Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1380
  Reference Plasmid   NZ_MN310371.1
  Reference Plasmid Size   255073
  Reference Plasmid GC Content   0.56
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0116532 ALHGHBNF_00165 111172 4 Skin 0.03 protein_coding synonymous_variant LOW 522A>G Glu174Glu
M0116533 ALHGHBNF_00166 111903 5 Skin 0.03 protein_coding missense_variant MODERATE 356G>T Trp119Leu
M0116534 ALHGHBNF_00173 117625 4 Skin 0.03 protein_coding synonymous_variant LOW 162C>T Ser54Ser
M0116535 ALHGHBNF_00173 117805 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -19C>T None
M0116536 ALHGHBNF_00069 48507 13 Skin 0.09 protein_coding synonymous_variant LOW 627C>T Ser209Ser
M0116537 ALHGHBNF_00069 48516 13 Skin 0.09 protein_coding synonymous_variant LOW 636T>G Arg212Arg
M0116538 ALHGHBNF_00069 48540 13 Skin 0.09 protein_coding synonymous_variant LOW 660T>C Ala220Ala
M0116539 ALHGHBNF_00069 48609 13 Skin 0.09 protein_coding missense_variant MODERATE 729T>A Asp243Glu
M0116540 ALHGHBNF_00069 48642 13 Skin 0.09 protein_coding synonymous_variant LOW 762A>T Pro254Pro
M0116541 ALHGHBNF_00069 48682 13 Skin 0.09 protein_coding missense_variant MODERATE 802A>G Ser268Gly
M0116542 ALHGHBNF_00069 48720 13 Skin 0.09 protein_coding synonymous_variant LOW 840G>A Leu280Leu
M0116543 ALHGHBNF_00069 48768 13 Skin 0.09 protein_coding synonymous_variant LOW 888A>G Lys296Lys
M0116544 ALHGHBNF_00069 48795 11 Skin 0.07 protein_coding synonymous_variant LOW 915T>G Thr305Thr
M0116545 ALHGHBNF_00069 48810 10 Skin 0.07 protein_coding synonymous_variant LOW 930A>T Pro310Pro
M0116546 ALHGHBNF_00069 48822 10 Skin 0.07 protein_coding synonymous_variant LOW 942T>C Arg314Arg
M0116547 ALHGHBNF_00069 48828 10 Skin 0.07 protein_coding synonymous_variant LOW 948C>T Arg316Arg
M0116548 ALHGHBNF_00069 48837 10 Skin 0.07 protein_coding synonymous_variant LOW 957A>G Arg319Arg
M0116549 ALHGHBNF_00069 48843 10 Skin 0.07 protein_coding synonymous_variant LOW 963A>G Arg321Arg
M0116550 ALHGHBNF_00069 48861 10 Skin 0.07 protein_coding synonymous_variant LOW 981A>T Ile327Ile
M0116551 ALHGHBNF_00069 48864 10 Skin 0.07 protein_coding synonymous_variant LOW 984A>C Gly328Gly
M0116552 ALHGHBNF_00069 48882 10 Skin 0.07 protein_coding synonymous_variant LOW 1002C>T Tyr334Tyr
M0116553 ALHGHBNF_00069 48897 10 Skin 0.07 protein_coding synonymous_variant LOW 1017G>A Gln339Gln
M0116554 ALHGHBNF_00069 48906 10 Skin 0.07 protein_coding synonymous_variant LOW 1026A>C Gly342Gly
M0116555 ALHGHBNF_00069 48915 10 Skin 0.07 protein_coding synonymous_variant LOW 1035T>C Gly345Gly
M0116556 ALHGHBNF_00069 48921 10 Skin 0.07 protein_coding synonymous_variant LOW 1041C>T Asn347Asn
M0116557 ALHGHBNF_00069 48924 10 Skin 0.07 protein_coding synonymous_variant LOW 1044G>T Arg348Arg
M0116558 ALHGHBNF_00069 48957 11 Skin 0.07 protein_coding synonymous_variant LOW 1077C>A Leu359Leu
M0116559 ALHGHBNF_00069 49026 11 Skin 0.07 protein_coding synonymous_variant LOW 1146G>A Gln382Gln
M0116560 ALHGHBNF_00069 49047 11 Skin 0.07 protein_coding synonymous_variant LOW 1167G>T Val389Val
M0116561 ALHGHBNF_00069 49065 11 Skin 0.07 protein_coding synonymous_variant LOW 1185G>A Glu395Glu
M0116562 ALHGHBNF_00069 49071 11 Skin 0.07 protein_coding synonymous_variant LOW 1191C>G Gly397Gly
M0116563 ALHGHBNF_00069 49074 11 Skin 0.07 protein_coding synonymous_variant LOW 1194C>A Ala398Ala
M0116564 ALHGHBNF_00069 49077 11 Skin 0.07 protein_coding synonymous_variant LOW 1197C>T Ile399Ile
M0116565 ALHGHBNF_00069 49083 11 Skin 0.07 protein_coding synonymous_variant LOW 1203A>G Gln401Gln
M0116566 ALHGHBNF_00069 49089 11 Skin 0.07 protein_coding synonymous_variant LOW 1209T>G Ala403Ala
M0116567 ALHGHBNF_00069 49099 11 Skin 0.07 protein_coding missense_variant MODERATE 1219A>C Met407Leu
M0116568 ALHGHBNF_00069 49131 12 Skin 0.08 protein_coding synonymous_variant LOW 1251C>T Pro417Pro
M0116569 ALHGHBNF_00069 49140 12 Skin 0.08 protein_coding synonymous_variant LOW 1260G>C Arg420Arg
M0116570 ALHGHBNF_00069 49143 12 Skin 0.08 protein_coding synonymous_variant LOW 1263T>C Phe421Phe
M0116571 ALHGHBNF_00069 49149 12 Skin 0.08 protein_coding synonymous_variant LOW 1269C>T Gly423Gly
M0116572 ALHGHBNF_00069 49152 12 Skin 0.08 protein_coding synonymous_variant LOW 1272C>G Thr424Thr
M0116573 ALHGHBNF_00069 49164 12 Skin 0.08 protein_coding synonymous_variant LOW 1284A>C Ile428Ile
M0116574 ALHGHBNF_00071 50895 9 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -138C>T None
M0116575 ALHGHBNF_00071 51059 9 Skin 0.06 protein_coding synonymous_variant LOW 27G>A Leu9Leu
M0116576 ALHGHBNF_00073 51956 6 Skin 0.04 protein_coding synonymous_variant LOW 165C>T Asp55Asp
M0116577 ALHGHBNF_00272 207348 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -68A>C None
M0116578 ALHGHBNF_00183 126774 5 Skin 0.03 protein_coding missense_variant MODERATE 391G>A Glu131Lys
M0116579 ALHGHBNF_00058 41884 3 Skin 0.02 protein_coding synonymous_variant LOW 834T>C His278His
M0116580 ALHGHBNF_00058 41942 3 Skin 0.02 protein_coding missense_variant MODERATE 892T>C Tyr298His
M0116581 ALHGHBNF_00058 41995 3 Skin 0.02 protein_coding synonymous_variant LOW 945G>T Ser315Ser
M0116582 ALHGHBNF_00058 41998 3 Skin 0.02 protein_coding synonymous_variant LOW 948T>G Ala316Ala
M0116583 ALHGHBNF_00058 42102 3 Skin 0.02 protein_coding missense_variant MODERATE 1052C>T Ala351Val
M0116584 ALHGHBNF_00058 42106 3 Skin 0.02 protein_coding synonymous_variant LOW 1056C>T Asn352Asn
M0116585 ALHGHBNF_00058 42177 3 Skin 0.02 protein_coding missense_variant MODERATE 1127C>T Ala376Val
M0116586 ALHGHBNF_00058 42214 3 Skin 0.02 protein_coding synonymous_variant LOW 1164T>A Ile388Ile
M0116587 ALHGHBNF_00058 42253 3 Skin 0.02 protein_coding synonymous_variant LOW 1203C>A Pro401Pro
M0116588 ALHGHBNF_00058 42255 3 Skin 0.02 protein_coding missense_variant MODERATE 1205A>G Lys402Arg
M0116589 ALHGHBNF_00058 42282 3 Skin 0.02 protein_coding missense_variant MODERATE 1232C>T Ala411Val
M0116590 ALHGHBNF_00058 42322 3 Skin 0.02 protein_coding synonymous_variant LOW 1272A>G Val424Val
M0116591 ALHGHBNF_00058 42367 3 Skin 0.02 protein_coding synonymous_variant LOW 1317A>G Gly439Gly
M0116592 ALHGHBNF_00058 42394 3 Skin 0.02 protein_coding synonymous_variant LOW 1344C>T Asn448Asn
M0116593 ALHGHBNF_00058 42403 3 Skin 0.02 protein_coding synonymous_variant LOW 1353T>C Phe451Phe
M0116594 ALHGHBNF_00058 42514 3 Skin 0.02 protein_coding synonymous_variant LOW 1464T>C His488His
M0116595 ALHGHBNF_00058 42515 3 Skin 0.02 protein_coding synonymous_variant LOW 1465C>T Leu489Leu
M0116596 ALHGHBNF_00058 42526 3 Skin 0.02 protein_coding synonymous_variant LOW 1476A>C Pro492Pro
M0116597 ALHGHBNF_00058 42528 3 Skin 0.02 protein_coding missense_variant MODERATE 1478C>T Thr493Met
M0116598 ALHGHBNF_00058 42529 3 Skin 0.02 protein_coding synonymous_variant LOW 1479G>A Thr493Thr
M0116599 ALHGHBNF_00058 42560 3 Skin 0.02 protein_coding missense_variant MODERATE 1510A>T Thr504Ser
M0116600 ALHGHBNF_00058 42578 3 Skin 0.02 protein_coding missense_variant MODERATE 1528A>C Thr510Pro
M0116601 ALHGHBNF_00058 42613 3 Skin 0.02 protein_coding synonymous_variant LOW 1563G>A Glu521Glu
M0116602 ALHGHBNF_00058 42627 3 Skin 0.02 protein_coding missense_variant MODERATE 1577A>G Gln526Arg
M0116603 ALHGHBNF_00058 42631 3 Skin 0.02 protein_coding synonymous_variant LOW 1581A>G Gly527Gly
M0116604 ALHGHBNF_00058 42643 3 Skin 0.02 protein_coding synonymous_variant LOW 1593T>C Pro531Pro
M0116605 ALHGHBNF_00058 42706 3 Skin 0.02 protein_coding synonymous_variant LOW 1656A>C Val552Val
M0116606 ALHGHBNF_00058 42719 3 Skin 0.02 protein_coding missense_variant MODERATE 1669A>G Ser557Gly
M0116607 ALHGHBNF_00058 42797 3 Skin 0.02 protein_coding missense_variant MODERATE 1747A>G Lys583Glu
M0116608 ALHGHBNF_00058 42850 3 Skin 0.02 protein_coding synonymous_variant LOW 1800C>A Val600Val
M0116609 ALHGHBNF_00058 42902 3 Skin 0.02 protein_coding missense_variant MODERATE 1852G>A Val618Ile
M0116610 ALHGHBNF_00058 42934 3 Skin 0.02 protein_coding synonymous_variant LOW 1884G>A Gln628Gln
M0116611 ALHGHBNF_00058 42945 3 Skin 0.02 protein_coding missense_variant MODERATE 1895A>T Glu632Val
M0116612 ALHGHBNF_00058 42951 3 Skin 0.02 protein_coding missense_variant MODERATE 1901G>A Arg634Gln
M0116613 ALHGHBNF_00058 42955 3 Skin 0.02 protein_coding synonymous_variant LOW 1905C>T Ile635Ile
M0116614 ALHGHBNF_00058 42958 3 Skin 0.02 protein_coding synonymous_variant LOW 1908C>G Val636Val
M0116615 ALHGHBNF_00058 43006 3 Skin 0.02 protein_coding synonymous_variant LOW 1956G>A Lys652Lys
M0116616 ALHGHBNF_00058 43033 3 Skin 0.02 protein_coding synonymous_variant LOW 1983G>A Glu661Glu
M0116617 ALHGHBNF_00054 43068 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4526T>C None
M0116618 ALHGHBNF_00054 43087 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4545A>G None
M0116619 ALHGHBNF_00059 43116 3 Skin 0.02 protein_coding missense_variant MODERATE 14A>G Gln5Arg
M0116620 ALHGHBNF_00059 43118 3 Skin 0.02 protein_coding missense_variant MODERATE 16A>G Lys6Glu
M0116621 ALHGHBNF_00059 43121 3 Skin 0.02 protein_coding missense_variant MODERATE 19A>G Lys7Glu
M0116622 ALHGHBNF_00059 43124 3 Skin 0.02 protein_coding synonymous_variant LOW 22C>T Leu8Leu
M0116623 ALHGHBNF_00059 43126 3 Skin 0.02 protein_coding synonymous_variant LOW 24G>A Leu8Leu
M0116624 ALHGHBNF_00270 204232 3 Skin 0.02 protein_coding missense_variant MODERATE 1612A>G Thr538Ala
M0116625 ALHGHBNF_00242 182365 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -114A>G None
M0116626 ALHGHBNF_00250 189775 12 Skin 0.08 protein_coding synonymous_variant LOW 252A>G Gly84Gly
M0116627 ALHGHBNF_00061 44730 8 Skin 0.05 protein_coding missense_variant MODERATE 11A>G Asp4Gly
M0116628 ALHGHBNF_00062 44909 8 Skin 0.05 protein_coding missense_variant MODERATE 38A>T Tyr13Phe
M0116629 ALHGHBNF_00062 45137 7 Skin 0.05 protein_coding missense_variant MODERATE 266A>G His89Arg
M0116630 ALHGHBNF_00064 45771 7 Skin 0.05 protein_coding missense_variant MODERATE 228T>G Ser76Arg
M0116631 ALHGHBNF_00064 45790 7 Skin 0.05 protein_coding missense_variant MODERATE 247A>G Thr83Ala
M0116632 ALHGHBNF_00064 45837 7 Skin 0.05 protein_coding synonymous_variant LOW 294A>G Gly98Gly
M0116633 ALHGHBNF_00064 45899 7 Skin 0.05 protein_coding missense_variant MODERATE 356G>A Ser119Asn
M0116634 ALHGHBNF_00065 46004 7 Skin 0.05 protein_coding synonymous_variant LOW 54C>G Val18Val
M0116635 ALHGHBNF_00239 180667 5 Skin 0.03 protein_coding missense_variant MODERATE 718A>T Ser240Cys
M0116636 ALHGHBNF_00247 189817 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -2556G>C None
M0116637 ALHGHBNF_00247 191903 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4642A>G None
M0116638 ALHGHBNF_00061 47385 9 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -2645T>C None
M0116639 ALHGHBNF_00091 66119 4 Skin 0.03 protein_coding synonymous_variant LOW 127C>T Leu43Leu
M0116640 ALHGHBNF_00091 66141 4 Skin 0.03 protein_coding synonymous_variant LOW 105G>A Val35Val
M0116641 ALHGHBNF_00091 66144 4 Skin 0.03 protein_coding synonymous_variant LOW 102A>T Gly34Gly
M0116642 ALHGHBNF_00091 66159 4 Skin 0.03 protein_coding synonymous_variant LOW 87C>T Ser29Ser
M0116643 ALHGHBNF_00091 66165 4 Skin 0.03 protein_coding synonymous_variant LOW 81T>C Arg27Arg
M0116644 ALHGHBNF_00091 66185 4 Skin 0.03 protein_coding missense_variant MODERATE 61G>A Glu21Lys
M0116645 ALHGHBNF_00091 66195 4 Skin 0.03 protein_coding synonymous_variant LOW 51G>T Arg17Arg
M0116646 ALHGHBNF_00091 66198 4 Skin 0.03 protein_coding synonymous_variant LOW 48A>G Ala16Ala
M0116647 ALHGHBNF_00091 66204 4 Skin 0.03 protein_coding synonymous_variant LOW 42G>A Glu14Glu
M0116648 ALHGHBNF_00091 66215 4 Skin 0.03 protein_coding synonymous_variant LOW 31C>T Leu11Leu
M0116649 ALHGHBNF_00091 66227 4 Skin 0.03 protein_coding missense_variant MODERATE 19A>G Ile7Val
M0116650 ALHGHBNF_00094 67524 4 Skin 0.03 protein_coding synonymous_variant LOW 285A>G Gln95Gln
M0116651 ALHGHBNF_00094 67533 4 Skin 0.03 protein_coding synonymous_variant LOW 294T>A Gly98Gly
M0116652 ALHGHBNF_00082 67565 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4626G>A None
M0116653 ALHGHBNF_00096 68271 4 Skin 0.03 protein_coding synonymous_variant LOW 171G>T Val57Val
M0116654 ALHGHBNF_00096 68283 4 Skin 0.03 protein_coding synonymous_variant LOW 183A>G Pro61Pro
M0116655 ALHGHBNF_00096 68331 4 Skin 0.03 protein_coding synonymous_variant LOW 231T>A Ile77Ile
M0116656 ALHGHBNF_00097 68363 4 Skin 0.03 protein_coding synonymous_variant LOW 114G>A Ala38Ala
M0116657 ALHGHBNF_00097 68365 4 Skin 0.03 protein_coding missense_variant MODERATE 112G>C Ala38Pro
M0116658 ALHGHBNF_00097 68377 4 Skin 0.03 protein_coding missense_variant MODERATE 100T>C Ser34Pro
M0116659 ALHGHBNF_00097 68392 4 Skin 0.03 protein_coding missense_variant MODERATE 85G>A Asp29Asn
M0116660 ALHGHBNF_00097 68400 4 Skin 0.03 protein_coding missense_variant MODERATE 77A>C Asp26Ala
M0116661 ALHGHBNF_00097 68423 4 Skin 0.03 protein_coding synonymous_variant LOW 54C>T Phe18Phe
M0116662 ALHGHBNF_00084 68502 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4862G>T None
M0116663 ALHGHBNF_00098 68521 4 Skin 0.03 protein_coding missense_variant MODERATE 19A>C Thr7Pro
M0116664 ALHGHBNF_00098 68526 4 Skin 0.03 protein_coding synonymous_variant LOW 24T>C Pro8Pro
M0116665 ALHGHBNF_00091 71233 15 Skin 0.10 protein_coding upstream_gene_variant MODIFIER -4988G>A None
M0116666 ALHGHBNF_00281 212445 3 Skin 0.02 protein_coding missense_variant MODERATE 709A>G Thr237Ala
M0116667 ALHGHBNF_00281 212490 3 Skin 0.02 protein_coding synonymous_variant LOW 664A>C Arg222Arg
M0116668 ALHGHBNF_00281 212526 3 Skin 0.02 protein_coding synonymous_variant LOW 628T>C Leu210Leu
M0116669 ALHGHBNF_00281 212593 3 Skin 0.02 protein_coding synonymous_variant LOW 561T>C Thr187Thr
M0116670 ALHGHBNF_00097 72887 13 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -4411G>A None
M0116671 ALHGHBNF_00105 73463 12 Skin 0.08 protein_coding synonymous_variant LOW 510T>C Ile170Ile
M0116672 ALHGHBNF_00236 181207 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -3920G>A None
M0116673 ALHGHBNF_00173 117327 3 Skin 0.02 protein_coding missense_variant MODERATE 460T>A Phe154Ile
M0116674 ALHGHBNF_00173 117340 3 Skin 0.02 protein_coding synonymous_variant LOW 447T>C Asp149Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
ALHGHBNF_00205 Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Chlorhexidine [class: Biguanides], Pyronin Y [class: Xanthene], Rhodamine 6G [class: Xanthene], Methyl Viologen [class: Paraquat], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], 4,6-diamidino-2-phenylindole (DAPI) [class: Diamindine], Acridine Orange [class: Acridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Sodium Deoxycholate (SDC) [class: Acid], Crystal Violet [class: Triarylmethane], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)] 100 1.1e-60 1 115 1.0000 1.0000 experiment
ALHGHBNF_00263 Mercury (Hg) 77.7 9.4e-243 1 560 1.0018 1.0000 experiment
ALHGHBNF_00265 Mercury (Hg) 77.2 2e-33 1 92 1.0000 1.0110 experiment
ALHGHBNF_00266 Mercury (Hg) 84.5 1.5e-54 1 116 1.0000 1.0000 experiment
ALHGHBNF_00267 Mercury (Hg) 77.7 2.1e-58 1 139 1.0000 0.9653 experiment
ALHGHBNF_00273 Mercury (Hg), Phenylmercury Acetate [class: Organo-mercury] 94.4 1.5e-75 1 144 1.0000 1.0000 experiment
ALHGHBNF_00274 Mercury (Hg) 94 4.1e-60 1 116 1.0000 1.0000 experiment
ALHGHBNF_00275 Mercury (Hg) 93.3 4.9e-40 1 90 0.9890 0.9890 experiment
ALHGHBNF_00276 Mercury (Hg) 100 3.3e-40 1 81 1.0000 1.0000 experiment
ALHGHBNF_00277 Mercury (Hg) 85.4 1.6e-266 1 548 1.0237 1.0000 experiment
ALHGHBNF_00278 Mercury (Hg) 98.3 1.6e-62 1 121 1.0000 1.0000 experiment
ALHGHBNF_00279 Mercury (Hg) 100 2.9e-41 1 78 1.0000 1.0000 experiment
ALHGHBNF_00263 Mercury (Hg), Phenylmercury Acetate [class: Organo-mercury] 100 2.19999999999959e-312 1 560 1.0000 1.0000 prediction
ALHGHBNF_00265 Mercury (Hg) 100 9.8e-42 1 92 1.0000 1.0000 prediction
ALHGHBNF_00266 Mercury (Hg) 100 1.3e-59 1 116 1.0000 1.0000 prediction
ALHGHBNF_00267 Mercury (Hg) 100 3e-74 1 139 1.0000 1.0000 prediction
ALHGHBNF_00273 Mercury (Hg) 100 6.6e-77 1 144 1.0000 1.0000 prediction
ALHGHBNF_00274 Mercury (Hg) 100 7e-61 1 116 1.0000 1.0000 prediction
ALHGHBNF_00275 Mercury (Hg) 100 8.2e-41 1 91 1.0000 0.9785 prediction
ALHGHBNF_00276 Mercury (Hg) 100 7.6e-38 1 81 1.0000 1.0000 prediction
ALHGHBNF_00277 Mercury (Hg), Phenylmercury Acetate [class: Organo-mercury] 100 1.7e-306 1 548 1.0000 1.0000 prediction
ALHGHBNF_00278 Mercury (Hg) 100 7.3e-61 1 121 1.0000 1.0000 prediction
ALHGHBNF_00279 Mercury (Hg) 100 6.6e-39 1 78 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
ALHGHBNF_00204 ARO:3000410 100 2.94e-199 1 279 1.0000 1.0000 sulfonamide antibiotic sulfonamide resistant sul antibiotic target replacement
ALHGHBNF_00205 ARO:3005010 100 2.01e-78 1 115 1.0000 1.0000 disinfecting agents and antiseptics major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
ALHGHBNF_00206 ARO:3002577 100 2.16e-128 1 172 1.0000 0.9348 aminoglycoside antibiotic AAC(6') antibiotic inactivation
ALHGHBNF_00207 ARO:3002528 98.7 1.4e-108 1 154 1.0000 1.0000 aminoglycoside antibiotic AAC(3) antibiotic inactivation
ALHGHBNF_00208 ARO:3002272 100 1.91e-193 1 266 1.0000 1.0000 carbapenem VIM beta-lactamase antibiotic inactivation
ALHGHBNF_00209 ARO:3004635 100 2.96e-109 1 152 1.0000 1.0000 aminoglycoside antibiotic AAC(6') antibiotic inactivation






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
ALHGHBNF_00006 PHI:3165 hopA1 82.6 4.2e-145 1 293 1.0000 1.0000 eudicots leaf spot (celery); leaf spot (eggplant); leaf spot (sweet pepper); wilt rot (muskmelon); stem rot (muskmelon); stem rot (chrysanthemum); leaf spot (soybean) effector (plant avirulence determinant) effector (plant avirulence determinant)
ALHGHBNF_00082 PHI:3165 hopA1 82.6 4.2e-145 1 293 1.0000 1.0000 eudicots leaf spot (celery); leaf spot (eggplant); leaf spot (sweet pepper); wilt rot (muskmelon); stem rot (muskmelon); stem rot (chrysanthemum); leaf spot (soybean) effector (plant avirulence determinant) effector (plant avirulence determinant)
ALHGHBNF_00210 PHI:9804 int 100 3e-14 1 37 0.1098 1.0000 rodents gastroenteritis integrase reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
ALHGHBNF_00265 1.A.72.3.1 77.2 9.8e-32 1 92 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.72 The Mercuric Ion Pore (Mer) Superfamily
ALHGHBNF_00266 1.A.72.3.1 80.2 5e-49 1 116 1.0000 1.2747 1 Channels/Pores 1.A α-Type Channels 1.A.72 The Mercuric Ion Pore (Mer) Superfamily
ALHGHBNF_00274 1.A.72.3.1 93.1 1.1e-56 1 116 1.0000 1.2747 1 Channels/Pores 1.A α-Type Channels 1.A.72 The Mercuric Ion Pore (Mer) Superfamily
ALHGHBNF_00275 1.A.72.3.1 93.3 3.1e-38 1 90 0.9890 0.9890 1 Channels/Pores 1.A α-Type Channels 1.A.72 The Mercuric Ion Pore (Mer) Superfamily
ALHGHBNF_00276 1.A.72.1.1 100 1.2e-38 1 81 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.72 The Mercuric Ion Pore (Mer) Superfamily
ALHGHBNF_00279 1.A.72.5.1 78.2 1.1e-31 1 78 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.72 The Mercuric Ion Pore (Mer) Superfamily