Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1385
  Reference Plasmid   NZ_MT074415.1
  Reference Plasmid Size   53736
  Reference Plasmid GC Content   0.49
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0208790 FGBKCGKF_00013 10654 3 Gut 0.60 protein_coding missense_variant MODERATE 379A>C Lys127Gln
M0208791 FGBKCGKF_00009 12396 3 Gut 0.60 protein_coding upstream_gene_variant MODIFIER -4222T>C None
M0208792 FGBKCGKF_00022 15139 3 Gut 0.60 protein_coding synonymous_variant LOW 186A>G Gln62Gln
M0208793 FGBKCGKF_00024 15913 3 Gut 0.60 protein_coding upstream_gene_variant MODIFIER -1083A>G None
M0208794 FGBKCGKF_00024 15942 3 Gut 0.60 protein_coding upstream_gene_variant MODIFIER -1054G>A None
M0208795 FGBKCGKF_00023 16140 3 Gut 0.60 protein_coding synonymous_variant LOW 441C>T Ser147Ser
M0208796 FGBKCGKF_00023 16389 3 Gut 0.60 protein_coding synonymous_variant LOW 192T>G Leu64Leu
M0208797 FGBKCGKF_00026 18760 3 Gut 0.60 protein_coding synonymous_variant LOW 153C>A Ala51Ala
M0208798 FGBKCGKF_00026 18763 3 Gut 0.60 protein_coding synonymous_variant LOW 156C>A Ala52Ala
M0208799 FGBKCGKF_00026 18775 3 Gut 0.60 protein_coding synonymous_variant LOW 168T>C Gly56Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
FGBKCGKF_00007 ARO:3003209 98.6 2.72e-101 1 139 1.0000 1.0000 fluoroquinolone antibiotic fosfomycin thiol transferase antibiotic inactivation






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FGBKCGKF_00023 AKA93601.1|GH23 100 1e-123 1 169 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term