Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1382
  Reference Plasmid   NZ_MN480763.1
  Reference Plasmid Size   148112
  Reference Plasmid GC Content   0.34
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0208619 BBPOMDPE_00071 71615 3 Gut 0.14 protein_coding missense_variant MODERATE 782G>A Arg261Lys
M0208620 BBPOMDPE_00071 71674 3 Gut 0.14 protein_coding synonymous_variant LOW 723G>A Glu241Glu
M0208621 BBPOMDPE_00071 71725 3 Gut 0.14 protein_coding synonymous_variant LOW 672A>T Ala224Ala
M0208622 BBPOMDPE_00071 71810 3 Gut 0.14 protein_coding missense_variant MODERATE 587T>C Val196Ala
M0208623 BBPOMDPE_00071 71872 3 Gut 0.14 protein_coding synonymous_variant LOW 525A>G Gly175Gly
M0208624 BBPOMDPE_00071 71905 3 Gut 0.14 protein_coding missense_variant MODERATE 492T>A Phe164Leu
M0208625 BBPOMDPE_00071 71955 3 Gut 0.14 protein_coding missense_variant MODERATE 442T>A Ser148Thr
M0208626 BBPOMDPE_00071 72001 3 Gut 0.14 protein_coding synonymous_variant LOW 396G>A Pro132Pro
M0208627 BBPOMDPE_00071 72130 3 Gut 0.14 protein_coding synonymous_variant LOW 267T>C Ser89Ser
M0208628 BBPOMDPE_00071 72247 3 Gut 0.14 protein_coding synonymous_variant LOW 150T>C Gly50Gly
M0208629 BBPOMDPE_00071 72404 3 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -8A>G None
M0208630 BBPOMDPE_00072 73108 4 Gut 0.18 protein_coding synonymous_variant LOW 43C>T Leu15Leu
M0208631 BBPOMDPE_00072 73136 4 Gut 0.18 protein_coding synonymous_variant LOW 15T>C Thr5Thr
M0208632 BBPOMDPE_00073 73440 5 Gut 0.23 protein_coding missense_variant MODERATE 165A>T Arg55Ser
M0208633 BBPOMDPE_00073 73513 5 Gut 0.23 protein_coding missense_variant MODERATE 92G>A Ser31Asn
M0208634 BBPOMDPE_00073 73596 5 Gut 0.23 protein_coding synonymous_variant LOW 9G>T Pro3Pro
M0208635 BBPOMDPE_00073 73597 5 Gut 0.23 protein_coding missense_variant MODERATE 8C>T Pro3Leu
M0208636 BBPOMDPE_00071 73615 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -1219G>A None
M0208637 BBPOMDPE_00074 73665 4 Gut 0.18 protein_coding synonymous_variant LOW 1503G>T Ala501Ala
M0208638 BBPOMDPE_00074 73908 6 Gut 0.27 protein_coding synonymous_variant LOW 1260T>C Asp420Asp
M0208639 BBPOMDPE_00074 73940 6 Gut 0.27 protein_coding missense_variant MODERATE 1228T>G Ser410Ala
M0208640 BBPOMDPE_00074 73956 6 Gut 0.27 protein_coding synonymous_variant LOW 1212G>A Val404Val
M0208641 BBPOMDPE_00074 74204 6 Gut 0.27 protein_coding missense_variant MODERATE 964A>T Ser322Cys
M0208642 BBPOMDPE_00074 74209 6 Gut 0.27 protein_coding missense_variant MODERATE 959G>A Gly320Glu
M0208643 BBPOMDPE_00074 74214 3 Gut 0.14 protein_coding synonymous_variant LOW 954A>G Lys318Lys
M0208644 BBPOMDPE_00074 74267 3 Gut 0.14 protein_coding missense_variant MODERATE 901A>G Ser301Gly
M0208645 BBPOMDPE_00074 74382 5 Gut 0.23 protein_coding synonymous_variant LOW 786A>G Lys262Lys
M0208646 BBPOMDPE_00074 74399 5 Gut 0.23 protein_coding missense_variant MODERATE 769A>G Asn257Asp
M0208647 BBPOMDPE_00074 74428 5 Gut 0.23 protein_coding missense_variant MODERATE 740A>G Lys247Arg
M0208648 BBPOMDPE_00074 74430 5 Gut 0.23 protein_coding synonymous_variant LOW 738A>C Leu246Leu
M0208649 BBPOMDPE_00074 74433 5 Gut 0.23 protein_coding synonymous_variant LOW 735C>T Phe245Phe
M0208650 BBPOMDPE_00074 74442 4 Gut 0.18 protein_coding synonymous_variant LOW 726C>T Thr242Thr
M0208651 BBPOMDPE_00074 74535 6 Gut 0.27 protein_coding synonymous_variant LOW 633A>T Arg211Arg
M0208652 BBPOMDPE_00074 74628 4 Gut 0.18 protein_coding missense_variant MODERATE 540C>A His180Gln
M0208653 BBPOMDPE_00074 74630 4 Gut 0.18 protein_coding missense_variant MODERATE 538C>G His180Asp
M0208654 BBPOMDPE_00074 74631 4 Gut 0.18 protein_coding synonymous_variant LOW 537A>T Gly179Gly
M0208655 BBPOMDPE_00074 74632 4 Gut 0.18 protein_coding missense_variant MODERATE 536G>A Gly179Glu
M0208656 BBPOMDPE_00076 75769 3 Gut 0.14 protein_coding synonymous_variant LOW 1440A>T Gly480Gly
M0208657 BBPOMDPE_00076 76081 6 Gut 0.27 protein_coding synonymous_variant LOW 1128T>C Asp376Asp
M0208658 BBPOMDPE_00076 76327 4 Gut 0.18 protein_coding synonymous_variant LOW 882C>T Pro294Pro
M0208659 BBPOMDPE_00076 76402 4 Gut 0.18 protein_coding synonymous_variant LOW 807T>C Asp269Asp
M0208660 BBPOMDPE_00076 76561 7 Gut 0.32 protein_coding synonymous_variant LOW 648T>A Leu216Leu
M0208661 BBPOMDPE_00076 76567 7 Gut 0.32 protein_coding synonymous_variant LOW 642T>C Ala214Ala
M0208662 BBPOMDPE_00076 76756 4 Gut 0.18 protein_coding synonymous_variant LOW 453G>A Val151Val
M0208663 BBPOMDPE_00076 76882 3 Gut 0.14 protein_coding missense_variant MODERATE 327C>A His109Gln
M0208664 BBPOMDPE_00076 76889 5 Gut 0.23 protein_coding missense_variant MODERATE 320T>A Val107Glu
M0208665 BBPOMDPE_00076 77017 3 Gut 0.14 protein_coding synonymous_variant LOW 192A>G Gln64Gln
M0208666 BBPOMDPE_00076 77059 5 Gut 0.23 protein_coding missense_variant MODERATE 150T>A Phe50Leu
M0208667 BBPOMDPE_00076 77068 5 Gut 0.23 protein_coding synonymous_variant LOW 141A>G Gln47Gln
M0208668 BBPOMDPE_00076 77127 6 Gut 0.27 protein_coding missense_variant MODERATE 82A>G Thr28Ala
M0208669 BBPOMDPE_00076 77129 7 Gut 0.32 protein_coding missense_variant MODERATE 80T>C Val27Ala
M0208670 BBPOMDPE_00076 77152 6 Gut 0.27 protein_coding synonymous_variant LOW 57T>G Pro19Pro
M0208671 BBPOMDPE_00076 77173 4 Gut 0.18 protein_coding synonymous_variant LOW 36G>T Thr12Thr
M0208672 BBPOMDPE_00076 77190 3 Gut 0.14 protein_coding missense_variant MODERATE 19C>G Leu7Val
M0208673 BBPOMDPE_00076 77203 7 Gut 0.32 protein_coding synonymous_variant LOW 6T>A Thr2Thr
M0208674 BBPOMDPE_00076 77205 7 Gut 0.32 protein_coding missense_variant MODERATE 4A>G Thr2Ala
M0208675 BBPOMDPE_00071 77254 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4858C>G None
M0208676 BBPOMDPE_00071 77299 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4903C>T None
M0208677 BBPOMDPE_00071 77301 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4905A>G None
M0208678 BBPOMDPE_00071 77312 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4916C>T None
M0208679 BBPOMDPE_00077 77360 6 Gut 0.27 protein_coding synonymous_variant LOW 558C>T Leu186Leu
M0208680 BBPOMDPE_00077 77377 6 Gut 0.27 protein_coding missense_variant MODERATE 541T>G Tyr181Asp
M0208681 BBPOMDPE_00077 77450 7 Gut 0.32 protein_coding missense_variant MODERATE 468A>T Gln156His
M0208682 BBPOMDPE_00077 77554 6 Gut 0.27 protein_coding missense_variant MODERATE 364A>G Asn122Asp
M0208683 BBPOMDPE_00077 77615 6 Gut 0.27 protein_coding synonymous_variant LOW 303A>T Val101Val
M0208684 BBPOMDPE_00077 77795 6 Gut 0.27 protein_coding missense_variant MODERATE 123T>G Asn41Lys
M0208685 BBPOMDPE_00077 77807 8 Gut 0.36 protein_coding synonymous_variant LOW 111T>C His37His
M0208686 BBPOMDPE_00077 77852 8 Gut 0.36 protein_coding synonymous_variant LOW 66G>A Glu22Glu
M0208687 BBPOMDPE_00077 77858 7 Gut 0.32 protein_coding synonymous_variant LOW 60C>T Tyr20Tyr
M0208688 BBPOMDPE_00077 77865 8 Gut 0.36 protein_coding missense_variant MODERATE 53A>T Lys18Ile
M0208689 BBPOMDPE_00077 77914 6 Gut 0.27 protein_coding missense_variant MODERATE 4G>A Asp2Asn
M0208690 BBPOMDPE_00078 77954 8 Gut 0.36 protein_coding missense_variant MODERATE 1336A>G Ile446Val
M0208691 BBPOMDPE_00078 78000 3 Gut 0.14 protein_coding synonymous_variant LOW 1290T>A Ser430Ser
M0208692 BBPOMDPE_00078 78024 3 Gut 0.14 protein_coding synonymous_variant LOW 1266C>T Ile422Ile
M0208693 BBPOMDPE_00074 74325 3 Gut 0.14 protein_coding synonymous_variant LOW 843C>T Tyr281Tyr
M0208694 BBPOMDPE_00074 74774 3 Gut 0.14 protein_coding missense_variant MODERATE 394A>G Ile132Val
M0208695 BBPOMDPE_00074 74786 5 Gut 0.23 protein_coding missense_variant MODERATE 382A>G Lys128Glu
M0208696 BBPOMDPE_00074 74789 5 Gut 0.23 protein_coding missense_variant MODERATE 379C>A Gln127Lys
M0208697 BBPOMDPE_00074 74790 5 Gut 0.23 protein_coding synonymous_variant LOW 378C>T Val126Val
M0208698 BBPOMDPE_00074 74791 5 Gut 0.23 protein_coding missense_variant MODERATE 377T>C Val126Ala
M0208699 BBPOMDPE_00074 74820 5 Gut 0.23 protein_coding synonymous_variant LOW 348G>A Val116Val
M0208700 BBPOMDPE_00074 74835 4 Gut 0.18 protein_coding synonymous_variant LOW 333T>C Ala111Ala
M0208701 BBPOMDPE_00074 74970 4 Gut 0.18 protein_coding synonymous_variant LOW 198G>A Val66Val
M0208702 BBPOMDPE_00074 74988 6 Gut 0.27 protein_coding synonymous_variant LOW 180T>C Asn60Asn
M0208703 BBPOMDPE_00071 75185 3 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -2789G>A None
M0208704 BBPOMDPE_00071 75215 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -2819A>G None
M0208705 BBPOMDPE_00071 75216 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -2820T>A None
M0208706 BBPOMDPE_00071 75217 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -2821A>T None
M0208707 BBPOMDPE_00071 75221 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -2825C>T None
M0208708 BBPOMDPE_00075 75258 4 Gut 0.18 protein_coding synonymous_variant LOW 471G>A Ser157Ser
M0208709 BBPOMDPE_00075 75270 3 Gut 0.14 protein_coding synonymous_variant LOW 459G>A Leu153Leu
M0208710 BBPOMDPE_00075 75417 6 Gut 0.27 protein_coding synonymous_variant LOW 312C>T Val104Val
M0208711 BBPOMDPE_00075 75438 4 Gut 0.18 protein_coding synonymous_variant LOW 291G>A Glu97Glu
M0208712 BBPOMDPE_00075 75453 5 Gut 0.23 protein_coding synonymous_variant LOW 276A>G Glu92Glu
M0208713 BBPOMDPE_00075 75570 3 Gut 0.14 protein_coding synonymous_variant LOW 159G>T Leu53Leu
M0208714 BBPOMDPE_00075 75585 6 Gut 0.27 protein_coding synonymous_variant LOW 144A>G Gly48Gly
M0208715 BBPOMDPE_00075 75614 4 Gut 0.18 protein_coding missense_variant MODERATE 115C>A His39Asn
M0208716 BBPOMDPE_00076 75745 5 Gut 0.23 protein_coding synonymous_variant LOW 1464T>C Phe488Phe
M0208717 BBPOMDPE_00076 75892 5 Gut 0.23 protein_coding synonymous_variant LOW 1317C>T Phe439Phe
M0208718 BBPOMDPE_00076 76099 3 Gut 0.14 protein_coding synonymous_variant LOW 1110T>A Ala370Ala
M0208719 BBPOMDPE_00076 76239 4 Gut 0.18 protein_coding missense_variant MODERATE 970A>T Thr324Ser
M0208720 BBPOMDPE_00076 76435 3 Gut 0.14 protein_coding synonymous_variant LOW 774A>G Val258Val
M0208721 BBPOMDPE_00076 76447 4 Gut 0.18 protein_coding synonymous_variant LOW 762A>G Ser254Ser
M0208722 BBPOMDPE_00076 76960 5 Gut 0.23 protein_coding synonymous_variant LOW 249C>T Ile83Ile
M0208723 BBPOMDPE_00076 76963 5 Gut 0.23 protein_coding synonymous_variant LOW 246A>C Thr82Thr
M0208724 BBPOMDPE_00076 76969 4 Gut 0.18 protein_coding synonymous_variant LOW 240T>C Ile80Ile
M0208725 BBPOMDPE_00076 76977 5 Gut 0.23 protein_coding missense_variant MODERATE 232A>G Thr78Ala
M0208726 BBPOMDPE_00076 76981 5 Gut 0.23 protein_coding synonymous_variant LOW 228T>C Ile76Ile
M0208727 BBPOMDPE_00076 76992 4 Gut 0.18 protein_coding missense_variant MODERATE 217A>G Ile73Val
M0208728 BBPOMDPE_00076 77178 6 Gut 0.27 protein_coding missense_variant MODERATE 31A>C Lys11Gln
M0208729 BBPOMDPE_00076 77193 6 Gut 0.27 protein_coding missense_variant MODERATE 16A>G Thr6Ala
M0208730 BBPOMDPE_00078 78053 7 Gut 0.32 protein_coding missense_variant MODERATE 1237A>G Thr413Ala
M0208731 BBPOMDPE_00078 78069 3 Gut 0.14 protein_coding synonymous_variant LOW 1221A>G Gln407Gln
M0208732 BBPOMDPE_00078 78075 6 Gut 0.27 protein_coding synonymous_variant LOW 1215T>G Thr405Thr
M0208733 BBPOMDPE_00078 78150 5 Gut 0.23 protein_coding synonymous_variant LOW 1140A>T Leu380Leu
M0208734 BBPOMDPE_00078 78159 6 Gut 0.27 protein_coding synonymous_variant LOW 1131T>A Leu377Leu
M0208735 BBPOMDPE_00078 78160 7 Gut 0.32 protein_coding missense_variant MODERATE 1130T>C Leu377Pro
M0208736 BBPOMDPE_00078 78165 5 Gut 0.23 protein_coding synonymous_variant LOW 1125C>T Val375Val
M0208737 BBPOMDPE_00078 78177 6 Gut 0.27 protein_coding synonymous_variant LOW 1113G>A Glu371Glu
M0208738 BBPOMDPE_00078 78288 6 Gut 0.27 protein_coding synonymous_variant LOW 1002A>C Thr334Thr
M0208739 BBPOMDPE_00078 78315 6 Gut 0.27 protein_coding synonymous_variant LOW 975A>G Thr325Thr
M0208740 BBPOMDPE_00078 78363 3 Gut 0.14 protein_coding synonymous_variant LOW 927C>T Gly309Gly
M0208741 BBPOMDPE_00078 78372 5 Gut 0.23 protein_coding synonymous_variant LOW 918A>G Ser306Ser
M0208742 BBPOMDPE_00078 78378 4 Gut 0.18 protein_coding synonymous_variant LOW 912T>C Arg304Arg
M0208743 BBPOMDPE_00078 78420 3 Gut 0.14 protein_coding synonymous_variant LOW 870T>C Phe290Phe
M0208744 BBPOMDPE_00078 78423 3 Gut 0.14 protein_coding synonymous_variant LOW 867C>T Ser289Ser
M0208745 BBPOMDPE_00078 78426 5 Gut 0.23 protein_coding synonymous_variant LOW 864A>G Lys288Lys
M0208746 BBPOMDPE_00078 78435 5 Gut 0.23 protein_coding synonymous_variant LOW 855T>A Thr285Thr
M0208747 BBPOMDPE_00078 78507 3 Gut 0.14 protein_coding synonymous_variant LOW 783T>C Ser261Ser
M0208748 BBPOMDPE_00078 78615 6 Gut 0.27 protein_coding synonymous_variant LOW 675A>G Lys225Lys
M0208749 BBPOMDPE_00078 78675 5 Gut 0.23 protein_coding synonymous_variant LOW 615C>T Val205Val
M0208750 BBPOMDPE_00074 74078 3 Gut 0.14 protein_coding missense_variant MODERATE 1090G>A Val364Ile
M0208751 BBPOMDPE_00074 74704 4 Gut 0.18 protein_coding missense_variant MODERATE 464C>T Thr155Met
M0208752 BBPOMDPE_00075 75579 3 Gut 0.14 protein_coding synonymous_variant LOW 150C>T Leu50Leu
M0208753 BBPOMDPE_00076 76516 3 Gut 0.14 protein_coding synonymous_variant LOW 693G>A Val231Val
M0208754 BBPOMDPE_00076 76909 3 Gut 0.14 protein_coding synonymous_variant LOW 300C>T Gly100Gly
M0208755 BBPOMDPE_00076 76915 4 Gut 0.18 protein_coding synonymous_variant LOW 294C>T Phe98Phe
M0208756 BBPOMDPE_00076 76921 3 Gut 0.14 protein_coding missense_variant MODERATE 288A>C Arg96Ser
M0208757 BBPOMDPE_00076 76975 3 Gut 0.14 protein_coding synonymous_variant LOW 234T>A Thr78Thr
M0208758 BBPOMDPE_00071 77316 4 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -4920G>A None
M0208759 BBPOMDPE_00077 77641 3 Gut 0.14 protein_coding missense_variant MODERATE 277G>C Ala93Pro
M0208760 BBPOMDPE_00077 77695 5 Gut 0.23 protein_coding synonymous_variant LOW 223A>C Arg75Arg
M0208761 BBPOMDPE_00077 77842 3 Gut 0.14 protein_coding missense_variant MODERATE 76G>C Glu26Gln
M0208762 BBPOMDPE_00078 78389 6 Gut 0.27 protein_coding missense_variant MODERATE 901A>G Lys301Glu
M0208763 BBPOMDPE_00078 78396 3 Gut 0.14 protein_coding synonymous_variant LOW 894T>C Asp298Asp
M0208764 BBPOMDPE_00078 78789 5 Gut 0.23 protein_coding synonymous_variant LOW 501T>C Phe167Phe
M0208765 BBPOMDPE_00078 78792 4 Gut 0.18 protein_coding synonymous_variant LOW 498C>T Gly166Gly
M0208766 BBPOMDPE_00078 78795 4 Gut 0.18 protein_coding synonymous_variant LOW 495G>T Pro165Pro
M0208767 BBPOMDPE_00078 78801 5 Gut 0.23 protein_coding synonymous_variant LOW 489G>A Gly163Gly
M0208768 BBPOMDPE_00078 78822 4 Gut 0.18 protein_coding synonymous_variant LOW 468A>T Leu156Leu
M0208769 BBPOMDPE_00078 78894 4 Gut 0.18 protein_coding synonymous_variant LOW 396T>C Arg132Arg
M0208770 BBPOMDPE_00078 79022 6 Gut 0.27 protein_coding missense_variant MODERATE 268T>A Tyr90Asn
M0208771 BBPOMDPE_00078 79119 3 Gut 0.14 protein_coding synonymous_variant LOW 171T>A Thr57Thr
M0208772 BBPOMDPE_00078 79150 3 Gut 0.14 protein_coding missense_variant MODERATE 140T>C Leu47Pro
M0208773 BBPOMDPE_00078 79173 3 Gut 0.14 protein_coding synonymous_variant LOW 117T>G Ala39Ala
M0208774 BBPOMDPE_00078 79200 6 Gut 0.27 protein_coding synonymous_variant LOW 90C>T Cys30Cys
M0208775 BBPOMDPE_00078 79215 3 Gut 0.14 protein_coding synonymous_variant LOW 75G>A Gly25Gly
M0208776 BBPOMDPE_00074 79338 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4171C>T None
M0208777 BBPOMDPE_00074 79410 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4243G>T None
M0208778 BBPOMDPE_00074 79411 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4244C>G None
M0208779 BBPOMDPE_00074 79413 6 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -4246A>T None
M0208780 BBPOMDPE_00074 79436 5 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4269A>G None
M0208781 BBPOMDPE_00077 77493 3 Gut 0.14 protein_coding missense_variant MODERATE 425A>G Glu142Gly
M0208782 BBPOMDPE_00074 74207 3 Gut 0.14 protein_coding missense_variant MODERATE 961G>A Val321Ile
M0208783 BBPOMDPE_00074 74727 3 Gut 0.14 protein_coding synonymous_variant LOW 441C>T Gly147Gly
M0208784 BBPOMDPE_00074 74730 3 Gut 0.14 protein_coding synonymous_variant LOW 438T>C Phe146Phe
M0208785 BBPOMDPE_00076 75949 3 Gut 0.14 protein_coding synonymous_variant LOW 1260T>A Ala420Ala
M0208786 BBPOMDPE_00078 78600 3 Gut 0.14 protein_coding missense_variant MODERATE 690C>A Asp230Glu
M0208787 BBPOMDPE_00078 79011 3 Gut 0.14 protein_coding synonymous_variant LOW 279T>G Val93Val
M0208788 BBPOMDPE_00078 79026 4 Gut 0.18 protein_coding synonymous_variant LOW 264A>G Lys88Lys
M0208789 BBPOMDPE_00078 79197 3 Gut 0.14 protein_coding synonymous_variant LOW 93G>A Leu31Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
BBPOMDPE_00005 PHI:8562 srtA 82.6 5.2e-18 1 46 1.0000 1.0000 primates infection sortase reduced virulence
BBPOMDPE_00094 PHI:4040 NisR 93.8 9.8e-118 1 227 1.0000 1.0000 rodents pneumonia; endocarditis; meningitis; arthritis two-component signal-transduction systems reduced virulence
BBPOMDPE_00095 PHI:4039 NisK 91.1 6.6e-116 1 235 0.6438 1.0000 rodents pneumonia; endocarditis; meningitis; arthritis two-component signal-transduction systems reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
BBPOMDPE_00135 1.C.21.1.3 85.7 5.6e-18 2 49 0.9796 0.9608 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.21 The Lacticin 481 (Lacticin 481) Family
BBPOMDPE_00136 1.C.21.1.3 87.8 2.5e-18 2 49 0.9796 0.9608 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.21 The Lacticin 481 (Lacticin 481) Family
BBPOMDPE_00137 1.C.21.1.9 84 6.3e-20 3 52 0.9615 0.9434 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.21 The Lacticin 481 (Lacticin 481) Family
BBPOMDPE_00140 3.A.1.124.4 80.1 3.7e-136 1 301 0.9967 1.2286 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
BBPOMDPE_00143 1.C.21.1.4 91.7 8.2e-22 1 48 1.0000 1.0000 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.21 The Lacticin 481 (Lacticin 481) Family
BBPOMDPE_00146 3.A.1.134.1 93.9 2.5e-127 1 245 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
BBPOMDPE_00147 3.A.1.134.1 93.1 8.09999999999992e-311 1 635 1.0000 2.5918 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily