Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1368
  Reference Plasmid   NZ_LT985315.1
  Reference Plasmid Size   47447
  Reference Plasmid GC Content   0.44
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0208106 FGJCMKOL_00003 1745 7 Gut 0.78 protein_coding synonymous_variant LOW 39A>T Arg13Arg
M0208107 FGJCMKOL_00003 1766 7 Gut 0.78 protein_coding synonymous_variant LOW 60C>A Ile20Ile
M0208108 FGJCMKOL_00003 1858 7 Gut 0.78 protein_coding missense_variant MODERATE 152C>T Ala51Val
M0208109 FGJCMKOL_00003 1925 7 Gut 0.78 protein_coding synonymous_variant LOW 219G>A Val73Val
M0208110 FGJCMKOL_00003 1937 7 Gut 0.78 protein_coding synonymous_variant LOW 231G>T Gly77Gly
M0208111 FGJCMKOL_00004 2165 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -125A>G None
M0208112 FGJCMKOL_00004 2257 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -33G>A None
M0208113 FGJCMKOL_00006 3397 7 Gut 0.78 protein_coding missense_variant MODERATE 196A>G Ile66Val
M0208114 FGJCMKOL_00006 3429 7 Gut 0.78 protein_coding missense_variant MODERATE 164A>C His55Pro
M0208115 FGJCMKOL_00023 14896 7 Gut 0.78 protein_coding stop_lost&splice_region_variant HIGH 661T>C Ter221Glnext*?
M0208116 FGJCMKOL_00023 15134 7 Gut 0.78 protein_coding synonymous_variant LOW 423G>T Val141Val
M0208117 FGJCMKOL_00018 15773 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3388C>T None
M0208118 FGJCMKOL_00018 17069 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4684A>G None
M0208119 FGJCMKOL_00027 19094 7 Gut 0.78 protein_coding missense_variant MODERATE 488A>G Asp163Gly
M0208120 FGJCMKOL_00027 19143 7 Gut 0.78 protein_coding missense_variant MODERATE 537T>G Asp179Glu
M0208121 FGJCMKOL_00027 19151 7 Gut 0.78 protein_coding missense_variant MODERATE 545C>T Thr182Ile
M0208122 FGJCMKOL_00027 19176 7 Gut 0.78 protein_coding synonymous_variant LOW 570A>G Glu190Glu
M0208123 FGJCMKOL_00027 19182 7 Gut 0.78 protein_coding synonymous_variant LOW 576T>C Tyr192Tyr
M0208124 FGJCMKOL_00027 19185 7 Gut 0.78 protein_coding synonymous_variant LOW 579A>T Pro193Pro
M0208125 FGJCMKOL_00027 19200 7 Gut 0.78 protein_coding synonymous_variant LOW 594A>C Ser198Ser
M0208126 FGJCMKOL_00027 19216 7 Gut 0.78 protein_coding missense_variant MODERATE 610A>G Ile204Val
M0208127 FGJCMKOL_00027 19266 7 Gut 0.78 protein_coding synonymous_variant LOW 660C>T His220His
M0208128 FGJCMKOL_00027 19416 7 Gut 0.78 protein_coding synonymous_variant LOW 810G>A Leu270Leu
M0208129 FGJCMKOL_00027 19464 7 Gut 0.78 protein_coding synonymous_variant LOW 858T>C His286His
M0208130 FGJCMKOL_00027 19526 7 Gut 0.78 protein_coding missense_variant MODERATE 920T>C Ile307Thr
M0208131 FGJCMKOL_00027 19548 7 Gut 0.78 protein_coding synonymous_variant LOW 942A>C Thr314Thr
M0208132 FGJCMKOL_00027 19602 7 Gut 0.78 protein_coding synonymous_variant LOW 996G>A Gln332Gln
M0208133 FGJCMKOL_00027 19702 7 Gut 0.78 protein_coding missense_variant MODERATE 1096C>A Leu366Ile
M0208134 FGJCMKOL_00027 19704 7 Gut 0.78 protein_coding synonymous_variant LOW 1098A>G Leu366Leu
M0208135 FGJCMKOL_00027 19837 7 Gut 0.78 protein_coding missense_variant MODERATE 1231T>C Tyr411His
M0208136 FGJCMKOL_00027 19929 7 Gut 0.78 protein_coding synonymous_variant LOW 1323A>G Glu441Glu
M0208137 FGJCMKOL_00023 19956 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4400T>C None
M0208138 FGJCMKOL_00023 19992 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4436T>C None
M0208139 FGJCMKOL_00023 20003 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4447G>A None
M0208140 FGJCMKOL_00023 20010 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4454T>G None
M0208141 FGJCMKOL_00023 20035 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4479C>T None
M0208142 FGJCMKOL_00029 20796 7 Gut 0.78 protein_coding missense_variant MODERATE 88A>G Ile30Val
M0208143 FGJCMKOL_00029 20797 7 Gut 0.78 protein_coding synonymous_variant LOW 87G>A Glu29Glu
M0208144 FGJCMKOL_00030 20923 7 Gut 0.78 protein_coding synonymous_variant LOW 183T>C Ser61Ser
M0208145 FGJCMKOL_00030 20941 7 Gut 0.78 protein_coding synonymous_variant LOW 165T>G Leu55Leu
M0208146 FGJCMKOL_00030 20953 7 Gut 0.78 protein_coding synonymous_variant LOW 153T>G Val51Val
M0208147 FGJCMKOL_00030 20974 7 Gut 0.78 protein_coding synonymous_variant LOW 132C>T Asp44Asp
M0208148 FGJCMKOL_00030 21016 7 Gut 0.78 protein_coding synonymous_variant LOW 90G>A Lys30Lys
M0208149 FGJCMKOL_00031 21118 7 Gut 0.78 protein_coding missense_variant MODERATE 2138C>T Ala713Val
M0208150 FGJCMKOL_00031 21156 7 Gut 0.78 protein_coding synonymous_variant LOW 2100C>T Val700Val
M0208151 FGJCMKOL_00031 21183 7 Gut 0.78 protein_coding synonymous_variant LOW 2073T>C Ser691Ser
M0208152 FGJCMKOL_00031 21240 7 Gut 0.78 protein_coding synonymous_variant LOW 2016C>A Ala672Ala
M0208153 FGJCMKOL_00031 21246 7 Gut 0.78 protein_coding synonymous_variant LOW 2010A>G Ala670Ala
M0208154 FGJCMKOL_00031 21253 7 Gut 0.78 protein_coding missense_variant MODERATE 2003T>C Ile668Thr
M0208155 FGJCMKOL_00031 21268 7 Gut 0.78 protein_coding missense_variant MODERATE 1988C>T Ser663Phe
M0208156 FGJCMKOL_00031 21321 7 Gut 0.78 protein_coding synonymous_variant LOW 1935G>A Arg645Arg
M0208157 FGJCMKOL_00031 21336 7 Gut 0.78 protein_coding synonymous_variant LOW 1920G>A Lys640Lys
M0208158 FGJCMKOL_00031 21417 7 Gut 0.78 protein_coding missense_variant MODERATE 1839G>C Glu613Asp
M0208159 FGJCMKOL_00031 21455 7 Gut 0.78 protein_coding synonymous_variant LOW 1801T>C Leu601Leu
M0208160 FGJCMKOL_00031 21470 7 Gut 0.78 protein_coding missense_variant MODERATE 1786C>G Gln596Glu
M0208161 FGJCMKOL_00031 21501 7 Gut 0.78 protein_coding synonymous_variant LOW 1755T>A Ser585Ser
M0208162 FGJCMKOL_00031 21503 7 Gut 0.78 protein_coding missense_variant MODERATE 1753T>A Ser585Thr
M0208163 FGJCMKOL_00031 21507 7 Gut 0.78 protein_coding synonymous_variant LOW 1749A>G Lys583Lys
M0208164 FGJCMKOL_00031 21552 7 Gut 0.78 protein_coding synonymous_variant LOW 1704A>T Pro568Pro
M0208165 FGJCMKOL_00031 21574 7 Gut 0.78 protein_coding missense_variant MODERATE 1682G>A Cys561Tyr
M0208166 FGJCMKOL_00031 21588 7 Gut 0.78 protein_coding synonymous_variant LOW 1668G>T Pro556Pro
M0208167 FGJCMKOL_00031 21609 7 Gut 0.78 protein_coding synonymous_variant LOW 1647C>G Leu549Leu
M0208168 FGJCMKOL_00031 21627 7 Gut 0.78 protein_coding synonymous_variant LOW 1629G>A Lys543Lys
M0208169 FGJCMKOL_00031 21636 7 Gut 0.78 protein_coding synonymous_variant LOW 1620G>A Thr540Thr
M0208170 FGJCMKOL_00031 21651 7 Gut 0.78 protein_coding synonymous_variant LOW 1605T>A Ala535Ala
M0208171 FGJCMKOL_00031 21657 7 Gut 0.78 protein_coding synonymous_variant LOW 1599A>C Thr533Thr
M0208172 FGJCMKOL_00031 21660 7 Gut 0.78 protein_coding synonymous_variant LOW 1596G>T Ala532Ala
M0208173 FGJCMKOL_00031 21675 7 Gut 0.78 protein_coding synonymous_variant LOW 1581T>C Gly527Gly
M0208174 FGJCMKOL_00031 21678 7 Gut 0.78 protein_coding synonymous_variant LOW 1578C>T Gly526Gly
M0208175 FGJCMKOL_00031 21711 7 Gut 0.78 protein_coding synonymous_variant LOW 1545G>A Lys515Lys
M0208176 FGJCMKOL_00031 21716 7 Gut 0.78 protein_coding synonymous_variant LOW 1540T>C Leu514Leu
M0208177 FGJCMKOL_00031 21723 7 Gut 0.78 protein_coding synonymous_variant LOW 1533A>G Lys511Lys
M0208178 FGJCMKOL_00031 21735 7 Gut 0.78 protein_coding synonymous_variant LOW 1521T>C Asp507Asp
M0208179 FGJCMKOL_00031 21756 7 Gut 0.78 protein_coding synonymous_variant LOW 1500T>C Arg500Arg
M0208180 FGJCMKOL_00031 21780 7 Gut 0.78 protein_coding synonymous_variant LOW 1476T>C Ala492Ala
M0208181 FGJCMKOL_00031 21789 7 Gut 0.78 protein_coding synonymous_variant LOW 1467C>T Phe489Phe
M0208182 FGJCMKOL_00031 21795 7 Gut 0.78 protein_coding synonymous_variant LOW 1461G>A Pro487Pro
M0208183 FGJCMKOL_00031 21825 7 Gut 0.78 protein_coding synonymous_variant LOW 1431T>C Val477Val
M0208184 FGJCMKOL_00031 21843 7 Gut 0.78 protein_coding synonymous_variant LOW 1413G>T Leu471Leu
M0208185 FGJCMKOL_00031 21855 7 Gut 0.78 protein_coding synonymous_variant LOW 1401T>A Thr467Thr
M0208186 FGJCMKOL_00031 21913 7 Gut 0.78 protein_coding missense_variant MODERATE 1343T>A Val448Glu
M0208187 FGJCMKOL_00031 21957 7 Gut 0.78 protein_coding synonymous_variant LOW 1299A>T Thr433Thr
M0208188 FGJCMKOL_00031 22123 7 Gut 0.78 protein_coding missense_variant MODERATE 1133T>C Val378Ala
M0208189 FGJCMKOL_00031 22137 7 Gut 0.78 protein_coding synonymous_variant LOW 1119T>A Ala373Ala
M0208190 FGJCMKOL_00031 22159 7 Gut 0.78 protein_coding missense_variant MODERATE 1097A>C Glu366Ala
M0208191 FGJCMKOL_00031 22341 7 Gut 0.78 protein_coding synonymous_variant LOW 915G>A Thr305Thr
M0208192 FGJCMKOL_00031 22389 7 Gut 0.78 protein_coding synonymous_variant LOW 867G>A Arg289Arg
M0208193 FGJCMKOL_00031 22413 7 Gut 0.78 protein_coding synonymous_variant LOW 843G>A Ala281Ala
M0208194 FGJCMKOL_00031 22521 7 Gut 0.78 protein_coding synonymous_variant LOW 735A>C Thr245Thr
M0208195 FGJCMKOL_00031 22575 7 Gut 0.78 protein_coding synonymous_variant LOW 681A>T Arg227Arg
M0208196 FGJCMKOL_00031 22662 7 Gut 0.78 protein_coding synonymous_variant LOW 594C>A Pro198Pro
M0208197 FGJCMKOL_00031 22665 7 Gut 0.78 protein_coding synonymous_variant LOW 591G>T Thr197Thr
M0208198 FGJCMKOL_00031 22692 7 Gut 0.78 protein_coding synonymous_variant LOW 564C>T Gly188Gly
M0208199 FGJCMKOL_00031 22716 7 Gut 0.78 protein_coding synonymous_variant LOW 540T>G Pro180Pro
M0208200 FGJCMKOL_00031 22746 7 Gut 0.78 protein_coding synonymous_variant LOW 510A>C Gly170Gly
M0208201 FGJCMKOL_00031 22761 7 Gut 0.78 protein_coding synonymous_variant LOW 495C>T Ala165Ala
M0208202 FGJCMKOL_00031 22863 7 Gut 0.78 protein_coding synonymous_variant LOW 393A>T Ile131Ile
M0208203 FGJCMKOL_00031 22889 7 Gut 0.78 protein_coding missense_variant MODERATE 367G>A Ala123Thr
M0208204 FGJCMKOL_00031 23018 7 Gut 0.78 protein_coding missense_variant MODERATE 238G>T Ala80Ser
M0208205 FGJCMKOL_00031 23112 7 Gut 0.78 protein_coding synonymous_variant LOW 144A>G Gln48Gln
M0208206 FGJCMKOL_00032 23274 7 Gut 0.78 protein_coding missense_variant MODERATE 562A>C Lys188Gln
M0208207 FGJCMKOL_00032 23485 7 Gut 0.78 protein_coding synonymous_variant LOW 351C>T Cys117Cys
M0208208 FGJCMKOL_00033 23881 7 Gut 0.78 protein_coding missense_variant MODERATE 1221G>T Lys407Asn
M0208209 FGJCMKOL_00034 25283 7 Gut 0.78 protein_coding missense_variant MODERATE 410T>C Leu137Ser
M0208210 FGJCMKOL_00039 28694 7 Gut 0.78 protein_coding synonymous_variant LOW 1305A>C Gly435Gly
M0208211 FGJCMKOL_00041 31214 7 Gut 0.78 protein_coding synonymous_variant LOW 1026C>T Ser342Ser
M0208212 FGJCMKOL_00041 31226 7 Gut 0.78 protein_coding synonymous_variant LOW 1014C>T Asn338Asn
M0208213 FGJCMKOL_00041 31232 7 Gut 0.78 protein_coding synonymous_variant LOW 1008A>T Ala336Ala
M0208214 FGJCMKOL_00041 31247 7 Gut 0.78 protein_coding synonymous_variant LOW 993C>G Ala331Ala
M0208215 FGJCMKOL_00041 31325 7 Gut 0.78 protein_coding synonymous_variant LOW 915T>A Ser305Ser
M0208216 FGJCMKOL_00041 31373 7 Gut 0.78 protein_coding synonymous_variant LOW 867C>A Pro289Pro
M0208217 FGJCMKOL_00041 31775 7 Gut 0.78 protein_coding synonymous_variant LOW 465G>A Gln155Gln
M0208218 FGJCMKOL_00041 31796 7 Gut 0.78 protein_coding synonymous_variant LOW 444T>C Asp148Asp
M0208219 FGJCMKOL_00042 32309 7 Gut 0.78 protein_coding missense_variant MODERATE 857T>A Leu286Gln
M0208220 FGJCMKOL_00042 32378 7 Gut 0.78 protein_coding missense_variant MODERATE 788C>T Ala263Val
M0208221 FGJCMKOL_00042 32468 7 Gut 0.78 protein_coding missense_variant MODERATE 698C>A Pro233Gln
M0208222 FGJCMKOL_00042 32848 7 Gut 0.78 protein_coding synonymous_variant LOW 318C>T Asn106Asn
M0208223 FGJCMKOL_00042 32858 7 Gut 0.78 protein_coding missense_variant MODERATE 308C>A Ala103Glu
M0208224 FGJCMKOL_00042 32884 7 Gut 0.78 protein_coding synonymous_variant LOW 282A>G Gln94Gln
M0208225 FGJCMKOL_00042 32956 7 Gut 0.78 protein_coding synonymous_variant LOW 210C>T Thr70Thr
M0208226 FGJCMKOL_00042 33058 7 Gut 0.78 protein_coding synonymous_variant LOW 108A>C Ile36Ile
M0208227 FGJCMKOL_00042 33108 7 Gut 0.78 protein_coding missense_variant MODERATE 58A>C Asn20His
M0208228 FGJCMKOL_00043 33242 7 Gut 0.78 protein_coding synonymous_variant LOW 642A>G Ser214Ser
M0208229 FGJCMKOL_00043 33374 7 Gut 0.78 protein_coding synonymous_variant LOW 510G>A Thr170Thr
M0208230 FGJCMKOL_00043 33376 7 Gut 0.78 protein_coding missense_variant MODERATE 508A>G Thr170Ala
M0208231 FGJCMKOL_00043 33493 7 Gut 0.78 protein_coding missense_variant MODERATE 391G>A Ala131Thr
M0208232 FGJCMKOL_00043 33517 7 Gut 0.78 protein_coding missense_variant MODERATE 367A>G Thr123Ala
M0208233 FGJCMKOL_00043 33548 7 Gut 0.78 protein_coding synonymous_variant LOW 336C>T Phe112Phe
M0208234 FGJCMKOL_00043 33598 7 Gut 0.78 protein_coding synonymous_variant LOW 286C>A Arg96Arg
M0208235 FGJCMKOL_00043 33638 7 Gut 0.78 protein_coding synonymous_variant LOW 246T>C Ser82Ser
M0208236 FGJCMKOL_00043 33695 7 Gut 0.78 protein_coding synonymous_variant LOW 189A>G Thr63Thr
M0208237 FGJCMKOL_00043 33809 7 Gut 0.78 protein_coding synonymous_variant LOW 75T>C Asn25Asn
M0208238 FGJCMKOL_00039 33978 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3980C>T None
M0208239 FGJCMKOL_00045 35438 7 Gut 0.78 protein_coding missense_variant MODERATE 61A>T Ile21Phe
M0208240 FGJCMKOL_00047 36337 7 Gut 0.78 protein_coding missense_variant MODERATE 2685T>A Asp895Glu
M0208241 FGJCMKOL_00047 36481 7 Gut 0.78 protein_coding synonymous_variant LOW 2541C>T Ser847Ser
M0208242 FGJCMKOL_00047 36778 7 Gut 0.78 protein_coding synonymous_variant LOW 2244T>C Ala748Ala
M0208243 FGJCMKOL_00047 37180 7 Gut 0.78 protein_coding synonymous_variant LOW 1842C>T Pro614Pro
M0208244 FGJCMKOL_00047 37495 7 Gut 0.78 protein_coding synonymous_variant LOW 1527T>C Leu509Leu
M0208245 FGJCMKOL_00047 37570 7 Gut 0.78 protein_coding synonymous_variant LOW 1452T>C Ala484Ala
M0208246 FGJCMKOL_00047 37630 7 Gut 0.78 protein_coding synonymous_variant LOW 1392G>A Gln464Gln
M0208247 FGJCMKOL_00047 37648 7 Gut 0.78 protein_coding synonymous_variant LOW 1374C>T Gly458Gly
M0208248 FGJCMKOL_00047 37717 7 Gut 0.78 protein_coding synonymous_variant LOW 1305C>T Asp435Asp
M0208249 FGJCMKOL_00047 37759 7 Gut 0.78 protein_coding synonymous_variant LOW 1263C>T Thr421Thr
M0208250 FGJCMKOL_00047 37852 7 Gut 0.78 protein_coding synonymous_variant LOW 1170G>A Thr390Thr
M0208251 FGJCMKOL_00047 38011 7 Gut 0.78 protein_coding synonymous_variant LOW 1011T>C Cys337Cys
M0208252 FGJCMKOL_00047 38074 7 Gut 0.78 protein_coding synonymous_variant LOW 948T>C Asp316Asp
M0208253 FGJCMKOL_00047 38269 7 Gut 0.78 protein_coding synonymous_variant LOW 753A>T Val251Val
M0208254 FGJCMKOL_00047 38304 7 Gut 0.78 protein_coding missense_variant MODERATE 718G>A Gly240Ser
M0208255 FGJCMKOL_00047 38305 7 Gut 0.78 protein_coding synonymous_variant LOW 717A>C Arg239Arg
M0208256 FGJCMKOL_00047 38320 7 Gut 0.78 protein_coding synonymous_variant LOW 702G>A Thr234Thr
M0208257 FGJCMKOL_00047 38468 7 Gut 0.78 protein_coding missense_variant MODERATE 554A>G Asp185Gly
M0208258 FGJCMKOL_00047 38539 7 Gut 0.78 protein_coding synonymous_variant LOW 483C>T Leu161Leu
M0208259 FGJCMKOL_00047 38632 7 Gut 0.78 protein_coding synonymous_variant LOW 390G>A Thr130Thr
M0208260 FGJCMKOL_00047 38644 7 Gut 0.78 protein_coding synonymous_variant LOW 378C>T Asn126Asn
M0208261 FGJCMKOL_00047 38647 7 Gut 0.78 protein_coding synonymous_variant LOW 375C>T Asp125Asp
M0208262 FGJCMKOL_00047 38742 7 Gut 0.78 protein_coding missense_variant MODERATE 280G>A Asp94Asn
M0208263 FGJCMKOL_00047 38758 7 Gut 0.78 protein_coding synonymous_variant LOW 264T>C Tyr88Tyr
M0208264 FGJCMKOL_00047 38793 7 Gut 0.78 protein_coding missense_variant MODERATE 229T>C Ser77Pro
M0208265 FGJCMKOL_00047 38887 7 Gut 0.78 protein_coding synonymous_variant LOW 135T>C Leu45Leu
M0208266 FGJCMKOL_00048 39070 7 Gut 0.78 protein_coding synonymous_variant LOW 267T>C Val89Val
M0208267 FGJCMKOL_00049 39452 7 Gut 0.78 protein_coding synonymous_variant LOW 510C>T Pro170Pro
M0208268 FGJCMKOL_00049 39465 7 Gut 0.78 protein_coding missense_variant MODERATE 497T>G Ile166Ser
M0208269 FGJCMKOL_00049 39677 7 Gut 0.78 protein_coding synonymous_variant LOW 285C>T Gly95Gly
M0208270 FGJCMKOL_00049 39680 7 Gut 0.78 protein_coding synonymous_variant LOW 282C>T Phe94Phe
M0208271 FGJCMKOL_00049 39701 7 Gut 0.78 protein_coding synonymous_variant LOW 261A>G Thr87Thr
M0208272 FGJCMKOL_00049 39785 7 Gut 0.78 protein_coding synonymous_variant LOW 177A>T Pro59Pro
M0208273 FGJCMKOL_00049 39851 7 Gut 0.78 protein_coding synonymous_variant LOW 111A>G Ala37Ala
M0208274 FGJCMKOL_00046 40771 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4514T>C None
M0208275 FGJCMKOL_00046 40772 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4515C>T None
M0208276 FGJCMKOL_00046 40782 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4525A>T None
M0208277 FGJCMKOL_00046 40842 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4585G>A None
M0208278 FGJCMKOL_00046 40843 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4586T>C None
M0208279 FGJCMKOL_00046 40849 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4592A>C None
M0208280 FGJCMKOL_00046 40853 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4596A>G None
M0208281 FGJCMKOL_00046 40854 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4597C>T None
M0208282 FGJCMKOL_00046 40870 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4613T>G None
M0208283 FGJCMKOL_00046 40946 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4689G>A None
M0208284 FGJCMKOL_00046 40957 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4700A>C None
M0208285 FGJCMKOL_00046 40960 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4703G>T None
M0208286 FGJCMKOL_00046 40961 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4704T>C None
M0208287 FGJCMKOL_00046 40976 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4719C>A None
M0208288 FGJCMKOL_00046 40985 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4728A>G None
M0208289 FGJCMKOL_00046 40986 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4729A>C None
M0208290 FGJCMKOL_00046 40998 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4741A>G None
M0208291 FGJCMKOL_00046 41006 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -4749G>T None
M0208292 FGJCMKOL_00051 41013 7 Gut 0.78 protein_coding synonymous_variant LOW 1161T>C Ser387Ser
M0208293 FGJCMKOL_00051 41015 7 Gut 0.78 protein_coding missense_variant MODERATE 1159A>G Ser387Gly
M0208294 FGJCMKOL_00051 41022 7 Gut 0.78 protein_coding synonymous_variant LOW 1152G>A Lys384Lys
M0208295 FGJCMKOL_00051 41142 7 Gut 0.78 protein_coding synonymous_variant LOW 1032C>T Ser344Ser
M0208296 FGJCMKOL_00051 41235 7 Gut 0.78 protein_coding synonymous_variant LOW 939C>T Asn313Asn
M0208297 FGJCMKOL_00051 41433 7 Gut 0.78 protein_coding synonymous_variant LOW 741C>T Tyr247Tyr
M0208298 FGJCMKOL_00051 41441 7 Gut 0.78 protein_coding missense_variant MODERATE 733G>A Val245Ile
M0208299 FGJCMKOL_00051 41613 7 Gut 0.78 protein_coding synonymous_variant LOW 561C>T Asp187Asp
M0208300 FGJCMKOL_00051 41679 7 Gut 0.78 protein_coding synonymous_variant LOW 495C>T Asp165Asp
M0208301 FGJCMKOL_00051 41685 7 Gut 0.78 protein_coding synonymous_variant LOW 489T>C His163His
M0208302 FGJCMKOL_00051 41688 7 Gut 0.78 protein_coding synonymous_variant LOW 486T>C Tyr162Tyr
M0208303 FGJCMKOL_00051 41763 7 Gut 0.78 protein_coding synonymous_variant LOW 411A>G Lys137Lys
M0208304 FGJCMKOL_00051 41847 7 Gut 0.78 protein_coding synonymous_variant LOW 327A>G Gln109Gln
M0208305 FGJCMKOL_00051 41877 7 Gut 0.78 protein_coding missense_variant MODERATE 297T>G Asp99Glu
M0208306 FGJCMKOL_00051 41886 7 Gut 0.78 protein_coding synonymous_variant LOW 288G>A Glu96Glu
M0208307 FGJCMKOL_00051 41993 7 Gut 0.78 protein_coding missense_variant MODERATE 181G>A Val61Ile
M0208308 FGJCMKOL_00051 42096 7 Gut 0.78 protein_coding synonymous_variant LOW 78T>C His26His
M0208309 FGJCMKOL_00051 42149 7 Gut 0.78 protein_coding missense_variant MODERATE 25T>C Tyr9His
M0208310 FGJCMKOL_00052 42388 7 Gut 0.78 protein_coding synonymous_variant LOW 334T>C Leu112Leu
M0208311 FGJCMKOL_00052 42576 7 Gut 0.78 protein_coding missense_variant MODERATE 146G>T Gly49Val
M0208312 FGJCMKOL_00052 42605 7 Gut 0.78 protein_coding synonymous_variant LOW 117G>A Leu39Leu
M0208313 FGJCMKOL_00052 42647 7 Gut 0.78 protein_coding synonymous_variant LOW 75A>G Pro25Pro
M0208314 FGJCMKOL_00047 42763 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3742G>A None
M0208315 FGJCMKOL_00047 42824 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3803C>T None
M0208316 FGJCMKOL_00047 42832 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3811T>C None
M0208317 FGJCMKOL_00047 42878 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3857G>A None
M0208318 FGJCMKOL_00047 42904 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3883C>T None
M0208319 FGJCMKOL_00060 45354 7 Gut 0.78 protein_coding synonymous_variant LOW 87G>A Lys29Lys
M0208320 FGJCMKOL_00060 45414 7 Gut 0.78 protein_coding synonymous_variant LOW 27C>T Arg9Arg
M0208321 FGJCMKOL_00051 45685 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3512A>G None
M0208322 FGJCMKOL_00051 45699 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3526A>G None
M0208323 FGJCMKOL_00051 45725 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3552A>G None
M0208324 FGJCMKOL_00051 45742 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3569C>T None
M0208325 FGJCMKOL_00051 45771 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3598C>T None
M0208326 FGJCMKOL_00051 45840 7 Gut 0.78 protein_coding upstream_gene_variant MODIFIER -3667T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
FGJCMKOL_00013 Arsenic (As) 71.2 1.9e-87 9 248 0.9804 0.9881 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
FGJCMKOL_00019 ARO:3000412 100 1.64e-185 18 288 0.9410 1.0000 sulfonamide antibiotic sulfonamide resistant sul antibiotic target replacement






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FGJCMKOL_00049 AEA95649.1|GH23 100 1.85e-153 1 215 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term