymous_variant LOW 1464T>C Gly488Gly
M0116386 BJONBMHF_00064 62403 6 Skin 0.13 protein_coding synonymous_variant LOW 1494T>C Thr498Thr
M0116387 BJONBMHF_00065 63344 3 Skin 0.06 protein_coding synonymous_variant LOW 672T>C Gly224Gly
M0116388 BJONBMHF_00026 25919 4 Skin 0.08 protein_coding missense_variant MODERATE 526G>A Val176Ile
M0116389 BJONBMHF_00026 25977 4 Skin 0.08 protein_coding synonymous_variant LOW 468G>A Val156Val
M0116390 BJONBMHF_00026 25978 4 Skin 0.08 protein_coding missense_variant MODERATE 467T>C Val156Ala
M0116391 BJONBMHF_00026 25980 4 Skin 0.08 protein_coding synonymous_variant LOW 465C>T Asp155Asp
M0116392 BJONBMHF_00026 26001 4 Skin 0.08 protein_coding synonymous_variant LOW 444A>G Pro148Pro
M0116393 BJONBMHF_00026 26005 4 Skin 0.08 protein_coding missense_variant MODERATE 440A>G Gln147Arg
M0116394 BJONBMHF_00026 26007 4 Skin 0.08 protein_coding synonymous_variant LOW 438A>G Ala146Ala
M0116395 BJONBMHF_00026 26008 4 Skin 0.08 protein_coding missense_variant MODERATE 437C>A Ala146Glu
M0116396 BJONBMHF_00026 26031 4 Skin 0.08 protein_coding synonymous_variant LOW 414T>C Ile138Ile
M0116397 BJONBMHF_00026 26053 4 Skin 0.08 protein_coding missense_variant MODERATE 392G>A Arg131His
M0116398 BJONBMHF_00026 26062 4 Skin 0.08 protein_coding missense_variant MODERATE 383G>A Arg128His
M0116399 BJONBMHF_00023 27908 4 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4683A>G None
M0116400 BJONBMHF_00062 56924 3 Skin 0.06 protein_coding synonymous_variant LOW 510C>T Ala170Ala
M0116401 BJONBMHF_00062 56925 3 Skin 0.06 protein_coding missense_variant MODERATE 511A>G Ile171Val
M0116402 BJONBMHF_00062 57968 4 Skin 0.08 protein_coding synonymous_variant LOW 1554A>G Glu518Glu
M0116403 BJONBMHF_00062 58155 3 Skin 0.06 protein_coding missense_variant MODERATE 1741C>G Gln581Glu
M0116404 BJONBMHF_00062 58163 4 Skin 0.08 protein_coding synonymous_variant LOW 1749C>T His583His
M0116405 BJONBMHF_00063 59176 5 Skin 0.10 protein_coding synonymous_variant LOW 210C>A Gly70Gly
M0116406 BJONBMHF_00063 59359 4 Skin 0.08 protein_coding synonymous_variant LOW 393G>A Ala131Ala
M0116407 BJONBMHF_00063 59717 5 Skin 0.10 protein_coding missense_variant MODERATE 751A>G Ser251Gly
M0116408 BJONBMHF_00063 60049 3 Skin 0.06 protein_coding synonymous_variant LOW 1083C>T Cys361Cys
M0116409 BJONBMHF_00063 60727 3 Skin 0.06 protein_coding synonymous_variant LOW 1761C>G Thr587Thr
M0116410 BJONBMHF_00063 60730 3 Skin 0.06 protein_coding synonymous_variant LOW 1764C>G Val588Val
M0116411 BJONBMHF_00063 60760 4 Skin 0.08 protein_coding synonymous_variant LOW 1794T>C Pro598Pro
M0116412 BJONBMHF_00064 61338 4 Skin 0.08 protein_coding synonymous_variant LOW 429G>C Arg143Arg
M0116413 BJONBMHF_00064 62382 4 Skin 0.08 protein_coding missense_variant MODERATE 1473G>C Glu491Asp
M0116414 BJONBMHF_00047 44665 3 Skin 0.06 protein_coding missense_variant MODERATE 37A>G Thr13Ala
M0116415 BJONBMHF_00047 44666 3 Skin 0.06 protein_coding synonymous_variant LOW 36T>C Arg12Arg
M0116416 BJONBMHF_00068 67013 3 Skin 0.06 protein_coding synonymous_variant LOW 837T>C His279His
M0116417 BJONBMHF_00068 67863 3 Skin 0.06 protein_coding missense_variant MODERATE 1687A>G Met563Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
BJONBMHF_00039 AKF15817.1|CBM50 100 0 1 1155 1 1
BJONBMHF_00064 AKF15843.1|GH184 100 0 1 588 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term