Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1372
  Reference Plasmid   NZ_MG591698.1
  Reference Plasmid Size   353691
  Reference Plasmid GC Content   0.51
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0208484 CIPKABJF_00137 143380 3 Gut 0.10 protein_coding synonymous_variant LOW 75T>C Ser25Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
DPJHJNMP_00083 VFG000331 LOS 71 1.1e-191 7 472 0.9769 0.979 Immune modulation ADP-heptose synthase experiment
DPJHJNMP_00180 VFG034648 Adhesive fimbriae 100 7.8e-219 1 362 1.0 1 Adherence minor pilin and initiator experiment
DPJHJNMP_00181 VFG034636 Adhesive fimbriae 100 0 1 894 1.0 1 Adherence colonisation factor antigen c, usher experiment
DPJHJNMP_00182 VFG034624 Adhesive fimbriae 100 6.8e-85 1 166 1.0 1 Adherence colonization factor antigen 1 experiment
DPJHJNMP_00183 VFG034612 Adhesive fimbriae 99.6 8.1e-132 1 238 1.0 1 Adherence colonisation factor antigen a, chaperone experiment
CIPKABJF_00083 VFG000331 LOS 71 1.1e-191 7 472 0.9769 0.979 Immune modulation ADP-heptose synthase experiment
CIPKABJF_00180 VFG034648 Adhesive fimbriae 100 7.8e-219 1 362 1.0 1 Adherence minor pilin and initiator experiment
CIPKABJF_00181 VFG034636 Adhesive fimbriae 100 0 1 894 1.0 1 Adherence colonisation factor antigen c, usher experiment
CIPKABJF_00182 VFG034624 Adhesive fimbriae 100 6.8e-85 1 166 1.0 1 Adherence colonization factor antigen 1 experiment
CIPKABJF_00183 VFG034612 Adhesive fimbriae 99.6 8.1e-132 1 238 1.0 1 Adherence colonisation factor antigen a, chaperone experiment
DPJHJNMP_00066 VFG044140 HasA-type hemophore-mediated heme uptake system 74.1 1.3e-183 1 462 0.9371 0.9935 Nutritional/Metabolic factor outer membrane channel protein TolC prediction
DPJHJNMP_00083 VFG000331 LOS 71 8e-191 7 472 0.9769 0.979 Immune modulation ADP-heptose synthase prediction
DPJHJNMP_00110 VFG045826 Cah, AIDA-I type 97.2 0 1 948 1.0 1 Biofilm calcium-binding autotransporter Cah prediction
DPJHJNMP_00180 VFG034648 Adhesive fimbriae 100 5.8e-218 1 362 1.0 1 Adherence minor pilin and initiator prediction
DPJHJNMP_00181 VFG034636 Adhesive fimbriae 100 0 1 894 1.0 1 Adherence colonisation factor antigen c, usher prediction
DPJHJNMP_00182 VFG034624 Adhesive fimbriae 100 5.1e-84 1 166 1.0 1 Adherence colonization factor antigen 1 prediction
DPJHJNMP_00183 VFG034605 Adhesive fimbriae 100 2.1e-131 1 238 1.0 1 Adherence colonisation factor antigen a, chaperone prediction
DPJHJNMP_00257 VFG013514 Exopolysaccharide 73.3 1.6e-188 1 445 1.0 1 Immune modulation phosphoglucosamine mutase prediction
CIPKABJF_00066 VFG044140 HasA-type hemophore-mediated heme uptake system 74.1 1.3e-183 1 462 0.9371 0.9935 Nutritional/Metabolic factor outer membrane channel protein TolC prediction
CIPKABJF_00083 VFG000331 LOS 71 8e-191 7 472 0.9769 0.979 Immune modulation ADP-heptose synthase prediction
CIPKABJF_00110 VFG045826 Cah, AIDA-I type 97.2 0 1 948 1.0 1 Biofilm calcium-binding autotransporter Cah prediction
CIPKABJF_00180 VFG034648 Adhesive fimbriae 100 5.8e-218 1 362 1.0 1 Adherence minor pilin and initiator prediction
CIPKABJF_00181 VFG034636 Adhesive fimbriae 100 0 1 894 1.0 1 Adherence colonisation factor antigen c, usher prediction
CIPKABJF_00182 VFG034624 Adhesive fimbriae 100 5.1e-84 1 166 1.0 1 Adherence colonization factor antigen 1 prediction
CIPKABJF_00183 VFG034605 Adhesive fimbriae 100 2.1e-131 1 238 1.0 1 Adherence colonisation factor antigen a, chaperone prediction
CIPKABJF_00257 VFG013514 Exopolysaccharide 73.3 1.6e-188 1 445 1.0 1 Immune modulation phosphoglucosamine mutase prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
DPJHJNMP_00021 Zinc (Zn), Tellurium (Te) 81 4.9e-227 1 499 1.0000 1.0000 experiment
DPJHJNMP_00054 Cadmium (Cd), Tributyltin (TBT) [class: Organo-tin], Hydrogen Peroxide (H2O2) [class: Peroxides] 100 3.8e-70 1 130 1.0000 1.0000 experiment
DPJHJNMP_00066 Phenol [class: Phenolic compounds], Triclosan [class: Phenolic compounds], Sodium Deoxycholate (SDC) [class: Acid], Sodium Cholate [class: Acid], Sodium Taurodeoxycholate [class: Acid], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Proflavin [class: Acridine], Acriflavine [class: Acridine], Ethidium Bromide [class: Phenanthridine], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Rhodamine 6G [class: Xanthene], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Plumbagin [class: Naphthoquinone] 100 9.3e-271 1 493 1.0000 1.0000 experiment
DPJHJNMP_00070 Zinc (Zn), Iron (Fe), Cobalt (Co), Nickel (Ni), Copper (Cu), Cadmium (Cd) 99.6 1.3e-135 1 257 1.0000 1.0000 experiment
DPJHJNMP_00158 Iron (Fe), Nickel (Ni) 97.6 2.1e-149 1 254 1.0000 1.0000 experiment
DPJHJNMP_00313 Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid] 98.9 1.9e-41 1 87 1.0000 1.0000 experiment
CIPKABJF_00021 Zinc (Zn), Tellurium (Te) 81 4.9e-227 1 499 1.0000 1.0000 experiment
CIPKABJF_00054 Cadmium (Cd), Tributyltin (TBT) [class: Organo-tin], Hydrogen Peroxide (H2O2) [class: Peroxides] 100 3.8e-70 1 130 1.0000 1.0000 experiment
CIPKABJF_00066 Phenol [class: Phenolic compounds], Triclosan [class: Phenolic compounds], Sodium Deoxycholate (SDC) [class: Acid], Sodium Cholate [class: Acid], Sodium Taurodeoxycholate [class: Acid], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Proflavin [class: Acridine], Acriflavine [class: Acridine], Ethidium Bromide [class: Phenanthridine], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Rhodamine 6G [class: Xanthene], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Plumbagin [class: Naphthoquinone] 100 9.3e-271 1 493 1.0000 1.0000 experiment
CIPKABJF_00070 Zinc (Zn), Iron (Fe), Cobalt (Co), Nickel (Ni), Copper (Cu), Cadmium (Cd) 99.6 1.3e-135 1 257 1.0000 1.0000 experiment
CIPKABJF_00158 Iron (Fe), Nickel (Ni) 97.6 2.1e-149 1 254 1.0000 1.0000 experiment
CIPKABJF_00313 Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid] 98.9 1.9e-41 1 87 1.0000 1.0000 experiment
DPJHJNMP_00021 Zinc (Zn), Tellurium (Te) 99.8 1.2e-274 1 499 1.0000 1.0000 prediction
DPJHJNMP_00054 Cadmium (Cd), Tributyltin (TBT) [class: Organo-tin], Hydrogen Peroxide (H2O2) [class: Peroxides] 100 8.6e-68 1 130 1.0000 0.8725 prediction
DPJHJNMP_00066 Phenol [class: Phenolic compounds], Triclosan [class: Phenolic compounds], Sodium Deoxycholate (SDC) [class: Acid], Sodium Cholate [class: Acid], Sodium Taurodeoxycholate [class: Acid], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Proflavin [class: Acridine], Acriflavine [class: Acridine], Ethidium Bromide [class: Phenanthridine], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Rhodamine 6G [class: Xanthene], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Plumbagin [class: Naphthoquinone] 100 2.1e-268 1 493 1.0000 1.0000 prediction
DPJHJNMP_00070 Zinc (Zn), Iron (Fe), Cobalt (Co), Nickel (Ni), Copper (Cu), Cadmium (Cd) 100 1e-133 1 257 1.0000 0.9483 prediction
DPJHJNMP_00158 Iron (Fe), Nickel (Ni) 100 5.5e-151 1 254 1.0000 1.0000 prediction
DPJHJNMP_00313 Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid] 100 1.9e-39 1 87 1.0000 0.9457 prediction
CIPKABJF_00021 Zinc (Zn), Tellurium (Te) 99.8 1.2e-274 1 499 1.0000 1.0000 prediction
CIPKABJF_00054 Cadmium (Cd), Tributyltin (TBT) [class: Organo-tin], Hydrogen Peroxide (H2O2) [class: Peroxides] 100 8.6e-68 1 130 1.0000 0.8725 prediction
CIPKABJF_00066 Phenol [class: Phenolic compounds], Triclosan [class: Phenolic compounds], Sodium Deoxycholate (SDC) [class: Acid], Sodium Cholate [class: Acid], Sodium Taurodeoxycholate [class: Acid], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Proflavin [class: Acridine], Acriflavine [class: Acridine], Ethidium Bromide [class: Phenanthridine], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Rhodamine 6G [class: Xanthene], Tetraphenylarsonium (TPA) [class: Quaternary Ammonium Compounds (QACs)], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Plumbagin [class: Naphthoquinone] 100 2.1e-268 1 493 1.0000 1.0000 prediction
CIPKABJF_00070 Zinc (Zn), Iron (Fe), Cobalt (Co), Nickel (Ni), Copper (Cu), Cadmium (Cd) 100 1e-133 1 257 1.0000 0.9483 prediction
CIPKABJF_00158 Iron (Fe), Nickel (Ni) 100 5.5e-151 1 254 1.0000 1.0000 prediction
CIPKABJF_00313 Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid] 100 1.9e-39 1 87 1.0000 0.9457 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
DPJHJNMP_00049 ARO:3003308 99.9 0 1 752 1.0000 1.0000 fluoroquinolone antibiotic fluoroquinolone resistant parC antibiotic target alteration
DPJHJNMP_00061 ARO:3003316 99.8 0 1 630 1.0000 1.0000 fluoroquinolone antibiotic fluoroquinolone resistant parE antibiotic target alteration
DPJHJNMP_00066 ARO:3000237 100 0 1 493 1.0000 0.9960 macrolide antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic efflux
DPJHJNMP_00088 ARO:3002986 99.6 1.34e-192 1 273 1.0000 1.0000 peptide antibiotic undecaprenyl pyrophosphate related proteins antibiotic target alteration
DPJHJNMP_00116 ARO:3003689 100 0 1 541 1.0000 1.0000 peptide antibiotic MCR phosphoethanolamine transferase antibiotic target alteration
DPJHJNMP_00258 ARO:3003386 100 3.31e-202 1 282 1.0000 1.0000 sulfonamide antibiotic sulfonamide resistant dihydropteroate synthase folP antibiotic target alteration
DPJHJNMP_00270 ARO:3003775 100 1.29e-300 1 419 1.0000 1.0000 phosphonic acid antibiotic antibiotic-resistant murA transferase antibiotic target alteration
DPJHJNMP_00274 ARO:3005042 99.5 9.36e-128 1 183 1.0000 1.0000 oxazolidinone antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic efflux
DPJHJNMP_00276 ARO:3005041 100 1.45e-194 1 269 1.0000 1.0000 oxazolidinone antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic efflux
CIPKABJF_00049 ARO:3003308 99.9 0 1 752 1.0000 1.0000 fluoroquinolone antibiotic fluoroquinolone resistant parC antibiotic target alteration
CIPKABJF_00061 ARO:3003316 99.8 0 1 630 1.0000 1.0000 fluoroquinolone antibiotic fluoroquinolone resistant parE antibiotic target alteration
CIPKABJF_00066 ARO:3000237 100 0 1 493 1.0000 0.9960 macrolide antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic efflux
CIPKABJF_00088 ARO:3002986 99.6 1.34e-192 1 273 1.0000 1.0000 peptide antibiotic undecaprenyl pyrophosphate related proteins antibiotic target alteration
CIPKABJF_00116 ARO:3003689 100 0 1 541 1.0000 1.0000 peptide antibiotic MCR phosphoethanolamine transferase antibiotic target alteration
CIPKABJF_00258 ARO:3003386 100 3.31e-202 1 282 1.0000 1.0000 sulfonamide antibiotic sulfonamide resistant dihydropteroate synthase folP antibiotic target alteration
CIPKABJF_00270 ARO:3003775 100 1.29e-300 1 419 1.0000 1.0000 phosphonic acid antibiotic antibiotic-resistant murA transferase antibiotic target alteration
CIPKABJF_00274 ARO:3005042 99.5 9.36e-128 1 183 1.0000 1.0000 oxazolidinone antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic efflux
CIPKABJF_00276 ARO:3005041 100 1.45e-194 1 269 1.0000 1.0000 oxazolidinone antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic efflux






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
DPJHJNMP_00030 PHI:10995 hybA 100 9.9e-204 1 328 1.0000 1.0000 rodents infection hydrogenase-2 operon protein unaffected pathogenicity
DPJHJNMP_00031 PHI:10996 hybO 100 1.1e-222 1 372 1.0000 1.0000 rodents infection hydrogenase-2 small chain unaffected pathogenicity
DPJHJNMP_00047 PHI:10978 sufI 100 9e-283 1 470 1.0000 1.0000 rodents infection cell division protein reduced virulence
DPJHJNMP_00055 PHI:6882 QseB 87.6 1.9e-110 1 218 0.9954 0.9954 primates salmonellosis two-component system response regulator increased virulence (hypervirulence)
DPJHJNMP_00056 PHI:12147 qseC 98.9 8.7e-251 1 449 1.0000 1.0000 primates infection two-component regulatory system protein unaffected pathogenicity
DPJHJNMP_00066 PHI:123409 tolC 100 1.6e-269 1 493 1.0000 0.9960 rodents infection tolerant colicin reduced virulence
DPJHJNMP_00067 PHI:124003 ygiB 94.2 1.2e-115 1 223 1.0000 1.0000 rodents colitis cpx-regulated gene unaffected pathogenicity
DPJHJNMP_00073 PHI:6697 yqiC 84 2e-35 1 94 0.9792 0.9394 primates salmonellosis membrane fusogenic activity reduced virulence
DPJHJNMP_00083 PHI:3147 rfaE 70.4 3.5e-189 6 472 0.9790 0.9832 even-toed ungulates Glasser's disease part of cluster invloved in lipooligosaccharide synthesis reduced virulence
DPJHJNMP_00116 PHI:11668 mcr-1 100 8.89999999982676e-314 1 541 1.0000 1.0000 moths infection probable phosphatidylethanolamine transferase increased virulence (hypervirulence)
DPJHJNMP_00160 PHI:6979 aer 83 1.8e-228 1 506 1.0000 1.0000 primates salmonellosis methyl-accepting chemotaxis protein reduced virulence
DPJHJNMP_00185 PHI:11405 dedA 92.3 6.4e-114 1 220 1.0000 1.0000 rodents pneumonia DedA family inner membrane protein reduced virulence
DPJHJNMP_00238 PHI:11411 yhbU 97.9 1.7e-190 1 331 1.0000 1.0000 rodents pneumonia ubiquinone biosynthesis protein unaffected pathogenicity
DPJHJNMP_00243 PHI:2459 nlpI 88.4 9.7e-150 1 294 1.0000 1.0000 eudicots fire blight tetratricopeptide lipoprotein reduced virulence
DPJHJNMP_00244 PHI:3878 pnp 97.2 0 1 711 1.0000 1.0000 even-toed ungulates food poisoning polynucleotide phosphorylase, an exoribonuclease involved in RNA processing and degradation reduced virulence
DPJHJNMP_00262 PHI:7130 greA 96.8 1.6e-82 1 158 1.0000 1.0000 rodents salmonellosis transcription elongation factor loss of pathogenicity
DPJHJNMP_00283 PHI:2906 rpoN 83.6 5.1e-225 1 477 1.0000 1.0000 eudicots fire blight sigma factor, regulating essential virulence gene expression loss of pathogenicity
DPJHJNMP_00284 PHI:3674 yhbH 82.1 4.5e-40 1 95 1.0000 1.0000 eudicots fire blight a novel ribosome-associated modulation protein loss of pathogenicity
DPJHJNMP_00285 PHI:3133 ptsN 86.2 6.1e-69 4 155 0.9325 0.9500 rodents gut-associated disease; diarrhea; enteritis; colitis part of the pyruvate-tricarboxylic acid cycle node reduced virulence
DPJHJNMP_00291 PHI:124164 ArcB 100 0 1 778 1.0000 1.0000 rodents neonatal meningitis two-component system reduced virulence
DPJHJNMP_00299 PHI:124245 nanT 93.5 1.7e-268 1 496 1.0000 1.0000 rodents None sialic acid transporter reduced virulence
DPJHJNMP_00300 PHI:123867 NAL (LC602499) 83.7 1.7e-138 9 296 0.9697 0.9931 bony fishes gastroenteritis N-acetylneuraminate lyase increased virulence (hypervirulence)
DPJHJNMP_00311 PHI:2959 mdh 83 1.1e-143 1 312 1.0000 1.0000 bony fishes enteric septicemia malate dehydrogenase reduced virulence
DPJHJNMP_00312 PHI:10537 argR 98.1 5.6e-80 1 156 1.0000 1.0000 rodents infection arginine repressor reduced virulence
DPJHJNMP_00319 PHI:124123 tldD 85.4 4.5e-237 1 481 1.0000 1.0000 moths yersiniosis regulatory factor unaffected pathogenicity
DPJHJNMP_00334 PHI:10577 PccS1_001523 98 1.3e-47 1 98 1.0000 1.0000 monocots soft rot transcriptional regulator, Fis family, Fis unaffected pathogenicity
CIPKABJF_00030 PHI:10995 hybA 100 9.9e-204 1 328 1.0000 1.0000 rodents infection hydrogenase-2 operon protein unaffected pathogenicity
CIPKABJF_00031 PHI:10996 hybO 100 1.1e-222 1 372 1.0000 1.0000 rodents infection hydrogenase-2 small chain unaffected pathogenicity
CIPKABJF_00047 PHI:10978 sufI 100 9e-283 1 470 1.0000 1.0000 rodents infection cell division protein reduced virulence
CIPKABJF_00055 PHI:6882 QseB 87.6 1.9e-110 1 218 0.9954 0.9954 primates salmonellosis two-component system response regulator increased virulence (hypervirulence)
CIPKABJF_00056 PHI:12147 qseC 98.9 8.7e-251 1 449 1.0000 1.0000 primates infection two-component regulatory system protein unaffected pathogenicity
CIPKABJF_00066 PHI:123409 tolC 100 1.6e-269 1 493 1.0000 0.9960 rodents infection tolerant colicin reduced virulence
CIPKABJF_00067 PHI:124003 ygiB 94.2 1.2e-115 1 223 1.0000 1.0000 rodents colitis cpx-regulated gene unaffected pathogenicity
CIPKABJF_00073 PHI:6697 yqiC 84 2e-35 1 94 0.9792 0.9394 primates salmonellosis membrane fusogenic activity reduced virulence
CIPKABJF_00083 PHI:3147 rfaE 70.4 3.5e-189 6 472 0.9790 0.9832 even-toed ungulates Glasser's disease part of cluster invloved in lipooligosaccharide synthesis reduced virulence
CIPKABJF_00116 PHI:11668 mcr-1 100 8.89999999982676e-314 1 541 1.0000 1.0000 moths infection probable phosphatidylethanolamine transferase increased virulence (hypervirulence)
CIPKABJF_00160 PHI:6979 aer 83 1.8e-228 1 506 1.0000 1.0000 primates salmonellosis methyl-accepting chemotaxis protein reduced virulence
CIPKABJF_00185 PHI:11405 dedA 92.3 6.4e-114 1 220 1.0000 1.0000 rodents pneumonia DedA family inner membrane protein reduced virulence
CIPKABJF_00238 PHI:11411 yhbU 97.9 1.7e-190 1 331 1.0000 1.0000 rodents pneumonia ubiquinone biosynthesis protein unaffected pathogenicity
CIPKABJF_00243 PHI:2459 nlpI 88.4 9.7e-150 1 294 1.0000 1.0000 eudicots fire blight tetratricopeptide lipoprotein reduced virulence
CIPKABJF_00244 PHI:3878 pnp 97.2 0 1 711 1.0000 1.0000 even-toed ungulates food poisoning polynucleotide phosphorylase, an exoribonuclease involved in RNA processing and degradation reduced virulence
CIPKABJF_00262 PHI:7130 greA 96.8 1.6e-82 1 158 1.0000 1.0000 rodents salmonellosis transcription elongation factor loss of pathogenicity
CIPKABJF_00283 PHI:2906 rpoN 83.6 5.1e-225 1 477 1.0000 1.0000 eudicots fire blight sigma factor, regulating essential virulence gene expression loss of pathogenicity
CIPKABJF_00284 PHI:3674 yhbH 82.1 4.5e-40 1 95 1.0000 1.0000 eudicots fire blight a novel ribosome-associated modulation protein loss of pathogenicity
CIPKABJF_00285 PHI:3133 ptsN 86.2 6.1e-69 4 155 0.9325 0.9500 rodents gut-associated disease; diarrhea; enteritis; colitis part of the pyruvate-tricarboxylic acid cycle node reduced virulence
CIPKABJF_00291 PHI:124164 ArcB 100 0 1 778 1.0000 1.0000 rodents neonatal meningitis two-component system reduced virulence
CIPKABJF_00299 PHI:124245 nanT 93.5 1.7e-268 1 496 1.0000 1.0000 rodents None sialic acid transporter reduced virulence
CIPKABJF_00300 PHI:123867 NAL (LC602499) 83.7 1.7e-138 9 296 0.9697 0.9931 bony fishes gastroenteritis N-acetylneuraminate lyase increased virulence (hypervirulence)
CIPKABJF_00311 PHI:2959 mdh 83 1.1e-143 1 312 1.0000 1.0000 bony fishes enteric septicemia malate dehydrogenase reduced virulence
CIPKABJF_00312 PHI:10537 argR 98.1 5.6e-80 1 156 1.0000 1.0000 rodents infection arginine repressor reduced virulence
CIPKABJF_00319 PHI:124123 tldD 85.4 4.5e-237 1 481 1.0000 1.0000 moths yersiniosis regulatory factor unaffected pathogenicity
CIPKABJF_00334 PHI:10577 PccS1_001523 98 1.3e-47 1 98 1.0000 1.0000 monocots soft rot transcriptional regulator, Fis family, Fis unaffected pathogenicity






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
DPJHJNMP_00133 QJC46236.1|GH32 100 0 1 476 1 1
DPJHJNMP_00135 QEI66307.1|GH36 100 0 1 708 1 1
DPJHJNMP_00141 AUO35651.1|GH42 100 0 1 685 1 1
DPJHJNMP_00142 AXO08421.1|GH53 100 1.46999999999977e-311 1 400 1 1
DPJHJNMP_00164 AUR80358.1|GH2 100 0 1 1030 1 1
DPJHJNMP_00168 QGX82237.1|GH63 100 0 1 783 1 1
DPJHJNMP_00222 AXP25293.1|CE9 100 3.57e-280 1 377 1 1
DPJHJNMP_00289 ALQ71199.1|GT51 100 1.1e-172 1 242 1 1
CIPKABJF_00133 QJC46236.1|GH32 100 0 1 476 1 1
CIPKABJF_00135 QEI66307.1|GH36 100 0 1 708 1 1
CIPKABJF_00141 AUO35651.1|GH42 100 0 1 685 1 1
CIPKABJF_00142 AXO08421.1|GH53 100 1.46999999999977e-311 1 400 1 1
CIPKABJF_00164 AUR80358.1|GH2 100 0 1 1030 1 1
CIPKABJF_00168 QGX82237.1|GH63 100 0 1 783 1 1
CIPKABJF_00222 AXP25293.1|CE9 100 3.57e-280 1 377 1 1
CIPKABJF_00289 ALQ71199.1|GT51 100 1.1e-172 1 242 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
DPJHJNMP_00001 2.A.14.1.2 99.8 4.4e-308 1 560 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.14 The Lactate Permease (LctP) Family
DPJHJNMP_00017 2.A.66.12.6 98.7 5.1e-251 1 449 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.66 The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily
DPJHJNMP_00018 9.B.331.1.1 99.6 1e-139 1 252 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.331 The ATP Binding Protein (ATP-BP) Family
DPJHJNMP_00019 9.B.331.1.2 100 1.7e-133 1 232 1.0000 0.9789 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.331 The ATP Binding Protein (ATP-BP) Family
DPJHJNMP_00020 9.B.331.1.3 100 3.5e-131 1 230 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.331 The ATP Binding Protein (ATP-BP) Family
DPJHJNMP_00021 2.A.20.1.2 99.8 1.9e-275 1 499 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.20 The Inorganic Phosphate Transporter (PiT) Family
DPJHJNMP_00028 3.D.7.2.5 100 0 1 567 1.0000 1.5242 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.7 The H<sub>2</sub>:Heterodisulfide Oxidoreductase (HHO) Family
DPJHJNMP_00029 3.D.7.2.5 100 7.2e-225 1 392 1.0000 1.0538 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.7 The H<sub>2</sub>:Heterodisulfide Oxidoreductase (HHO) Family
DPJHJNMP_00030 3.D.7.2.5 100 2.2e-203 1 328 1.0000 0.8817 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.7 The H<sub>2</sub>:Heterodisulfide Oxidoreductase (HHO) Family
DPJHJNMP_00031 3.D.7.2.5 100 2.4e-222 1 372 1.0000 1.0000 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.7 The H<sub>2</sub>:Heterodisulfide Oxidoreductase (HHO) Family
DPJHJNMP_00037 1.A.30.2.1 100 4.2e-74 1 141 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.30 The H+- or Na+-translocating Bacterial Flagellar Motor/ExbBD Outer Membrane Transport Energizer (Mot/Exb) Superfamily
DPJHJNMP_00038 1.A.30.2.1 100 1.1e-127 1 244 1.0000 1.7305 1 Channels/Pores 1.A α-Type Channels 1.A.30 The H+- or Na+-translocating Bacterial Flagellar Motor/ExbBD Outer Membrane Transport Energizer (Mot/Exb) Superfamily
DPJHJNMP_00040 9.B.27.2.1 100 3.2e-121 1 219 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.27 The Death Effector Domain A (DedA) Family
DPJHJNMP_00050 3.A.1.5.41 99.8 0 1 535 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
DPJHJNMP_00066 1.B.17.1.1 100 3.5e-269 1 493 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.17 The Outer Membrane Factor (OMF) Family
DPJHJNMP_00070 2.A.5.5.1 99.6 5e-134 1 257 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.5 The Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family
DPJHJNMP_00090 9.B.31.1.1 100 1.9e-115 1 205 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.31 The PlsY/YqiH (PlsY) Family
DPJHJNMP_00094 2.A.47.3.3 99.6 8.8e-273 1 487 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.47 The Divalent Anion:Na+ Symporter (DASS) Family
DPJHJNMP_00134 2.A.1.5.2 88.4 4e-205 1 423 0.9953 0.9976 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
DPJHJNMP_00160 9.B.334.1.3 99 9.8e-275 1 506 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.334 The Archael N-terminal Transmembrane Domain Linked to a Sensor Kinase or MCP Domain (N-TM/SK/MCP) Family
DPJHJNMP_00166 2.A.3.7.4 99.6 1.6e-263 1 477 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
DPJHJNMP_00174 2.A.109.1.7 100 5.1e-176 1 321 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.109 The Tellurium Ion Resistance (TerC) Family
DPJHJNMP_00175 2.A.23.1.13 100 2.1e-222 1 414 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.23 The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family
DPJHJNMP_00176 9.B.221.1.1 98.4 5.5e-103 1 183 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.221 The 5 TMS YgjV (YgjV) Family
DPJHJNMP_00179 2.A.1.14.2 99.8 9.9e-244 1 432 1.0000 0.9153 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
DPJHJNMP_00185 9.B.27.2.2 100 1.4e-121 1 220 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.27 The Death Effector Domain A (DedA) Family
DPJHJNMP_00189 1.E.34.2.1 100 1.7e-64 1 134 1.0000 1.0000 1 Channels/Pores 1.E Holins 1.E.34 The Putative Actinobacterial Holin-X (Hol-X) Family
DPJHJNMP_00193 9.B.124.1.2 100 5.7e-72 1 121 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.124 The DUF805 or PF05656 (DUF805) Family
DPJHJNMP_00194 9.B.124.1.1 84.7 3.6e-55 1 118 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.124 The DUF805 or PF05656 (DUF805) Family
DPJHJNMP_00199 2.A.42.2.4 100 7.8e-244 1 443 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.42 The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family
DPJHJNMP_00204 2.A.42.2.2 99.8 1.4e-245 1 443 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.42 The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family
DPJHJNMP_00212 2.A.1.14.14 99.1 1.5e-250 1 444 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
DPJHJNMP_00218 4.A.6.1.4 99.4 9e-86 1 157 1.0000 0.9290 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
DPJHJNMP_00219 4.A.6.1.4 93.8 3.2e-128 1 259 1.0000 1.5325 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
DPJHJNMP_00220 4.A.6.1.4 96.6 1.9e-153 1 292 1.0000 1.7278 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
DPJHJNMP_00226 4.A.6.1.5 99.6 1.2e-143 1 267 1.0000 1.0000 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
DPJHJNMP_00227 4.A.6.1.5 99.6 4.9e-145 1 263 1.0000 0.9850 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
DPJHJNMP_00241 2.A.42.1.2 99.5 4.6e-230 1 414 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.42 The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family
DPJHJNMP_00259 3.A.29.1.5 100 0 4 647 0.9954 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.29 The Mitochondrial Inner Membrane i-AAA Protease Complex (MIMP) Family
DPJHJNMP_00265 2.A.7.3.18 100 2.3e-176 1 321 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.7 The Drug/Metabolite Transporter (DMT) Superfamily
DPJHJNMP_00273 3.A.1.27.3 100 3e-116 1 211 1.0000 0.8406 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
DPJHJNMP_00274 3.A.1.27.3 100 7.5e-100 1 183 1.0000 0.7291 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
DPJHJNMP_00275 3.A.1.27.3 100 1.7e-137 1 260 1.0000 1.0359 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
DPJHJNMP_00276 3.A.1.27.3 100 5.6e-152 1 269 1.0000 1.0717 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
DPJHJNMP_00277 2.A.19.5.1 99.7 2.2e-171 1 325 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.19 The Ca2+:Cation Antiporter (CaCA) Family
DPJHJNMP_00299 2.A.1.12.1 99.4 5.6e-283 1 496 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
DPJHJNMP_00302 2.A.61.1.2 99.8 1e-238 1 455 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.61 The C<sub>4</sub>-dicarboxylate Uptake C (DcuC) Family
DPJHJNMP_00304 1.A.12.3.1 100 3.1e-121 1 212 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.12 The Intracellular Chloride Channel (CLIC) Family
DPJHJNMP_00315 2.A.85.1.2 99.5 0 1 655 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.85 The Aromatic Acid Exporter (ArAE) Family
DPJHJNMP_00316 8.A.1.7.1 100 3.1e-170 1 310 1.0000 1.0000 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.1 The Membrane Fusion Protein (MFP) Family
DPJHJNMP_00317 8.A.48.1.2 100 7.1e-32 1 67 1.0000 0.7444 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.48 The Putative Auxiliary Aromatic Acid Exporter (AaeX) Family
DPJHJNMP_00320 9.B.121.2.4 99.5 0 1 1266 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.121 The AsmA (AsmA) Family
DPJHJNMP_00324 9.B.157.1.3 99.7 2.8e-199 1 367 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.157 The Cell Shape-determining MreBCD (MreBCD) Family
DPJHJNMP_00325 9.B.157.1.3 100 2.9e-193 1 347 1.0000 0.9455 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.157 The Cell Shape-determining MreBCD (MreBCD) Family
DPJHJNMP_00331 2.A.21.1.1 99.8 6.9e-262 1 483 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
CIPKABJF_00001 2.A.14.1.2 99.8 4.4e-308 1 560 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.14 The Lactate Permease (LctP) Family
CIPKABJF_00017 2.A.66.12.6 98.7 5.1e-251 1 449 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.66 The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily
CIPKABJF_00018 9.B.331.1.1 99.6 1e-139 1 252 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.331 The ATP Binding Protein (ATP-BP) Family
CIPKABJF_00019 9.B.331.1.2 100 1.7e-133 1 232 1.0000 0.9789 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.331 The ATP Binding Protein (ATP-BP) Family
CIPKABJF_00020 9.B.331.1.3 100 3.5e-131 1 230 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.331 The ATP Binding Protein (ATP-BP) Family
CIPKABJF_00021 2.A.20.1.2 99.8 1.9e-275 1 499 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.20 The Inorganic Phosphate Transporter (PiT) Family
CIPKABJF_00028 3.D.7.2.5 100 0 1 567 1.0000 1.5242 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.7 The H<sub>2</sub>:Heterodisulfide Oxidoreductase (HHO) Family
CIPKABJF_00029 3.D.7.2.5 100 7.2e-225 1 392 1.0000 1.0538 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.7 The H<sub>2</sub>:Heterodisulfide Oxidoreductase (HHO) Family
CIPKABJF_00030 3.D.7.2.5 100 2.2e-203 1 328 1.0000 0.8817 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.7 The H<sub>2</sub>:Heterodisulfide Oxidoreductase (HHO) Family
CIPKABJF_00031 3.D.7.2.5 100 2.4e-222 1 372 1.0000 1.0000 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.7 The H<sub>2</sub>:Heterodisulfide Oxidoreductase (HHO) Family
CIPKABJF_00037 1.A.30.2.1 100 4.2e-74 1 141 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.30 The H+- or Na+-translocating Bacterial Flagellar Motor/ExbBD Outer Membrane Transport Energizer (Mot/Exb) Superfamily
CIPKABJF_00038 1.A.30.2.1 100 1.1e-127 1 244 1.0000 1.7305 1 Channels/Pores 1.A α-Type Channels 1.A.30 The H+- or Na+-translocating Bacterial Flagellar Motor/ExbBD Outer Membrane Transport Energizer (Mot/Exb) Superfamily
CIPKABJF_00040 9.B.27.2.1 100 3.2e-121 1 219 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.27 The Death Effector Domain A (DedA) Family
CIPKABJF_00050 3.A.1.5.41 99.8 0 1 535 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CIPKABJF_00066 1.B.17.1.1 100 3.5e-269 1 493 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.17 The Outer Membrane Factor (OMF) Family
CIPKABJF_00070 2.A.5.5.1 99.6 5e-134 1 257 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.5 The Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family
CIPKABJF_00090 9.B.31.1.1 100 1.9e-115 1 205 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.31 The PlsY/YqiH (PlsY) Family
CIPKABJF_00094 2.A.47.3.3 99.6 8.8e-273 1 487 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.47 The Divalent Anion:Na+ Symporter (DASS) Family
CIPKABJF_00134 2.A.1.5.2 88.4 4e-205 1 423 0.9953 0.9976 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CIPKABJF_00160 9.B.334.1.3 99 9.8e-275 1 506 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.334 The Archael N-terminal Transmembrane Domain Linked to a Sensor Kinase or MCP Domain (N-TM/SK/MCP) Family
CIPKABJF_00166 2.A.3.7.4 99.6 1.6e-263 1 477 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
CIPKABJF_00174 2.A.109.1.7 100 5.1e-176 1 321 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.109 The Tellurium Ion Resistance (TerC) Family
CIPKABJF_00175 2.A.23.1.13 100 2.1e-222 1 414 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.23 The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family
CIPKABJF_00176 9.B.221.1.1 98.4 5.5e-103 1 183 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.221 The 5 TMS YgjV (YgjV) Family
CIPKABJF_00179 2.A.1.14.2 99.8 9.9e-244 1 432 1.0000 0.9153 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CIPKABJF_00185 9.B.27.2.2 100 1.4e-121 1 220 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.27 The Death Effector Domain A (DedA) Family
CIPKABJF_00189 1.E.34.2.1 100 1.7e-64 1 134 1.0000 1.0000 1 Channels/Pores 1.E Holins 1.E.34 The Putative Actinobacterial Holin-X (Hol-X) Family
CIPKABJF_00193 9.B.124.1.2 100 5.7e-72 1 121 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.124 The DUF805 or PF05656 (DUF805) Family
CIPKABJF_00194 9.B.124.1.1 84.7 3.6e-55 1 118 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.124 The DUF805 or PF05656 (DUF805) Family
CIPKABJF_00199 2.A.42.2.4 100 7.8e-244 1 443 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.42 The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family
CIPKABJF_00204 2.A.42.2.2 99.8 1.4e-245 1 443 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.42 The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family
CIPKABJF_00212 2.A.1.14.14 99.1 1.5e-250 1 444 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CIPKABJF_00218 4.A.6.1.4 99.4 9e-86 1 157 1.0000 0.9290 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
CIPKABJF_00219 4.A.6.1.4 93.8 3.2e-128 1 259 1.0000 1.5325 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
CIPKABJF_00220 4.A.6.1.4 96.6 1.9e-153 1 292 1.0000 1.7278 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
CIPKABJF_00226 4.A.6.1.5 99.6 1.2e-143 1 267 1.0000 1.0000 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
CIPKABJF_00227 4.A.6.1.5 99.6 4.9e-145 1 263 1.0000 0.9850 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.6 The PTS Mannose-Fructose-Sorbose (Man) Family
CIPKABJF_00241 2.A.42.1.2 99.5 4.6e-230 1 414 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.42 The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family
CIPKABJF_00259 3.A.29.1.5 100 0 4 647 0.9954 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.29 The Mitochondrial Inner Membrane i-AAA Protease Complex (MIMP) Family
CIPKABJF_00265 2.A.7.3.18 100 2.3e-176 1 321 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.7 The Drug/Metabolite Transporter (DMT) Superfamily
CIPKABJF_00273 3.A.1.27.3 100 3e-116 1 211 1.0000 0.8406 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CIPKABJF_00274 3.A.1.27.3 100 7.5e-100 1 183 1.0000 0.7291 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CIPKABJF_00275 3.A.1.27.3 100 1.7e-137 1 260 1.0000 1.0359 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CIPKABJF_00276 3.A.1.27.3 100 5.6e-152 1 269 1.0000 1.0717 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
CIPKABJF_00277 2.A.19.5.1 99.7 2.2e-171 1 325 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.19 The Ca2+:Cation Antiporter (CaCA) Family
CIPKABJF_00299 2.A.1.12.1 99.4 5.6e-283 1 496 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
CIPKABJF_00302 2.A.61.1.2 99.8 1e-238 1 455 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.61 The C<sub>4</sub>-dicarboxylate Uptake C (DcuC) Family
CIPKABJF_00304 1.A.12.3.1 100 3.1e-121 1 212 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.12 The Intracellular Chloride Channel (CLIC) Family
CIPKABJF_00315 2.A.85.1.2 99.5 0 1 655 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.85 The Aromatic Acid Exporter (ArAE) Family
CIPKABJF_00316 8.A.1.7.1 100 3.1e-170 1 310 1.0000 1.0000 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.1 The Membrane Fusion Protein (MFP) Family
CIPKABJF_00317 8.A.48.1.2 100 7.1e-32 1 67 1.0000 0.7444 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.48 The Putative Auxiliary Aromatic Acid Exporter (AaeX) Family
CIPKABJF_00320 9.B.121.2.4 99.5 0 1 1266 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.121 The AsmA (AsmA) Family
CIPKABJF_00324 9.B.157.1.3 99.7 2.8e-199 1 367 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.157 The Cell Shape-determining MreBCD (MreBCD) Family
CIPKABJF_00325 9.B.157.1.3 100 2.9e-193 1 347 1.0000 0.9455 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.157 The Cell Shape-determining MreBCD (MreBCD) Family
CIPKABJF_00331 2.A.21.1.1 99.8 6.9e-262 1 483 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family