Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1399
  Reference Plasmid   NZ_OL790811.1
  Reference Plasmid Size   4077070
  Reference Plasmid GC Content   0.39
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0208905 ABOOBNBD_03210 3413998 8 Gut 0.57 protein_coding missense_variant MODERATE 334G>A Val112Ile
M0208906 ABOOBNBD_03213 3416792 8 Gut 0.57 protein_coding missense_variant MODERATE 683A>T Tyr228Phe
M0208907 ABOOBNBD_03213 3416996 8 Gut 0.57 protein_coding missense_variant MODERATE 479T>C Val160Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
ABOOBNBD_00037 VFG000332 LOS 78.1 3e-142 1 310 0.9936 1.0065 Immune modulation ADP-L-glycero-D-mannoheptose-6-epimerase experiment
ABOOBNBD_00050 VFG048797 Capsule 78.6 1.9e-178 1 388 1.0 1 Immune modulation UDP-glucose 6-dehydrogenase experiment
ABOOBNBD_00128 VFG046465 EF-Tu 80.9 4e-192 1 393 0.9975 0.9975 Adherence elongation factor Tu experiment
ABOOBNBD_00695 VFG049144 AcrAB 75.9 0 1 1044 0.9924 0.9962 Antimicrobial activity/Competitive advantage acriflavine resistance protein B experiment
ABOOBNBD_00891 VFG013418 LOS 78.1 6e-85 1 192 1.0 0.9897 Immune modulation phosphoheptose isomerase experiment
ABOOBNBD_00919 VFG010906 CsrA 83.6 5.8e-21 1 55 0.8871 0.8594 Regulation carbon storage regulator CsrA experiment
ABOOBNBD_00927 VFG018241 AI-2 74.9 2.1e-73 1 171 1.0 0.9942 Biofilm S-ribosylhomocysteinase experiment
ABOOBNBD_01108 VFG000478 Fur 86.4 3.3e-75 1 147 0.9932 0.98 Regulation ferric iron uptake transcriptional regulator experiment
ABOOBNBD_01224 VFG048830 Capsule 85.9 2.5e-233 1 468 1.0 1 Immune modulation NADP-dependent phosphogluconate dehydrogenase experiment
ABOOBNBD_01289 VFG038845 Polar flagella 70.9 2e-96 2 244 0.9605 0.9605 Motility NeuA protein experiment
ABOOBNBD_01315 VFG038380 T6SS 76.2 9.3e-231 1 492 1.0 1 Effector delivery system Type VI secretion system contractile sheath large subunit TssC/VipB experiment
ABOOBNBD_01317 VFG038365 T6SS 89.5 2.4e-93 1 172 1.0 1 Effector delivery system HcpA-like protein experiment
ABOOBNBD_01520 VFG038840 Polar flagella 77.5 3.1e-102 1 244 1.0 1 Motility short chain dehydrogenase/reductase family oxidoreductase experiment
ABOOBNBD_01765 VFG013465 LOS 80.2 6.1e-134 1 283 0.9965 0.9965 Immune modulation 2-dehydro-3-deoxyphosphooctonate aldolase experiment
ABOOBNBD_01794 VFG038365 T6SS 89.5 2.4e-93 1 172 1.0 1 Effector delivery system HcpA-like protein experiment
ABOOBNBD_02156 VFG013346 LOS 70.3 4.2e-117 10 299 0.9635 0.9831 Immune modulation glucosephosphate uridylyltransferase experiment
ABOOBNBD_02294 VFG002319 Flagella 83.5 8.3e-108 1 237 0.9875 0.9875 Motility flagellar biosynthesis sigma factor experiment
ABOOBNBD_02307 VFG002329 Flagella 81.7 2.7e-149 5 332 0.988 0.9939 Motility flagellar motor switch protein G experiment
ABOOBNBD_02309 VFG002331 Flagella 79.8 1.5e-203 1 451 0.9869 0.9934 Motility flagellum-specific ATP synthase FliI experiment
ABOOBNBD_02313 VFG002335 Flagella 79 1.5e-155 1 343 1.0 1.0269 Motility flagellar motor switch protein FliM experiment
ABOOBNBD_02314 VFG002336 Flagella 70.5 1.1e-43 1 136 1.0 0.9855 Motility flagellar motor switch protein FliN experiment
ABOOBNBD_02316 VFG002338 Flagella 78.3 6.8e-100 18 256 0.9336 0.956 Motility flagellar biosynthetic protein FliP experiment
ABOOBNBD_02317 VFG002339 Flagella 77.5 2.1e-32 1 89 1.0 1 Motility flagellar biosynthetic protein FliQ experiment
ABOOBNBD_02323 VFG002344 Flagella 74 9.9e-145 11 368 0.9728 0.9598 Motility flagellar P-ring protein precursor FlgI experiment
ABOOBNBD_02324 VFG002345 Flagella 78.1 1.3e-95 29 247 0.8866 0.9202 Motility flagellar L-ring protein precursor FlgH experiment
ABOOBNBD_02325 VFG002346 Flagella 84.2 8.3e-122 1 260 1.0 1 Motility flagellar basal-body rod protein FlgG experiment
ABOOBNBD_02329 VFG002350 Flagella 77.6 1.7e-54 1 134 1.0 1 Motility flagellar basal-body rod protein FlgC experiment
ABOOBNBD_02335 VFG002356 Flagella 77.9 2.2e-302 1 692 0.9943 1 Motility flagellar biosynthesis protein FlhA experiment
ABOOBNBD_02337 VFG043205 Flagella 74.1 3e-80 7 218 0.9725 0.9907 Motility chemotaxis regulator CheZ experiment
ABOOBNBD_02338 VFG043206 Flagella 83.7 3.6e-57 1 129 1.0 1 Motility chemotaxis regulatory protein CheY experiment
ABOOBNBD_02339 VFG043207 Flagella 76 1.1e-148 1 350 1.0 1.0029 Motility chemotaxis-specific methylesterase CheB experiment
ABOOBNBD_02343 VFG043210 Flagella 81 2.7e-65 8 160 0.9217 0.9273 Motility purine-binding chemotaxis protein CheW experiment
ABOOBNBD_02346 VFG043213 Flagella 70.6 3.5e-113 1 289 1.0 0.9797 Motility flagellar motor protein MotA experiment
ABOOBNBD_02347 VFG002358 Flagella 83.3 2.5e-86 1 186 0.9637 0.9637 Motility flagellar biosynthesis transcription activator FlhC experiment
ABOOBNBD_02348 VFG002359 Flagella 76.2 1.4e-30 1 84 1.0 0.7241 Motility flagellar transcriptional activator FlhD experiment
ABOOBNBD_02413 VFG049018 RcsAB 88.9 1.1e-103 1 213 0.9771 0.9861 Regulation transcriptional regulator RcsB experiment
ABOOBNBD_02720 VFG013412 LOS 75.2 1.7e-134 2 304 0.9902 0.9934 Immune modulation UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase experiment
ABOOBNBD_02890 VFG000477 RpoS 79.9 2.2e-143 1 327 0.9939 0.9909 Regulation RNA polymerase sigma factor RpoS experiment
ABOOBNBD_03276 VFG001855 Hsp60 74.5 9.4e-224 1 548 1.0 0.9982 Adherence Hsp60, 60K heat shock protein HtpB experiment
ABOOBNBD_03450 VFG046465 EF-Tu 80.9 4e-192 1 393 0.9975 0.9975 Adherence elongation factor Tu experiment
ABOOBNBD_03648 VFG038365 T6SS 88.4 1.6e-92 1 172 1.0 1 Effector delivery system HcpA-like protein experiment
ABOOBNBD_00037 VFG013409 LOS 78.4 7.7e-142 1 310 0.9936 1.0065 Immune modulation ADP-L-glycero-D-mannoheptose-6-epimerase prediction
ABOOBNBD_00050 VFG048973 Capsule 78.9 3.7e-178 1 388 1.0 1 Immune modulation UDP-glucose 6-dehydrogenase prediction
ABOOBNBD_00053 VFG037994 Capsule 72.6 1.2e-160 1 376 1.0 1 Immune modulation UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) prediction
ABOOBNBD_00055 VFG038040 Capsule 82 1.7e-155 4 336 0.9765 0.968 Immune modulation polysaccharide biosynthesis protein prediction
ABOOBNBD_00128 VFG046459 EF-Tu 82.4 4.9e-194 1 393 0.9975 0.9975 Adherence elongation factor Tu prediction
ABOOBNBD_00199 VFG007640 Capsular polysaccharide 71.2 4.7e-154 2 369 0.9787 0.984 Immune modulation UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) prediction
ABOOBNBD_00201 VFG007659 Capsular polysaccharide 80.1 2.1e-172 3 353 0.9887 0.9643 Immune modulation dTDP-glucose 4,6-dehydratase prediction
ABOOBNBD_00202 VFG007661 Capsular polysaccharide 74.8 3.1e-129 1 286 0.9761 0.9565 Immune modulation glucose-1-phosphate thymidylyltransferase RfbA prediction
ABOOBNBD_00300 VFG013514 Exopolysaccharide 74.3 1.4e-192 1 444 0.9978 0.9978 Immune modulation phosphoglucosamine mutase prediction
ABOOBNBD_00695 VFG049146 AcrAB 76 0 1 1044 0.9924 0.9962 Antimicrobial activity/Competitive advantage acriflavine resistance protein B prediction
ABOOBNBD_00763 VFG013618 Heme biosynthesis 70.4 1.5e-183 1 426 0.9953 0.9861 Nutritional/Metabolic factor glutamate-1-semialdehyde 2,1-aminomutase prediction
ABOOBNBD_00781 VFG044280 Proteobactin 99.4 3.3e-189 1 360 1.0 1 Nutritional/Metabolic factor iron ABC transporter permease prediction
ABOOBNBD_00782 VFG044281 Proteobactin 99.2 5e-142 1 264 1.0 1 Nutritional/Metabolic factor ABC transporter ATP-binding protein prediction
ABOOBNBD_00783 VFG044282 Proteobactin 99.6 1.1e-158 1 278 1.0 1 Nutritional/Metabolic factor CoA ester lyase prediction
ABOOBNBD_00784 VFG044283 Proteobactin 98.9 0 1 626 1.0 0.9984 Nutritional/Metabolic factor IucA/IucC family siderophore biosynthesis protein prediction
ABOOBNBD_00785 VFG044284 Proteobactin 99.7 0 1 703 1.0 1 Nutritional/Metabolic factor TonB-dependent siderophore receptor prediction
ABOOBNBD_00786 VFG044285 Proteobactin 98.9 2.9e-278 1 467 1.0 1 Nutritional/Metabolic factor Y4yA family PLP-dependent enzyme prediction
ABOOBNBD_00787 VFG044286 Proteobactin 99.4 4.2e-194 1 338 1.0 1 Nutritional/Metabolic factor cysteine synthase family protein prediction
ABOOBNBD_00788 VFG044287 Proteobactin 98.4 9.2e-230 1 385 1.0 1 Nutritional/Metabolic factor NAD/NADP-dependent octopine/nopaline dehydrogenase family protein prediction
ABOOBNBD_00789 VFG044288 Proteobactin 99.8 1.2e-219 1 403 1.0 1 Nutritional/Metabolic factor MFS transporter prediction
ABOOBNBD_00790 VFG044289 Proteobactin 99.7 1.5e-221 1 375 1.0 1 Nutritional/Metabolic factor ABC transporter substrate-binding protein prediction
ABOOBNBD_00791 VFG044290 Proteobactin 100 9.1e-85 1 148 1.0 1 Nutritional/Metabolic factor ParB N-terminal domain-containing protein prediction
ABOOBNBD_00805 VFG042621 Proteus-like (MR/P) fimbriae, mannose resistant (biofilm formation) 78.3 3e-71 1 175 1.0 1 Adherence MR/P fimbria major subunit MrpA prediction
ABOOBNBD_00807 VFG042624 Proteus-like (MR/P) fimbriae, mannose resistant (biofilm formation) 74.6 7.4e-111 1 252 1.0 1 Adherence MR/P fimbria assembly chaperone MrpD prediction
ABOOBNBD_00813 VFG042620 Proteus-like (MR/P) fimbriae, mannose resistant (biofilm formation) 100 3e-109 1 188 1.0 1 Adherence phase variation DNA invertase MrpI prediction
ABOOBNBD_00814 VFG042621 Proteus-like (MR/P) fimbriae, mannose resistant (biofilm formation) 100 2.7e-91 1 175 1.0 1 Adherence MR/P fimbria major subunit MrpA prediction
ABOOBNBD_00815 VFG042622 Proteus-like (MR/P) fimbriae, mannose resistant (biofilm formation) 100 1.3e-101 5 186 0.9785 1 Adherence MR/P fimbria assembly terminator MrpB prediction
ABOOBNBD_00816 VFG042623 Proteus-like (MR/P) fimbriae, mannose resistant (biofilm formation) 100 0 1 871 1.0 1 Adherence MR/P fimbria usher protein MrpC prediction
ABOOBNBD_00817 VFG042624 Proteus-like (MR/P) fimbriae, mannose resistant (biofilm formation) 100 3.6e-142 1 252 1.0 1 Adherence MR/P fimbria assembly chaperone MrpD prediction
ABOOBNBD_00818 VFG042625 Proteus-like (MR/P) fimbriae, mannose resistant (biofilm formation) 100 1.9e-100 1 181 1.0 1 Adherence fimbrial protein prediction
ABOOBNBD_00819 VFG042626 Proteus-like (MR/P) fimbriae, mannose resistant (biofilm formation) 100 3e-89 1 161 1.0 1 Adherence fimbrial protein prediction
ABOOBNBD_00820 VFG042627 Proteus-like (MR/P) fimbriae, mannose resistant (biofilm formation) 100 1.5e-100 1 182 1.0 1 Adherence type 1 fimbrial protein prediction
ABOOBNBD_00821 VFG042628 Proteus-like (MR/P) fimbriae, mannose resistant (biofilm formation) 100 1.5e-157 1 275 1.0 1 Adherence MR/P fimbria adhesin subunit MrpH prediction
ABOOBNBD_00822 VFG042629 Proteus-like (MR/P) fimbriae, mannose resistant (biofilm formation) 100 1.8e-58 1 107 1.0 1 Adherence transcriptional regulator MrpJ prediction
ABOOBNBD_00830 VFG043807 ZapA 100 1.3e-292 1 491 1.0 1 Exotoxin serralysin family metalloprotease prediction
ABOOBNBD_00891 VFG013421 LOS 78.1 4.5e-84 1 192 1.0 0.9897 Immune modulation phosphoheptose isomerase prediction
ABOOBNBD_00919 VFG010906 CsrA 83.6 4.3e-20 1 55 0.8871 0.8594 Regulation carbon storage regulator CsrA prediction
ABOOBNBD_00927 VFG018243 AI-2 77.8 2e-75 1 171 1.0 0.9942 Biofilm S-ribosylhomocysteinase prediction
ABOOBNBD_00945 VFG049189 T6SS-II 83.9 0 1 857 0.9988 1 Effector delivery system ATP-dependent chaperone ClpB prediction
ABOOBNBD_01099 VFG042615 Uroepithelial cell adhesin (UCA) 94.1 4.7e-48 1 101 1.0 1 Adherence helix-turn-helix transcriptional regulator prediction
ABOOBNBD_01100 VFG042616 Uroepithelial cell adhesin (UCA) 99.2 1.1e-205 1 360 1.0 1 Adherence type 1 fimbrial protein prediction
ABOOBNBD_01101 VFG042617 Uroepithelial cell adhesin (UCA) 99.1 0 1 844 1.0 1 Adherence fimbrial biogenesis outer membrane usher protein prediction
ABOOBNBD_01102 VFG042618 Uroepithelial cell adhesin (UCA) 97.5 2.5e-132 1 241 1.0 1 Adherence fimbria/pilus periplasmic chaperone prediction
ABOOBNBD_01103 VFG042619 Uroepithelial cell adhesin (UCA) 95 5.7e-89 1 181 1.0 1 Adherence uroepithelial cell adherence major pilin UcaA prediction
ABOOBNBD_01108 VFG000478 Fur 86.4 2.5e-74 1 147 0.9932 0.98 Regulation ferric iron uptake transcriptional regulator prediction
ABOOBNBD_01224 VFG048844 Capsule 85.9 3.7e-233 1 468 1.0 1 Immune modulation NADP-dependent phosphogluconate dehydrogenase prediction
ABOOBNBD_01289 VFG038845 Polar flagella 70.9 1.5e-95 2 244 0.9605 0.9605 Motility NeuA protein prediction
ABOOBNBD_01315 VFG038380 T6SS 76.2 6.9e-230 1 492 1.0 1 Effector delivery system Type VI secretion system contractile sheath large subunit TssC/VipB prediction
ABOOBNBD_01317 VFG038370 T6SS 90.1 4.7e-93 1 172 1.0 1 Effector delivery system hemolysin co-regulated protein prediction
ABOOBNBD_01450 VFG042615 Uroepithelial cell adhesin (UCA) 73.3 9.7e-38 1 101 1.0 1 Adherence helix-turn-helix transcriptional regulator prediction
ABOOBNBD_01520 VFG038840 Polar flagella 77.5 2.3e-101 1 244 1.0 1 Motility short chain dehydrogenase/reductase family oxidoreductase prediction
ABOOBNBD_01765 VFG013466 LOS 80.6 9.2e-134 1 283 0.9965 0.9965 Immune modulation 2-dehydro-3-deoxyphosphooctonate aldolase prediction
ABOOBNBD_01794 VFG038370 T6SS 90.1 4.7e-93 1 172 1.0 1 Effector delivery system hemolysin co-regulated protein prediction
ABOOBNBD_02094 VFG044291 HmuR2 99.9 0 1 680 1.0 1 Nutritional/Metabolic factor TonB-dependent hemoglobin/transferrin/lactoferrin family receptor prediction
ABOOBNBD_02095 VFG044292 HmuR2 99.4 3.4e-199 1 349 1.0 1 Nutritional/Metabolic factor hemin-degrading factor prediction
ABOOBNBD_02096 VFG044293 HmuR2 100 3.4e-146 1 271 1.0 1 Nutritional/Metabolic factor hemin ABC transporter substrate-binding protein prediction
ABOOBNBD_02097 VFG044294 HmuR2 100 8.1e-174 9 334 0.976 1 Nutritional/Metabolic factor iron ABC transporter permease prediction
ABOOBNBD_02098 VFG044295 HmuR2 100 2.2e-150 1 264 1.0 1 Nutritional/Metabolic factor heme ABC transporter ATP-binding protein prediction
ABOOBNBD_02294 VFG002319 Flagella 83.5 6.2e-107 1 237 0.9875 0.9875 Motility flagellar biosynthesis sigma factor prediction
ABOOBNBD_02307 VFG002329 Flagella 81.7 2e-148 5 332 0.988 0.9939 Motility flagellar motor switch protein G prediction
ABOOBNBD_02309 VFG002331 Flagella 79.8 1.1e-202 1 451 0.9869 0.9934 Motility flagellum-specific ATP synthase FliI prediction
ABOOBNBD_02313 VFG002335 Flagella 79 1.1e-154 1 343 1.0 1.0269 Motility flagellar motor switch protein FliM prediction
ABOOBNBD_02316 VFG002338 Flagella 78.3 5.1e-99 18 256 0.9336 0.956 Motility flagellar biosynthetic protein FliP prediction
ABOOBNBD_02317 VFG002339 Flagella 77.5 1.6e-31 1 89 1.0 1 Motility flagellar biosynthetic protein FliQ prediction
ABOOBNBD_02323 VFG043029 Peritrichous flagella 76.5 1.3e-148 11 368 0.9728 0.9808 Motility flagellar biosynthesis protein FlgA prediction
ABOOBNBD_02324 VFG002345 Flagella 78.1 9.5e-95 29 247 0.8866 0.9202 Motility flagellar L-ring protein precursor FlgH prediction
ABOOBNBD_02325 VFG003433 Flagella 83.5 1.6e-121 1 260 1.0 1 Motility flagellar basal-body rod protein FlgG prediction
ABOOBNBD_02329 VFG002679 Flagella 77.6 9.8e-54 1 134 1.0 1 Motility flagellar basal-body rod protein FlgC prediction
ABOOBNBD_02335 VFG023690 Flagella 78 4.3e-302 1 692 0.9943 1 Motility flagellar biosynthesis protein FlhA prediction
ABOOBNBD_02337 VFG043205 Flagella 74.1 2.2e-79 7 218 0.9725 0.9907 Motility chemotaxis regulator CheZ prediction
ABOOBNBD_02338 VFG043206 Flagella 83.7 2.7e-56 1 129 1.0 1 Motility chemotaxis regulatory protein CheY prediction
ABOOBNBD_02339 VFG043038 Peritrichous flagella 76.6 7.3e-149 1 350 1.0 1.0029 Motility chemotaxis response regulator protein-glutamate methylesterase prediction
ABOOBNBD_02343 VFG043210 Flagella 81 2e-64 8 160 0.9217 0.9273 Motility purine-binding chemotaxis protein CheW prediction
ABOOBNBD_02346 VFG043213 Flagella 70.6 2.6e-112 1 289 1.0 0.9797 Motility flagellar motor protein MotA prediction
ABOOBNBD_02347 VFG002687 Flagella 82.8 1.1e-85 1 186 0.9637 0.9637 Motility flagellar biosynthesis transcription activator FlhC prediction
ABOOBNBD_02348 VFG002359 Flagella 76.2 1.1e-29 1 84 1.0 0.7241 Motility flagellar transcriptional activator FlhD prediction
ABOOBNBD_02413 VFG049010 RcsAB 90.5 3.8e-103 1 210 0.9633 0.9722 Regulation transcriptional regulator RcsB prediction
ABOOBNBD_02577 VFG042610 PMF pili 100 4.2e-95 1 184 1.0 1 Adherence fimbrial protein prediction
ABOOBNBD_02578 VFG042611 PMF pili 100 0 1 828 1.0 1 Adherence fimbria/pilus outer membrane usher protein prediction
ABOOBNBD_02579 VFG042612 PMF pili 100 1.8e-144 1 254 1.0 1 Adherence molecular chaperone prediction
ABOOBNBD_02580 VFG042613 PMF pili 99.4 7.5e-210 1 357 1.0 1 Adherence fimbrial protein prediction
ABOOBNBD_02581 VFG042614 PMF pili 99.5 1.2e-97 1 182 1.0 1 Adherence type 1 fimbrial protein prediction
ABOOBNBD_02713 VFG042330 HpmA-HpmB 99.6 0 1 561 1.0 1 Effector delivery system hemolysin secretion/activation protein HpmB prediction
ABOOBNBD_02714 VFG042331 HpmA-HpmB 99.6 0 1 1577 1.0 1 Effector delivery system calcium-independent hemolysin HpmA prediction
ABOOBNBD_02720 VFG013417 LOS 73.7 6.8e-135 2 305 0.9935 0.9967 Immune modulation UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase prediction
ABOOBNBD_02775 VFG042332 AipA 98.8 4e-133 1 251 1.0 1 Effector delivery system trimeric autotransporter adhesin AipA prediction
ABOOBNBD_02890 VFG000477 RpoS 79.9 1.6e-142 1 327 0.9939 0.9909 Regulation RNA polymerase sigma factor RpoS prediction
ABOOBNBD_03001 VFG042333 Proteus toxic agglutinin (Pta) 99.5 0 1 1084 1.0 1 Effector delivery system autotransporter Pta prediction
ABOOBNBD_03017 VFG013435 LOS 70.4 8e-191 8 473 0.9831 0.979 Immune modulation ADP-heptose synthase prediction
ABOOBNBD_03276 VFG045692 Hsp60 73.5 2.4e-223 1 548 1.0 0.9946 Adherence Hsp60, 60K heat shock protein HtpB prediction
ABOOBNBD_03407 VFG013531 Exopolysaccharide 77.4 3.3e-257 1 548 1.0 0.9982 Immune modulation glucose-6-phosphate isomerase prediction
ABOOBNBD_03432 VFG013200 Heme biosynthesis 77.7 2.8e-164 1 354 0.9916 1 Nutritional/Metabolic factor uroporphyrinogen decarboxylase prediction
ABOOBNBD_03450 VFG046459 EF-Tu 82.4 4.9e-194 1 393 0.9975 0.9975 Adherence elongation factor Tu prediction
ABOOBNBD_03648 VFG038370 T6SS 89 3.1e-92 1 172 1.0 1 Effector delivery system hemolysin co-regulated protein prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
ABOOBNBD_00063 Hydrogen Peroxide (H2O2) [class: Peroxides], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides] 79.2 2.6e-214 1 452 0.9762 0.9891 experiment
ABOOBNBD_00064 Hydrogen Peroxide (H2O2) [class: Peroxides], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides] 87 6.4e-113 1 230 0.9914 0.9914 experiment
ABOOBNBD_00077 Antimony (Sb), Arsenic (As), Glycerol [class: Alcohol] 70.9 2.2e-112 1 268 0.9889 0.9537 experiment
ABOOBNBD_00107 Hydrogen Peroxide (H2O2) [class: Peroxides], Sodium Deoxycholate (SDC) [class: Acid], Acriflavine [class: Acridine], Rhodamine 6G [class: Xanthene], Ethidium Bromide [class: Phenanthridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate] 81.9 6.6e-142 1 298 0.9770 0.9770 experiment
ABOOBNBD_00436 Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate] 75 9.5e-40 1 104 1.0000 0.9905 experiment
ABOOBNBD_00695 Acriflavine [class: Acridine], Phenol [class: Phenolic compounds], Triclosan [class: Phenolic compounds], p-xylene [class: Aromatic hydrocarbons], Cyclohexane [class: Cycloalkane], Pentane [class: Alkane] 76.1 0 1 1044 0.9933 0.9962 experiment
ABOOBNBD_00823 Triton X-100 [class: Polyethylene glycol] 71.2 9.4e-213 2 519 0.9885 0.9719 experiment
ABOOBNBD_00957 Phenylmercury Acetate [class: Organo-mercury], 2-Chlorophenylhydrazine [class: Hydrazine], Carbonylcyanide m-chlorophenyl hydrazone (CCCP) [class: Hydrazone] 72.7 2e-223 3 504 0.9941 0.9805 experiment
ABOOBNBD_01000 Cobalt (Co), Magnesium (Mg) 84.1 4.3e-138 1 289 0.9898 0.9932 experiment
ABOOBNBD_01167 Tungsten (W), Molybdenum (Mo) 76.2 3e-94 1 227 0.9870 0.9913 experiment
ABOOBNBD_01708 Iron (Fe), Manganese (Mn) 81.7 2.9e-121 1 279 0.9208 0.9490 experiment
ABOOBNBD_01709 Iron (Fe), Manganese (Mn) 77.4 7.4e-130 6 293 0.9763 0.9730 experiment
ABOOBNBD_01710 Iron (Fe), Manganese (Mn) 75.4 4.4e-130 10 302 0.9702 0.9421 experiment
ABOOBNBD_01793 Chromium (Cr), Tellurium (Te), Selenium (Se) 75.1 4.3e-142 1 329 0.9792 0.9347 experiment
ABOOBNBD_01806 Zinc (Zn) 78.1 5.2e-103 1 256 0.9808 0.9808 experiment
ABOOBNBD_01807 Zinc (Zn) 74.7 3.1e-102 1 237 0.9834 0.9442 experiment
ABOOBNBD_01815 Sodium Deoxycholate (SDC) [class: Acid], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Spermidine [class: Polyamines] 70.6 1.1e-38 2 110 0.9909 1.0000 experiment
ABOOBNBD_01830 Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides] 71 1e-95 1 252 0.9844 0.9730 experiment
ABOOBNBD_02050 Triclosan [class: Phenolic compounds] 86.3 1e-130 1 262 1.0000 1.0000 experiment
ABOOBNBD_02064 Chlorhexidine [class: Biguanides] 78.6 2e-91 1 192 1.0000 0.8571 experiment
ABOOBNBD_02064 Selenium (Se), Hydrogen Peroxide (H2O2) [class: Peroxides] 78.6 2e-91 1 192 1.0000 0.8571 experiment
ABOOBNBD_02074 Hydrochloric acid (HCl) [class: Acid] 76.7 3.3e-218 1 508 0.9865 0.9980 experiment
ABOOBNBD_02181 Acriflavine [class: Acridine], Ethidium Bromide [class: Phenanthridine], Methyl Viologen [class: Paraquat], Chlorhexidine [class: Biguanides] 73.6 1.1e-38 1 110 1.0000 1.0000 experiment
ABOOBNBD_02260 Zinc (Zn) 75.5 0 6 1033 0.9895 0.9923 experiment
ABOOBNBD_02261 Sodium Deoxycholate (SDC) [class: Acid] 72.8 0 1 1018 0.9912 0.9932 experiment
ABOOBNBD_02367 Sodium Deoxycholate (SDC) [class: Acid] 72 1.9e-160 9 397 0.9677 0.9534 experiment
ABOOBNBD_02803 Arsenic (As), Antimony (Sb) 82.4 4.6e-197 1 426 0.9930 0.9930 experiment
ABOOBNBD_02828 Copper (Cu) 72.7 0 140 984 0.8587 1.0132 experiment
ABOOBNBD_02890 Hydrochloric acid (HCl) [class: Acid], Sodium hydroxide (NaOH) [class: Base] 79.9 5.8e-144 1 327 1.0000 0.9970 experiment
ABOOBNBD_03050 Tellurium (Te) 81.7 3.5e-88 1 191 1.0000 1.0000 experiment
ABOOBNBD_03051 Tellurium (Te) 92.2 6.7e-100 1 192 1.0000 1.0000 experiment
ABOOBNBD_03052 Tellurium (Te) 87.6 3e-167 1 338 0.9912 0.9769 experiment
ABOOBNBD_03053 Tellurium (Te) 81.4 5.4e-52 1 118 0.7815 0.9672 experiment
ABOOBNBD_03055 Tellurium (Te) 73.7 1.2e-83 1 194 1.0000 1.0052 experiment
ABOOBNBD_03131 Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Acriflavine [class: Acridine], Chlorhexidine [class: Biguanides], Pyronin Y [class: Xanthene], Rhodamine 6G [class: Xanthene], Methyl Viologen [class: Paraquat], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], 4,6-diamidino-2-phenylindole (DAPI) [class: Diamindine], Acridine Orange [class: Acridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Sodium Deoxycholate (SDC) [class: Acid], Crystal Violet [class: Triarylmethane], Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Dequalinium [class: Quaternary Ammonium Compounds (QACs)] 100 1.1e-60 1 115 1.0000 1.0000 experiment
ABOOBNBD_03360 Vanadium (V), Triclosan [class: Phenolic compounds] 77.1 0 1 1021 0.9961 0.9922 experiment
ABOOBNBD_03550 Arsenic (As) 77.2 4.9e-157 1 346 1.0000 1.0000 experiment
ABOOBNBD_03551 Arsenic (As) 85.3 4.8e-151 1 319 1.0000 1.0000 experiment
ABOOBNBD_03552 Arsenic (As) 82.9 8.2e-137 9 300 0.9767 0.9899 experiment
ABOOBNBD_03553 Arsenic (As) 92.1 2.1e-136 6 258 0.9806 0.9844 experiment
ABOOBNBD_03670 Zinc (Zn), Tellurium (Te) 72.3 4.3e-202 14 509 0.9746 1.0000 experiment
ABOOBNBD_03694 Selenium (Se), Hydrogen Peroxide (H2O2) [class: Peroxides] 77.2 1.9e-95 1 206 0.9952 1.0000 experiment
ABOOBNBD_03697 Sodium Glycocholate [class: Acid], Sodium acetate [class: Acetate] 80.3 2.1e-234 20 551 0.9655 0.9690 experiment
ABOOBNBD_00063 Hydrogen Peroxide (H2O2) [class: Peroxides], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides] 80.8 1.3e-214 1 452 0.9762 0.9891 prediction
ABOOBNBD_00064 Hydrogen Peroxide (H2O2) [class: Peroxides], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides] 100 5.4e-129 1 232 1.0000 1.0000 prediction
ABOOBNBD_00077 Antimony (Sb), Arsenic (As), Glycerol [class: Alcohol] 72.4 1.1e-112 1 271 1.0037 0.9645 prediction
ABOOBNBD_00107 Hydrogen Peroxide (H2O2) [class: Peroxides], Sodium Deoxycholate (SDC) [class: Acid], Acriflavine [class: Acridine], Rhodamine 6G [class: Xanthene], Ethidium Bromide [class: Phenanthridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate] 84.2 6e-144 1 298 0.9770 0.9770 prediction
ABOOBNBD_00158 Zinc (Zn) 75.2 1.4e-55 1 137 1.0000 0.9580 prediction
ABOOBNBD_00436 Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Cetylpyridinium Chloride (CPC) [class: Quaternary Ammonium Compounds (QACs)], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Ethidium Bromide [class: Phenanthridine], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate] 75 5.7e-38 1 104 1.0000 0.9905 prediction
ABOOBNBD_00695 Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides], Triclosan [class: Phenolic compounds], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Acriflavine [class: Acridine], Rhodamine 6G [class: Xanthene] 77.4 0 1 1044 0.9924 0.9962 prediction
ABOOBNBD_00800 Palmitic acid [class: Free Fatty Acids] 93.1 1e-69 1 145 1.0000 1.0000 prediction
ABOOBNBD_00823 Triton X-100 [class: Polyethylene glycol] 100 3.3e-291 1 524 1.0000 1.0000 prediction
ABOOBNBD_00928 Cobalt (Co), Magnesium (Mg) 72.1 3.7e-176 1 423 0.9976 0.9883 prediction
ABOOBNBD_00957 Phenylmercury Acetate [class: Organo-mercury], 2-Chlorophenylhydrazine [class: Hydrazine], Carbonylcyanide m-chlorophenyl hydrazone (CCCP) [class: Hydrazone] 74.7 1.6e-223 3 504 0.9941 0.9805 prediction
ABOOBNBD_00962 Carbonyl cyanide 3-chlorophenylhydrazone (CCCP) [class: Hydrazone] 83.6 3.2e-73 1 171 0.9771 1.0000 prediction
ABOOBNBD_01000 Cobalt (Co), Magnesium (Mg) 100 2.2e-164 1 293 1.0000 1.0000 prediction
ABOOBNBD_01167 Tungsten (W), Molybdenum (Mo) 86.3 1.1e-105 1 227 0.9870 0.9913 prediction
ABOOBNBD_01545 Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides] 73.1 5.4e-94 1 223 0.9955 1.0000 prediction
ABOOBNBD_01688 Iron (Fe), Copper (Cu), Manganese (Mn) 77.8 1.3e-71 1 167 1.0000 1.0000 prediction
ABOOBNBD_01707 Iron (Fe), Manganese (Mn) 100 5.7e-149 1 285 1.0000 1.0000 prediction
ABOOBNBD_01708 Iron (Fe), Manganese (Mn) 100 1.5e-158 1 303 1.0000 1.0000 prediction
ABOOBNBD_01709 Iron (Fe), Manganese (Mn) 100 1.4e-169 1 295 1.0000 1.0000 prediction
ABOOBNBD_01710 Iron (Fe), Manganese (Mn) 93.3 8.2e-154 18 302 0.9437 1.0000 prediction
ABOOBNBD_01793 Chromium (Cr), Tellurium (Te), Selenium (Se) 77.2 9.5e-143 1 329 0.9792 0.9347 prediction
ABOOBNBD_01806 Zinc (Zn) 80.4 6.7e-104 1 255 0.9770 0.9770 prediction
ABOOBNBD_01807 Zinc (Zn) 76.4 2e-102 1 237 0.9834 0.9442 prediction
ABOOBNBD_01814 Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Sodium Deoxycholate (SDC) [class: Acid], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides], Triclosan [class: Phenolic compounds], Methyl Viologen [class: Paraquat], Hydrogen Peroxide (H2O2) [class: Peroxides] 78.5 2.6e-36 1 107 0.7329 0.8560 prediction
ABOOBNBD_01815 Sodium Deoxycholate (SDC) [class: Acid], Sodium Dodecyl Sulfate (SDS) [class: Organo-sulfate], Spermidine [class: Polyamines] 100 3.2e-55 1 110 1.0000 1.0000 prediction
ABOOBNBD_01830 Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides] 72.9 3.4e-100 1 255 0.9961 0.9922 prediction
ABOOBNBD_02050 Triclosan [class: Phenolic compounds] 100 4.6e-145 1 262 1.0000 1.0000 prediction
ABOOBNBD_02064 Hydrogen Peroxide (H2O2) [class: Peroxides] 84.4 3.4e-97 1 192 1.0000 1.0000 prediction
ABOOBNBD_02074 Hydrochloric acid (HCl) [class: Acid] 100 2.1e-282 1 517 1.0000 1.0000 prediction
ABOOBNBD_02181 Acriflavine [class: Acridine], Ethidium Bromide [class: Phenanthridine], Methyl Viologen [class: Paraquat], Chlorhexidine [class: Biguanides] 73.6 1.3e-37 1 110 1.0000 1.0000 prediction
ABOOBNBD_02260 Zinc (Zn) 76 0 6 1033 0.9895 0.9923 prediction
ABOOBNBD_02261 Sodium Deoxycholate (SDC) [class: Acid] 73.2 0 1 1018 0.9912 0.9932 prediction
ABOOBNBD_02367 Sodium Deoxycholate (SDC) [class: Acid] 72.8 1.8e-164 9 402 0.9801 0.9471 prediction
ABOOBNBD_02715 Copper (Cu) 70.2 0 7 826 0.9903 0.9751 prediction
ABOOBNBD_02803 Arsenic (As), Antimony (Sb) 83.1 2.2e-197 1 427 0.9953 0.9953 prediction
ABOOBNBD_02827 Copper (Cu) 72.7 1.2e-51 1 132 0.9925 0.9706 prediction
ABOOBNBD_02828 Copper (Cu), Silver (Ag) 73.1 0 140 984 0.8587 1.0132 prediction
ABOOBNBD_02890 Hydrochloric acid (HCl) [class: Acid], Sodium hydroxide (NaOH) [class: Base] 80.5 3.2e-143 1 327 1.0000 0.9970 prediction
ABOOBNBD_02908 Cetrimide (CTM) [class: Quaternary Ammonium Compounds (QACs)], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Hoechst 33342 [class: Bisbenzimide], Ethidium Bromide [class: Phenanthridine], Rhodamine 6G [class: Xanthene], Acriflavine [class: Acridine], Tetraphenylphosphonium (TPP) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides], Crystal Violet [class: Triarylmethane], Dequalinium [class: Quaternary Ammonium Compounds (QACs)], Pentamidine [class: Diamidine], Pyronin Y [class: Xanthene] 100 7e-230 1 393 1.0000 1.0000 prediction
ABOOBNBD_02997 Cobalt (Co), Magnesium (Mg) 100 5.9e-66 1 125 1.0000 1.0000 prediction
ABOOBNBD_03050 Tellurium (Te) 83.8 2.5e-87 1 191 1.0000 1.0000 prediction
ABOOBNBD_03051 Tellurium (Te) 100 1e-104 1 192 1.0000 1.0000 prediction
ABOOBNBD_03052 Tellurium (Te) 88.5 1.3e-168 1 338 0.9912 0.9769 prediction
ABOOBNBD_03053 Tellurium (Te) 82.1 3.6e-65 1 151 1.0000 1.0000 prediction
ABOOBNBD_03055 Tellurium (Te) 74.7 6.4e-83 1 194 1.0000 1.0052 prediction
ABOOBNBD_03280 Copper (Cu) 83.1 2.3e-168 1 397 0.9002 0.7972 prediction
ABOOBNBD_03360 Vanadium (V), Triclosan [class: Phenolic compounds] 77.3 0 1 1021 0.9961 0.9922 prediction
ABOOBNBD_03412 Sodium acetate [class: Acetate] 72.6 5.3e-107 8 277 0.9712 0.9818 prediction
ABOOBNBD_03550 Arsenic (As) 81.2 1.3e-163 1 346 1.0000 1.0000 prediction
ABOOBNBD_03551 Arsenic (As) 91.2 5.3e-159 1 317 0.9937 0.9969 prediction
ABOOBNBD_03552 Arsenic (As) 88.3 5.7e-139 17 299 0.9433 0.9659 prediction
ABOOBNBD_03553 Arsenic (As) 99.2 4.9e-147 1 258 1.0000 1.0000 prediction
ABOOBNBD_03670 Zinc (Zn), Tellurium (Te) 78.1 1.6e-221 1 509 1.0000 1.0000 prediction
ABOOBNBD_03694 Selenium (Se), Hydrogen Peroxide (H2O2) [class: Peroxides] 79.6 6.1e-100 1 206 0.9952 0.9952 prediction
ABOOBNBD_03697 Copper (Cu), Sodium acetate [class: Acetate] 79.5 1.7e-242 1 551 1.0018 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
ABOOBNBD_00004 ARO:3003306 84.5 0 1 804 1.0000 1.0000 fluoroquinolone antibiotic fluoroquinolone resistant gyrB antibiotic target alteration
ABOOBNBD_00050 ARO:3003577 76 7.52e-220 1 388 1.0000 1.0000 peptide antibiotic pmr phosphoethanolamine transferase antibiotic target alteration
ABOOBNBD_00063 ARO:3000830 79.2 1.29e-268 1 452 0.9762 0.9891 aminoglycoside antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
ABOOBNBD_00128 ARO:3003368 94.9 3.83e-278 1 394 1.0000 1.0000 elfamycin antibiotic elfamycin resistant EF-Tu antibiotic target alteration
ABOOBNBD_00131 ARO:3003930 70.6 5.12e-46 1 102 0.9903 0.9903 tetracycline antibiotic tetracycline-resistant ribosomal protection protein antibiotic target protection
ABOOBNBD_00218 ARO:3003900 77.4 0 1 836 0.9699 0.9894 phosphonic acid antibiotic antibiotic-resistant cya adenylate cyclase antibiotic target alteration
ABOOBNBD_00299 ARO:3003386 73.7 6.1e-147 1 278 0.9929 0.9858 sulfonamide antibiotic sulfonamide resistant dihydropteroate synthase folP antibiotic target alteration
ABOOBNBD_00443 ARO:3003889 85.7 8.63e-297 1 448 0.9956 0.9912 phosphonic acid antibiotic antibiotic-resistant GlpT antibiotic target alteration
ABOOBNBD_00509 ARO:3005041 80 3.32e-150 7 266 0.9630 0.9665 oxazolidinone antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic efflux
ABOOBNBD_00515 ARO:3003775 85.1 2.75e-261 1 416 0.9905 0.9928 phosphonic acid antibiotic antibiotic-resistant murA transferase antibiotic target alteration
ABOOBNBD_00695 ARO:3000216 76.1 0 1 1044 0.9933 0.9962 fluoroquinolone antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
ABOOBNBD_00919 ARO:3005069 93 1.47e-31 1 57 0.9194 0.9344 fluoroquinolone antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
ABOOBNBD_00957 ARO:3004597 72.7 1.7e-279 3 504 0.9941 0.9805 macrolide antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
ABOOBNBD_01285 ARO:3003950 80.3 0 2 581 0.9983 0.9966 nitroimidazole antibiotic ATP-binding cassette (ABC) antibiotic efflux pump antibiotic efflux
ABOOBNBD_01295 ARO:3004657 96.8 7.24e-160 1 217 1.0000 1.0000 phenicol antibiotic chloramphenicol acetyltransferase (CAT) antibiotic inactivation
ABOOBNBD_01359 ARO:3005044 71.1 3.6e-175 1 360 0.9945 0.9626 peptide antibiotic General Bacterial Porin with reduced permeability to peptide antibiotics reduced permeability to antibiotic
ABOOBNBD_01520 ARO:3004049 85.7 7.76e-141 1 244 1.0000 1.0000 disinfecting agents and antiseptics antibiotic resistant fabG antibiotic target alteration
ABOOBNBD_01727 ARO:3003578 74.7 3.4e-170 7 314 0.9448 0.9565 peptide antibiotic pmr phosphoethanolamine transferase antibiotic target alteration
ABOOBNBD_01776 ARO:3001216 73.4 4.95e-213 1 398 0.9950 0.9900 fluoroquinolone antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
ABOOBNBD_01814 ARO:3004580 72.9 3.69e-44 1 107 0.7329 0.8917 macrolide antibiotic small multidrug resistance (SMR) antibiotic efflux pump antibiotic efflux
ABOOBNBD_01815 ARO:3004583 70.1 3.62e-49 4 110 0.9727 0.9817 macrolide antibiotic small multidrug resistance (SMR) antibiotic efflux pump antibiotic efflux
ABOOBNBD_02050 ARO:3004045 86.3 1.82e-164 1 262 1.0000 1.0000 disinfecting agents and antiseptics antibiotic resistant fabI antibiotic target alteration
ABOOBNBD_02154 ARO:3000676 77 8.96e-62 1 134 1.0075 0.9854 macrolide antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
ABOOBNBD_02260 ARO:3000793 75.9 0 6 1028 0.9808 0.9837 aminocoumarin antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
ABOOBNBD_02261 ARO:3000794 72.1 0 1 1018 0.9912 0.9932 aminocoumarin antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
ABOOBNBD_02367 ARO:3001329 72 5.96e-202 9 397 0.9677 0.9534 phosphonic acid antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
ABOOBNBD_02415 ARO:3003926 84.3 0 1 853 0.9726 0.9715 fluoroquinolone antibiotic fluoroquinolone resistant gyrA antibiotic target alteration
ABOOBNBD_02529 ARO:3003899 77.9 4.44999986552752e-318 1 575 1.0000 1.0000 phosphonic acid antibiotic antibiotic-resistant ptsI phosphotransferase antibiotic target alteration
ABOOBNBD_02732 ARO:3007421 76.4 0 18 598 0.9716 0.9881 cephalosporin Penicillin-binding protein mutations conferring resistance to beta-lactam antibiotics antibiotic target alteration
ABOOBNBD_03005 ARO:3003316 81.8 0 1 631 1.0000 1.0016 fluoroquinolone antibiotic fluoroquinolone resistant parE antibiotic target alteration
ABOOBNBD_03066 ARO:3000177 98.7 1.63e-281 1 398 1.0000 1.0000 tetracycline antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
ABOOBNBD_03120 ARO:3002602 100 5.68e-187 1 259 1.0000 1.0000 aminoglycoside antibiotic ANT(3'') antibiotic inactivation
ABOOBNBD_03121 ARO:3000361 98.8 1.72e-287 1 406 1.0000 1.0000 macrolide antibiotic macrolide esterase antibiotic inactivation
ABOOBNBD_03122 ARO:3004555 100 2.32e-113 1 157 1.0000 1.0000 diaminopyrimidine antibiotic trimethoprim resistant dihydrofolate reductase dfr antibiotic target replacement
ABOOBNBD_03130 ARO:3000410 99.6 4.87e-198 1 279 1.0000 1.0000 sulfonamide antibiotic sulfonamide resistant sul antibiotic target replacement
ABOOBNBD_03131 ARO:3005010 100 2.01e-78 1 115 1.0000 1.0000 disinfecting agents and antiseptics major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
ABOOBNBD_03132 ARO:3002848 100 4.06e-115 1 150 1.0000 1.0000 rifamycin antibiotic rifampin ADP-ribosyltransferase (Arr) antibiotic inactivation
ABOOBNBD_03133 ARO:3002676 100 7.29e-161 1 210 1.0000 1.0000 phenicol antibiotic chloramphenicol acetyltransferase (CAT) antibiotic inactivation
ABOOBNBD_03134 ARO:3001396 100 3.31e-199 1 276 1.0000 1.0000 cephalosporin OXA beta-lactamase antibiotic inactivation
ABOOBNBD_03135 ARO:3002581 98 1.4e-140 2 199 0.9950 0.9754 aminoglycoside antibiotic AAC(6') antibiotic inactivation
ABOOBNBD_03137 ARO:3002539 100 8.8e-195 1 258 1.0000 1.0000 aminoglycoside antibiotic AAC(3) antibiotic inactivation
ABOOBNBD_03139 ARO:3002655 100 1.82e-256 1 341 1.0000 1.0000 aminoglycoside antibiotic APH(4) antibiotic inactivation
ABOOBNBD_03146 ARO:3000412 100 6.4e-186 12 282 0.9610 1.0000 sulfonamide antibiotic sulfonamide resistant sul antibiotic target replacement
ABOOBNBD_03155 ARO:3001926 100 6.93e-204 1 291 1.0000 1.0000 cephalosporin CTX-M beta-lactamase antibiotic inactivation
ABOOBNBD_03160 ARO:3002872 100 3.73e-103 1 138 1.0000 1.0000 phosphonic acid antibiotic fosfomycin thiol transferase antibiotic inactivation
ABOOBNBD_03164 ARO:3002641 98.5 6.49e-208 1 271 1.0000 1.0000 aminoglycoside antibiotic APH(3') antibiotic inactivation
ABOOBNBD_03167 ARO:3000167 99.5 8.27e-274 1 396 1.0000 1.0000 tetracycline antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
ABOOBNBD_03209 ARO:3000412 100 4.11e-186 1 271 1.0000 1.0000 sulfonamide antibiotic sulfonamide resistant sul antibiotic target replacement
ABOOBNBD_03210 ARO:3002639 99.6 5.98e-202 1 267 1.0000 1.0000 aminoglycoside antibiotic APH(3'') antibiotic inactivation
ABOOBNBD_03211 ARO:3002660 99.6 1.07e-205 1 278 1.0000 1.0000 aminoglycoside antibiotic APH(6) antibiotic inactivation
ABOOBNBD_03213 ARO:3002705 99.3 1.32e-274 1 404 1.0000 1.0000 phenicol antibiotic major facilitator superfamily (MFS) antibiotic efflux pump antibiotic efflux
ABOOBNBD_03360 ARO:3000808 77.2 0 1 1019 0.9941 0.9903 fluoroquinolone antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
ABOOBNBD_03443 ARO:3003288 93.4 0 1 1342 1.0000 1.0000 rifamycin antibiotic rifamycin-resistant beta-subunit of RNA polymerase (rpoB) antibiotic target alteration
ABOOBNBD_03450 ARO:3003368 94.9 3.83e-278 1 394 1.0000 1.0000 elfamycin antibiotic elfamycin resistant EF-Tu antibiotic target alteration
ABOOBNBD_03475 ARO:3000518 98.1 8.12e-149 1 210 1.0000 1.0000 macrolide antibiotic resistance-nodulation-cell division (RND) antibiotic efflux pump antibiotic efflux
ABOOBNBD_03737 ARO:3002601 99.6 1.82e-187 1 262 1.0038 1.0000 aminoglycoside antibiotic ANT(3'') antibiotic inactivation
ABOOBNBD_03738 ARO:3002895 100 5.74e-129 1 174 1.0000 1.0000 nucleoside antibiotic streptothricin acetyltransferase (SAT) antibiotic inactivation
ABOOBNBD_03739 ARO:3002854 99.4 2.81e-114 1 157 1.0000 1.0000 diaminopyrimidine antibiotic trimethoprim resistant dihydrofolate reductase dfr antibiotic target replacement






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
ABOOBNBD_00014 PHI:8576 pyrE (Dda3937_03258) 77 6.1e-93 1 213 0.9953 1.0000 eudicots soft rot orotate phosphoribosyl transferase reduced virulence
ABOOBNBD_00035 PHI:9594 rfaC 70.5 2.1e-126 3 314 0.9781 0.9842 even-toed ungulates salmonellosis heptosyl transferase reduced virulence
ABOOBNBD_00063 PHI:8513 cpxA 79.2 1.7e-212 1 452 0.9762 0.9891 rodents colitis two-component sensor kinase loss of pathogenicity
ABOOBNBD_00064 PHI:8512 cpxR 87.8 4.4e-113 1 230 0.9914 0.9914 rodents colitis two-component response regulator loss of pathogenicity
ABOOBNBD_00069 PHI:9309 pfkA 83.2 2.8e-158 5 325 0.9877 0.9969 eudicots fire blight ATP-dependent 6-phosphofructokinase reduced virulence
ABOOBNBD_00088 PHI:2695 metJ 91.4 1.1e-52 1 105 1.0000 1.0000 eudicots tuber rot; blackleg disease repressor of the methionine biosynthesis regulon reduced virulence
ABOOBNBD_00093 PHI:9322 ppc 74.5 0 1 878 1.0000 1.0000 eudicots fire blight phosphoenolpyruvate carboxylase unaffected pathogenicity
ABOOBNBD_00105 PHI:9316 argG 83.3 6.3e-200 3 403 0.9950 0.9926 eudicots fire blight argininosuccinate synthase reduced virulence
ABOOBNBD_00107 PHI:3092 SoxR 81.2 2.2e-141 1 298 0.9770 0.9770 monocots Stewart's wilt activate gene expression in response to oxidative stress reduced virulence
ABOOBNBD_00128 PHI:10282 tufA 75.8 6e-179 1 393 0.9975 0.9975 primates skin infection; food poisoning; respiratory disease elongation factor Tu increased virulence (hypervirulence)
ABOOBNBD_00142 PHI:11120 rplN 74 2.7e-45 1 123 1.0000 1.0000 primates pertussis 50S ribosomal protein unaffected pathogenicity
ABOOBNBD_00185 PHI:9318 ilvA 79 1.1e-239 1 515 0.9828 0.9981 eudicots fire blight threonine dehydratase reduced virulence
ABOOBNBD_00195 PHI:2644 thioredoxin 1 82.4 4.2e-50 1 108 1.0000 0.9908 nematodes food poisoning redox activity reduced virulence
ABOOBNBD_00197 PHI:4074 wecA 79.6 2.3e-161 1 353 0.9860 0.9289 moths hemolymph bleeding virulence factor reduced virulence
ABOOBNBD_00252 PHI:2687 hfq 86.7 8e-37 1 90 0.9375 0.8824 rodents food poisoning regulators of systemic infection reduced virulence
ABOOBNBD_00256 PHI:2625 purA 85.2 3.7e-222 1 432 1.0000 1.0000 rodents food poisoning pathogenicity island reduced virulence
ABOOBNBD_00258 PHI:12252 nsrR 71.6 2.4e-53 1 141 0.9930 0.9456 monocots Stewart's wilt; leaf blight (maize) DNA-binding transcriptional regulator unaffected pathogenicity
ABOOBNBD_00285 PHI:10537 argR 84 9.9e-69 1 156 1.0000 1.0000 rodents infection arginine repressor reduced virulence
ABOOBNBD_00286 PHI:2959 mdh 76.9 1.1e-130 1 312 1.0000 1.0000 bony fishes enteric septicemia malate dehydrogenase reduced virulence
ABOOBNBD_00295 PHI:7130 greA 84.2 1.7e-71 1 158 1.0000 1.0000 rodents salmonellosis transcription elongation factor loss of pathogenicity
ABOOBNBD_00310 PHI:3878 pnp 83.1 0 1 709 1.0000 0.9944 even-toed ungulates food poisoning polynucleotide phosphorylase, an exoribonuclease involved in RNA processing and degradation reduced virulence
ABOOBNBD_00311 PHI:2459 nlpI 79.4 2.2e-130 1 295 1.0000 1.0000 eudicots fire blight tetratricopeptide lipoprotein reduced virulence
ABOOBNBD_00332 PHI:11411 yhbU 86.4 5.6e-170 1 331 1.0000 1.0000 rodents pneumonia ubiquinone biosynthesis protein unaffected pathogenicity
ABOOBNBD_00383 PHI:9326 metR 71.7 2e-124 1 297 0.9369 0.9519 eudicots fire blight HTH-type transcriptional regulator unaffected pathogenicity
ABOOBNBD_00384 PHI:9315 metE 75.4 0 1 754 0.9960 0.9934 eudicots fire blight 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase reduced virulence
ABOOBNBD_00396 PHI:10983 tatC 72.6 3e-102 1 259 0.9923 1.0000 rodents infection Sec-independent protein translocase protein reduced virulence
ABOOBNBD_00420 PHI:124167 narL 78.2 2.4e-89 9 219 0.9591 0.9769 rodents neonatal meningitis two-component system reduced virulence
ABOOBNBD_00422 PHI:123379 narK 78.1 5.3e-211 7 463 0.9870 0.9806 rodents salmonellosis nitrate/nitrite transporter reduced virulence
ABOOBNBD_00423 PHI:10512 narG 79.3 0 1 1241 0.9904 0.9936 rodents urinary tract infection respiratory nitrate reductase 1 alpha chain reduced virulence
ABOOBNBD_00424 PHI:10513 narH 84.8 2.4e-268 1 506 0.9787 0.9922 rodents urinary tract infection respiratory nitrate reductase 1 beta chain reduced virulence
ABOOBNBD_00426 PHI:10515 narI 77.3 6.4e-101 1 225 1.0000 1.0000 rodents urinary tract infection respiratory nitrate reductase 1 gamma chain reduced virulence
ABOOBNBD_00440 PHI:2960 frdA 87.1 0 1 598 1.0000 1.0000 bony fishes enteric septicemia fumarate reductase reduced virulence
ABOOBNBD_00476 PHI:10577 PccS1_001523 95.9 1.9e-46 1 98 1.0000 1.0000 monocots soft rot transcriptional regulator, Fis family, Fis unaffected pathogenicity
ABOOBNBD_00492 PHI:124123 tldD 83.4 1.8e-230 1 481 1.0000 1.0000 moths yersiniosis regulatory factor unaffected pathogenicity
ABOOBNBD_00500 PHI:3133 ptsN 70.5 5.4e-56 1 149 1.0000 0.9250 rodents gut-associated disease; diarrhea; enteritis; colitis part of the pyruvate-tricarboxylic acid cycle node reduced virulence
ABOOBNBD_00502 PHI:2906 rpoN 71.3 1.4e-193 1 491 1.0000 1.0000 eudicots fire blight sigma factor, regulating essential virulence gene expression loss of pathogenicity
ABOOBNBD_00520 PHI:8575 degQ (Dda3937_00697) 72 6.3e-180 4 459 0.9849 0.9978 eudicots soft rot protease reduced virulence
ABOOBNBD_00532 PHI:124164 ArcB 74.6 0 1 778 1.0000 1.0000 rodents neonatal meningitis two-component system reduced virulence
ABOOBNBD_00541 PHI:123444 ureF 99.5 2.8e-125 1 221 1.0000 0.9955 rodents catheter-associated urinary tract infection urease accessory protein UreF unaffected pathogenicity
ABOOBNBD_00554 PHI:11405 dedA 74.4 5.5e-89 1 215 0.9685 0.9773 rodents pneumonia DedA family inner membrane protein reduced virulence
ABOOBNBD_00573 PHI:6532 arcA 92 5.1e-125 1 238 1.0000 1.0000 birds meningitis aerobic respiration control protein reduced virulence
ABOOBNBD_00578 PHI:11408 yaaA 73.5 2.1e-103 1 257 0.9847 0.9291 rodents pneumonia alanine/glycine transport protein reduced virulence
ABOOBNBD_00585 PHI:3267 nhaR 76.8 1.4e-135 1 297 0.9738 0.9867 rodents infection transcriptional activator protein reduced virulence
ABOOBNBD_00593 PHI:8577 carA (Dda3937_01390) 84.9 7.9e-192 1 378 0.9767 0.9921 eudicots soft rot carbamoyl-phosphate synthase small subunit reduced virulence
ABOOBNBD_00602 PHI:10996 hybO 79.9 1.4e-177 5 368 0.9733 0.9758 rodents infection hydrogenase-2 small chain unaffected pathogenicity
ABOOBNBD_00603 PHI:10995 hybA 73.3 1.8e-152 1 337 1.0000 1.0000 rodents infection hydrogenase-2 operon protein unaffected pathogenicity
ABOOBNBD_00608 PHI:10076 STM14_RS15315 75.2 4.4e-102 155 388 0.6031 0.8069 eudicots infection hydrogenase assembly chaperone unaffected pathogenicity
ABOOBNBD_00613 PHI:7643 yedF 94.7 9.3e-39 5 80 0.9500 0.9870 primates salmonellosis hypothetical transcription factor reduced virulence
ABOOBNBD_00622 PHI:123534 phoB 79.5 2.6e-110 1 229 1.0000 1.0000 rodents gastroenteritis transcriptional regulator reduced virulence
ABOOBNBD_00638 PHI:11384 tsaA 79 1.1e-93 1 200 1.0000 1.0000 moths salmonellosis peroxiredoxin reduced virulence
ABOOBNBD_00678 PHI:3040 ClpP 85 9.3e-99 1 207 1.0000 1.0000 rodents food poisoning proteolytic component reduced virulence
ABOOBNBD_00679 PHI:9833 clpX 75.8 7.6e-180 5 423 0.9905 0.9836 eudicots black rot ATP-binding subunit of ATP-dependent Clp protease reduced virulence
ABOOBNBD_00680 PHI:7160 lon 89.2 0 1 784 1.0000 1.0000 eudicots fire blight protease increased virulence (hypervirulence)
ABOOBNBD_00681 PHI:8676 hupB (XAC1081) 71.1 1.5e-29 1 90 0.9890 1.0000 eudicots canker (Citrus) histone-like protein reduced virulence
ABOOBNBD_00693 PHI:3819 ymoA 88.1 1.9e-29 1 67 1.0000 1.0000 rodents pneumonic plague represses the transcription and expression of T3SS genes at room temperature increased virulence (hypervirulence)
ABOOBNBD_00695 PHI:7307 AcrB 76.5 0 1 1044 0.9924 0.9933 rodents salmonellosis efflux pump membrane transporter reduced virulence
ABOOBNBD_00706 PHI:7575 yjiY 89.3 0 1 716 1.0000 1.0000 rodents salmonellosis peptide-utilizing carbon starvation protein reduced virulence
ABOOBNBD_00759 PHI:6508 DksA 94.7 7.8e-79 1 151 1.0000 1.0000 rodents salmonellosis response regulator reduced virulence
ABOOBNBD_00769 PHI:123919 relA 78.1 0 1 743 0.9960 0.9946 nematodes neonatal meningitis GTP pyrophosphokinase reduced virulence
ABOOBNBD_00781 PHI:11344 c2516 70.9 1.3e-127 19 358 0.9444 0.9659 birds avian colibacillosis putative iron transport protein reduced virulence
ABOOBNBD_00849 PHI:9154 potE 82.3 3e-203 1 434 0.9819 0.9909 birds colibacillosis None unaffected pathogenicity
ABOOBNBD_00889 PHI:8581 lysA (Dda3937_02577) 72.1 8.2e-171 10 411 0.9710 0.9571 eudicots soft rot diamiopimelate decarboxylase reduced virulence
ABOOBNBD_00897 PHI:8942 nqrD (PA2996) 70.5 9.2e-78 1 207 0.9904 0.9241 moths nosocomial infection Na(+)-translocating NADH-quinone reductase unaffected pathogenicity
ABOOBNBD_00917 PHI:10380 RecA 72.2 5.6e-136 3 329 0.9211 0.9370 nematodes nosocomial infection DNA strand exchange and recombination protein reduced virulence
ABOOBNBD_00919 PHI:7161 csrA 96.6 4.6e-25 1 59 0.9516 0.9672 eudicots fire blight RNA-binding protein reduced virulence
ABOOBNBD_00927 PHI:3731 LuxS 84.2 1.3e-82 1 171 1.0000 1.0000 birds colibacillosis; cellulitis; swollen head syndrome controller in the quorum sensing reduced virulence
ABOOBNBD_00945 PHI:10595 clpB 81.3 0 1 857 0.9988 1.0000 eudicots soft rot chaperone protein unaffected pathogenicity
ABOOBNBD_00967 PHI:8968 proV 72.9 2.4e-167 1 398 0.9975 0.9950 rodents pneumonia glycine betaine/L-proline transport ATP-binding protein reduced virulence
ABOOBNBD_00973 PHI:7263 cspE 85.5 1.1e-30 1 69 1.0000 1.0000 primates salmonellosis cold shock protein reduced virulence
ABOOBNBD_00993 PHI:124243 gltI 75.5 2.9e-125 1 297 1.0000 1.0000 rodents neonatal meningitis glutamate transporters reduced virulence
ABOOBNBD_01001 PHI:7671 ybeY 78.7 2e-69 1 155 1.0000 0.9873 primates yersiniosis endoribonuclease reduced virulence
ABOOBNBD_01108 PHI:11509 fur 86.4 8.8e-75 1 147 0.9932 0.9800 rodents salmonellosis ferric uptake regulation protein reduced virulence
ABOOBNBD_01129 PHI:7962 sdhC 74.7 4.7e-34 3 93 0.9785 0.7054 nematodes urinary tract infection succinate dehydrogenase reduced virulence
ABOOBNBD_01130 PHI:7963 sdhD 70.4 3.5e-39 1 114 1.0000 1.0000 nematodes urinary tract infection succinate dehydrogenase reduced virulence
ABOOBNBD_01131 PHI:7964 sdhA 92 0 1 588 1.0000 1.0000 nematodes urinary tract infection succinate dehydrogenase flavoprotein subunit reduced virulence
ABOOBNBD_01132 PHI:7965 sdhB 87.8 4.2e-127 1 238 1.0000 1.0000 nematodes urinary tract infection succinate dehydrogenase iron-sulfur subunit reduced virulence
ABOOBNBD_01148 PHI:10905 tolB 74.7 2.5e-194 1 431 1.0000 1.0000 rodents colitis colicin import protein reduced virulence
ABOOBNBD_01179 PHI:10987 moaA 73.6 3.2e-146 3 326 0.9939 0.9909 rodents infection GTP 3',8-cyclase unaffected pathogenicity
ABOOBNBD_01218 PHI:2652 magA 82.4 1e-91 1 193 1.0000 1.0000 rodents urinary tract infection; nosocomial pneumonia; abdominal infection contributes to K1 capsular polysaccharide (CPS) biosynthesis reduced virulence
ABOOBNBD_01229 PHI:9324 hisA 71.3 5e-99 1 244 0.9959 0.9959 eudicots fire blight N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase unaffected pathogenicity
ABOOBNBD_01234 PHI:5109 prt 86.6 1.4e-143 1 299 1.0000 1.0000 rodents colitis OAg biosynthesis reduced virulence
ABOOBNBD_01250 PHI:10536 artP 79.8 8.3e-107 1 242 1.0000 1.0000 rodents infection arginine ABC transporter, ATP-binding protein reduced virulence
ABOOBNBD_01258 PHI:8569 clpA (Dda3937_02363) 81.1 0 1 755 0.9882 0.9894 eudicots soft rot ATP-dependent Clp protease ATP-binding subunit reduced virulence
ABOOBNBD_01264 PHI:6497 lrp 98.8 2.6e-88 1 164 1.0000 1.0000 moths None global transcription factor reduced virulence
ABOOBNBD_01267 PHI:6447 rarA 85.5 1.9e-221 9 455 0.9781 1.0000 nematodes pneumonia Holliday junction DNA helicase reduced virulence
ABOOBNBD_01280 PHI:7061 aroA 76.7 5.3e-189 1 424 0.9907 0.9930 rodents salmonellosis 3-phosphoshikimate 1-carboxyvinyltransferase unaffected pathogenicity
ABOOBNBD_01283 PHI:124345 ihfB 87.4 6.7e-44 1 95 1.0000 1.0000 primates pneumonia integration host factor reduced virulence
ABOOBNBD_01315 PHI:12051 evpB 74.2 1.2e-221 13 492 0.9756 0.9695 eukaryotes colibacillosis type VI secretion system protein unaffected pathogenicity
ABOOBNBD_01317 PHI:123750 Hcp 89.5 2.4e-92 1 172 1.0000 1.0000 bony fishes furunculosis effector protein effector (plant avirulence determinant)
ABOOBNBD_01355 PHI:3676 rmf3 80.4 4.4e-19 1 51 0.9107 0.9273 eudicots fire blight None unaffected pathogenicity
ABOOBNBD_01359 PHI:4160 OmpA2 70.8 4.1e-142 1 360 0.9945 0.9943 moths pneumonia outer membrane proteins reduced virulence
ABOOBNBD_01465 PHI:7263 cspE 75 2.2e-23 7 70 0.9143 1.0000 primates salmonellosis cold shock protein reduced virulence
ABOOBNBD_01540 PHI:8898 cobB (Yp_1760) 72 1.3e-111 4 271 0.9404 0.9568 rodents plague protein deacetylase reduced virulence
ABOOBNBD_01545 PHI:7904 phoP 70.7 2.4e-92 1 222 0.9911 0.9955 even-toed ungulates zoonotic infection response regulator protein unaffected pathogenicity
ABOOBNBD_01564 PHI:7263 cspE 70.3 2.4e-22 7 70 0.9143 1.0000 primates salmonellosis cold shock protein reduced virulence
ABOOBNBD_01659 PHI:7263 cspE 70.6 1.3e-23 3 70 0.9714 1.0000 primates salmonellosis cold shock protein reduced virulence
ABOOBNBD_01700 PHI:124002 yebE 81.9 3.2e-129 1 292 1.0000 1.0000 rodents colitis cpx-regulated gene unaffected pathogenicity
ABOOBNBD_01723 PHI:124344 ihfA 89.8 7.4e-46 1 98 1.0000 0.9899 primates pneumonia integration host factor reduced virulence
ABOOBNBD_01727 PHI:7950 arnC 73.9 4.4e-135 1 326 1.0000 0.9908 moths pneumonia putative sugar transferase unaffected pathogenicity
ABOOBNBD_01728 PHI:7951 arnA 72.7 1.9e-299 1 651 0.9864 0.9849 moths pneumonia hypothetical protein unaffected pathogenicity
ABOOBNBD_01794 PHI:123750 Hcp 89.5 2.4e-92 1 172 1.0000 1.0000 bony fishes furunculosis effector protein effector (plant avirulence determinant)
ABOOBNBD_01806 PHI:5013 znuB 76.9 3.9e-102 1 260 0.9962 0.9962 rodents gut-associated disease; diarrhea; enteritis; colitis zinc transporter reduced virulence
ABOOBNBD_01807 PHI:11909 znuC 74.5 5.2e-101 1 239 0.9917 0.9447 rodents pneumonic plague zinc transporter reduced virulence
ABOOBNBD_01821 PHI:4108 fadD 71.1 1.6e-238 1 552 0.9822 0.9806 rabbits and hares cholera encoding a long-chain fatty acyl coenzyme A (acyl-CoA) ligase reduced virulence
ABOOBNBD_01857 PHI:4876 FNR 93.9 1.9e-130 1 244 0.9683 0.9760 rodents infection global regulator reduced virulence
ABOOBNBD_01867 PHI:11383 ahpC 87.7 4.9e-99 1 187 1.0000 1.0000 moths salmonellosis peroxiredoxin reduced virulence
ABOOBNBD_01894 PHI:11664 dmsA 75.3 0 14 811 0.9803 0.9963 rodents Haemophilus influenzae disease putative dimethylsulfoxide (DMSO) reductase, catalytic subunit reduced virulence
ABOOBNBD_01966 PHI:10048 fumC 83.6 1.1e-227 1 463 0.9957 0.9914 rodents salmonellosis fumarate hydratase class II reduced virulence
ABOOBNBD_02012 PHI:9321 trpB 83.6 2.8e-200 1 396 1.0000 1.0000 eudicots fire blight tryptophan synthase beta chain reduced virulence
ABOOBNBD_02057 PHI:6114 RovA 77.9 6.3e-54 1 140 0.9859 0.9790 rodents plague MarR-family regulator reduced virulence
ABOOBNBD_02064 PHI:11377 sodB 80.2 2.3e-91 1 192 1.0000 0.9948 moths salmonellosis cytoplasmic superoxide dismutase increased virulence (hypervirulence)
ABOOBNBD_02073 PHI:10107 STM14_RS07745 (pykF) 84.5 6.8e-222 1 470 1.0000 1.0000 eudicots infection pyruvate kinase I reduced virulence
ABOOBNBD_02082 PHI:10100 STM14_RS07710 (sufC) 81.9 9.1e-117 1 248 1.0000 1.0000 eudicots infection Fe-S cluster assembly ATPase reduced virulence
ABOOBNBD_02083 PHI:6893 sufB 80.6 2.2e-234 5 498 0.9920 0.9939 rodents salmonellosis sulfur mobilization unaffected pathogenicity
ABOOBNBD_02126 PHI:7520 VK055_1952 75.9 3.9e-212 8 491 0.9857 0.9918 rodents pneumonia betaine aldehyde dehydrogenase unaffected pathogenicity
ABOOBNBD_02154 PHI:6097 hns 80 3.2e-52 1 134 1.0000 1.0000 rodents pneumonia pleiotropic regulator increased virulence (hypervirulence)
ABOOBNBD_02156 PHI:124019 GalU 76.1 3.3e-129 1 297 0.9867 0.9801 birds salmonellosis uridine diphosphate–glucose pyrophosphorylase reduced virulence
ABOOBNBD_02177 PHI:11407 gntR 77.8 1e-104 1 234 0.9791 0.9791 rodents pneumonia fatty acid metabolism regulator reduced virulence
ABOOBNBD_02211 PHI:124107 ModA (CP110673) 98.8 2.1e-137 1 251 1.0000 1.0000 rodents urinary tract infection the molybdate-binding protein reduced virulence
ABOOBNBD_02218 PHI:8579 guaB (Dda3937_00004) 89.1 5.6e-243 1 487 0.9980 1.0000 eudicots soft rot IMP dehydrogenase reduced virulence
ABOOBNBD_02252 PHI:5063 ppk 100 0 1 693 1.0000 1.0000 rodents urinary tract infection polyphosphate kinase reduced virulence
ABOOBNBD_02260 PHI:9198 yegN 75.9 0 6 1028 0.9808 0.9952 rodents urinary tract infection multidrug efflux system subunit reduced virulence
ABOOBNBD_02272 PHI:8505 BfvR (YPO1737) 80.2 1.1e-54 1 121 0.9453 0.9453 rodents pneumonic plague AraC-family transcriptional regulator increased virulence (hypervirulence)
ABOOBNBD_02293 PHI:3922 FliZ 85.1 1.7e-80 1 168 0.9545 0.9882 moths None global regulatory protein reduced virulence
ABOOBNBD_02306 PHI:123276 fliF 100 0 1 573 1.0000 1.0000 primates urinary tract infection; urolithiasis flagellar M-ring protein reduced virulence
ABOOBNBD_02335 PHI:8731 flhA 76.2 3.9e-298 1 694 0.9971 1.0000 rodents typhoid flagellar biosynthesis protein reduced virulence
ABOOBNBD_02337 PHI:10050 cheZ 70.3 7.6e-75 17 218 0.9266 0.9299 rodents salmonellosis protein phosphatase/ chemotactic response protein reduced virulence
ABOOBNBD_02338 PHI:8732 cheY 82.2 6.1e-56 1 129 1.0000 1.0000 rodents typhoid chemotaxis regulator protein reduced virulence
ABOOBNBD_02339 PHI:6461 cheB 76.6 2.6e-149 1 350 1.0000 1.0000 rodents salmonellosis chemotaxis reduced virulence
ABOOBNBD_02343 PHI:6536 cheW 82.5 1.6e-64 8 161 0.9277 0.9222 birds meningitis chemotaxis protein unaffected pathogenicity
ABOOBNBD_02347 PHI:8572 flhC (Dda3937_02784) 82.3 2.1e-84 1 186 0.9637 0.9635 eudicots soft rot flagellar transcriptional activator reduced virulence
ABOOBNBD_02348 PHI:12271 FlhD 76.2 4.4e-31 1 84 1.0000 0.7059 flies opportunistic infection flagellar transcriptional regulator FlhD unaffected pathogenicity
ABOOBNBD_02352 PHI:7262 cspC 89.6 8.2e-31 4 70 0.9571 0.9710 primates salmonellosis cold shock protein reduced virulence
ABOOBNBD_02363 PHI:10115 STM14_RS07780 (ttrB) 80.3 1.3e-120 1 244 0.9919 0.9760 eudicots infection tetrathionate reductase subunit B reduced virulence
ABOOBNBD_02413 PHI:10469 RcsB (YE1397) 92 5.7e-107 1 213 0.9771 0.9907 primates yersiniosis; acute gastroenteritis transcriptional regulatory protein increased virulence (hypervirulence)
ABOOBNBD_02424 PHI:10648 katA 77.3 2e-232 2 475 0.9793 0.9855 rodents opportunistic infection catalase unaffected pathogenicity
ABOOBNBD_02438 PHI:8937 nuoI (PA2644) 81.1 2.1e-83 6 180 0.9722 0.9615 moths nosocomial infection NADH-quinone oxidoreductase unaffected pathogenicity
ABOOBNBD_02453 PHI:9843 ackA 72.1 1e-165 3 399 0.9925 0.9925 flies infection acetate kinase unaffected pathogenicity
ABOOBNBD_02454 PHI:123168 pta 83.5 0 1 712 0.9972 1.0000 rodents salmonellosis phosphate acetyltransferase reduced virulence
ABOOBNBD_02474 PHI:9317 purF 82.2 7.7e-248 1 505 1.0000 1.0000 eudicots fire blight amidophosphoribosyltransferase reduced virulence
ABOOBNBD_02528 PHI:9311 ptsH 87.1 3.9e-35 1 85 1.0000 1.0000 eudicots fire blight phosphocarrier protein HPr reduced virulence
ABOOBNBD_02529 PHI:9312 ptsI 77.7 4.4e-255 1 575 1.0000 1.0000 eudicots fire blight phosphoenolpyruvate-protein phosphotransferase reduced virulence
ABOOBNBD_02559 PHI:6892 iscU 89.8 3.9e-63 1 128 1.0000 1.0000 rodents salmonellosis Fe-S cluster sensor reduced virulence
ABOOBNBD_02561 PHI:3043 IscR 80.5 2.1e-69 1 163 0.9939 0.9939 rodents gastrointestinal disease; yersiniosis type III secretion system reduced virulence
ABOOBNBD_02567 PHI:2962 glyA 86.8 1.1e-215 1 417 1.0000 1.0000 bony fishes enteric septicemia serine hydroxymethyltransferase reduced virulence
ABOOBNBD_02568 PHI:123275 hmpA 99.5 1e-231 1 396 1.0000 1.0000 primates urinary tract infection; urolithiasis flavohemoprotein loss of pathogenicity
ABOOBNBD_02575 PHI:8580 purL (Dda3937_03379) 75.7 0 1 1294 0.9985 0.9977 eudicots soft rot phosphoribosylformyl-glycineamide synthetase reduced virulence
ABOOBNBD_02588 PHI:3724 RNase III 85.4 7.5e-110 1 226 1.0000 1.0000 moths food poisoning endoribonucleases reduced virulence
ABOOBNBD_02594 PHI:5238 RpoE 100 5.2e-104 1 192 1.0000 1.0000 rodents urinary tract infection RNA polymerase sigma-E factor reduced virulence
ABOOBNBD_02605 PHI:4218 smpB 85 1.8e-78 1 160 1.0000 1.0000 birds avian colibacillosis trans-translation is a bacterial translational control system that directs the modification and degradation of proteins, reduced virulence
ABOOBNBD_02675 PHI:2961 gcvP 70.9 0 1 957 0.9990 0.9990 bony fishes enteric septicemia glycine dehydrogenase reduced virulence
ABOOBNBD_02704 PHI:3135 pdhR 81.5 3.1e-115 6 259 0.9732 1.0000 rodents gut-associated disease; diarrhea; enteritis; colitis part of the pyruvate-tricarboxylic acid cycle node reduced virulence
ABOOBNBD_02736 PHI:2672 fruR 83.2 1.1e-162 1 334 0.9970 1.0000 rodents food poisoning regulators of systemic infection reduced virulence
ABOOBNBD_02739 PHI:8578 leuA (Dda3937_04301) 74 8e-224 1 519 1.0000 1.0000 eudicots soft rot 2-isopropylmalate synthase reduced virulence
ABOOBNBD_02740 PHI:8963 leuB 78.7 7.4e-168 1 362 0.9972 0.9972 rodents pneumonia 3-isopropylmalate dehydrogenase reduced virulence
ABOOBNBD_02741 PHI:8964 leuC 84.2 4.8e-228 1 463 0.9872 0.9936 rodents pneumonia 3-isopropylmalate dehydratase large subunit reduced virulence
ABOOBNBD_02742 PHI:8965 leuD 78.2 2.5e-88 3 199 0.9850 0.9801 rodents pneumonia 3-isopropylmalate dehydratase small subunit reduced virulence
ABOOBNBD_02748 PHI:9150 speB 81.8 3.1e-151 5 306 0.9869 0.9869 birds colibacillosis agmatinase reduced virulence
ABOOBNBD_02764 PHI:10593 hcp 82.4 3.5e-278 1 550 1.0000 1.0000 eudicots soft rot hydroxylamine reductase unaffected pathogenicity
ABOOBNBD_02784 PHI:10587 kduD 70.5 1.7e-99 1 251 1.0000 0.9921 monocots soft rot 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase unaffected pathogenicity
ABOOBNBD_02814 PHI:11418 ppiB 83.5 2.9e-79 1 164 1.0000 1.0000 rodents salmonellosis peptidyl-prolyl cis-trans isomerase reduced virulence
ABOOBNBD_02838 PHI:6472 htpG 81.4 4.5e-298 3 623 0.9904 0.9968 rodents diarrhea heat shock protein 90 chaperone reduced virulence
ABOOBNBD_02876 PHI:10243 pmpA 100 3.8e-96 1 183 1.0000 1.0000 rodents urinary tract infection; urolithiasis F7-2 fimbrial protein reduced virulence
ABOOBNBD_02890 PHI:10574 rpoS 80.5 9.5e-146 1 327 0.9939 0.9970 monocots soft rot RNA polymerase sigma factor unaffected pathogenicity
ABOOBNBD_02903 PHI:9323 cysI3 75.4 1.5e-263 8 571 0.9792 0.9860 eudicots fire blight sulfite reductase unaffected pathogenicity
ABOOBNBD_02945 PHI:9334 map 77 3.5e-122 1 265 1.0000 0.9962 rodents colitis effector protein effector (plant avirulence determinant)
ABOOBNBD_02969 PHI:9372 amiC 72 7.8e-169 1 414 0.9857 0.9928 rodents bubonic plague N-acetylmuramoyl-L-alanine amidase unaffected pathogenicity
ABOOBNBD_02996 PHI:10573 rsmA 75.7 2.1e-119 1 272 1.0000 1.0000 monocots soft rot ribosomal RNA small subunit methyltransferase A unaffected pathogenicity
ABOOBNBD_03014 PHI:6697 yqiC 70.9 1.4e-26 1 86 0.8269 0.8586 primates salmonellosis membrane fusogenic activity reduced virulence
ABOOBNBD_03123 PHI:9804 int 100 3.8e-14 1 37 0.1160 1.0000 rodents gastroenteritis integrase reduced virulence
ABOOBNBD_03248 PHI:123442 yntA 99.8 0 1 527 1.0000 1.0000 rodents catheter-associated urinary tract infection putative nickel/di-oligopepetide ABC transporter, substrate-binding protein reduced virulence
ABOOBNBD_03254 PHI:10070 STM14_RS15285 75.8 6.7e-264 14 577 0.9775 0.9930 eudicots infection formate hydrogenlyase subunit 4 unaffected pathogenicity
ABOOBNBD_03262 PHI:6420 EF-P 84.6 1.5e-92 1 188 1.0000 1.0000 rodents salmonellosis elongation factor increased virulence (hypervirulence)
ABOOBNBD_03280 PHI:123643 dcuA 82.8 2.9e-190 1 441 1.0000 1.0000 rodents neonatal meningitis regulatory protein unaffected pathogenicity
ABOOBNBD_03407 PHI:9310 pgi 79 2.9e-264 1 548 1.0000 1.0000 eudicots fire blight glucose-6-phosphate isomerase reduced virulence
ABOOBNBD_03413 PHI:11150 edd 72.9 2.6e-261 16 616 0.9725 0.9804 eudicots soft rot (potato); blackleg disease (potato) phosphogluconate dehydratase unaffected pathogenicity
ABOOBNBD_03414 PHI:11149 eda 79.7 2.9e-95 1 212 0.9953 0.9953 eudicots soft rot (potato); blackleg disease (potato) 2-keto-3-deoxy-6-phosphogluconate aldolase reduced virulence
ABOOBNBD_03418 PHI:9313 metA 73.8 1.4e-135 1 309 1.0000 1.0000 eudicots fire blight homoserine O-succinyltransferase reduced virulence
ABOOBNBD_03429 PHI:3074 hupA 74.4 5.6e-32 1 90 1.0000 1.0000 bony fishes hemorrhagic septicemia nucleoid-associated protein, is a basic DNA-binding protein involved in gene regulation reduced virulence
ABOOBNBD_03443 PHI:7860 RpoB 70.7 0 1 1338 0.9970 1.0000 nematodes nosocomial infection beta-subunit of the RNA polymerase reduced virulence
ABOOBNBD_03450 PHI:10282 tufA 75.8 6e-179 1 393 0.9975 0.9975 primates skin infection; food poisoning; respiratory disease elongation factor Tu increased virulence (hypervirulence)
ABOOBNBD_03475 PHI:4063 Crp 98.6 7.7e-117 1 210 1.0000 1.0000 rodents pneumonic plague transcriptional regulator reduced virulence
ABOOBNBD_03521 PHI:10548 spoT 84.2 0 1 708 1.0000 1.0000 rodents salmonellosis (P)ppGpp synthetase reduced virulence
ABOOBNBD_03524 PHI:123647 gltS 78.2 6.8e-170 1 399 0.9876 0.9950 rodents neonatal meningitis regulatory protein unaffected pathogenicity
ABOOBNBD_03537 PHI:11030 bipA 86.4 6.1e-308 1 602 0.9950 0.9918 rodents pneumonic plague putative GTPase reduced virulence
ABOOBNBD_03538 PHI:7742 glnA 82.7 3.7e-236 1 468 0.9979 0.9979 primates salmonellosis glutamine synthetase reduced virulence
ABOOBNBD_03547 PHI:11693 ompR 87.8 4.1e-122 1 237 0.9875 0.9916 primates infection transcriptional regulator reduced virulence
ABOOBNBD_03554 PHI:123166 phoU 81.1 1.3e-110 1 238 0.9754 0.9876 rodents salmonellosis phosphate-specific transport system accessory protein PhoU reduced virulence
ABOOBNBD_03572 PHI:10919 EaAdeP (EAMY 3685) 78.7 4.7e-188 13 444 0.9558 0.9908 eudicots fire blight putative AzgA family transporter reduced virulence
ABOOBNBD_03587 PHI:3272 glpD 78.8 5.5e-238 1 496 0.9980 0.9286 rodents pneumonic plague glycerol-3-phosphate dehydrogenase involved in glycerol fermentation unaffected pathogenicity
ABOOBNBD_03589 PHI:9325 metF 80.5 9.5e-145 1 297 0.9933 0.9867 eudicots fire blight methylenetetrahydrofolate reductase unaffected pathogenicity
ABOOBNBD_03604 PHI:123443 nikA 99.8 5.3e-308 1 525 1.0000 1.0000 rodents catheter-associated urinary tract infection ABC transporter. substrate-binding protein reduced virulence
ABOOBNBD_03630 PHI:123868 DHDPS (LC602498) 82.4 1.5e-142 1 296 0.9966 1.0000 bony fishes gastroenteritis dihydrodipicolinate synthase unaffected pathogenicity
ABOOBNBD_03631 PHI:11065 STM14_1285 (AsiR) 73.2 1.1e-113 3 292 0.9831 0.9932 rodents salmonellosis putative RpiR-family transcriptional regulator increased virulence (hypervirulence)
ABOOBNBD_03648 PHI:123750 Hcp 88.4 1.6e-91 1 172 1.0000 1.0000 bony fishes furunculosis effector protein effector (plant avirulence determinant)
ABOOBNBD_03694 PHI:11376 sodA 77.2 2.4e-94 1 206 0.9952 0.9951 moths salmonellosis cytoplasmic superoxide dismutase reduced virulence
ABOOBNBD_03695 PHI:9227 acs 78.6 0 1 650 0.9969 0.9969 birds avian colisepticemia acetyl-coenzyme A synthetase reduced virulence
ABOOBNBD_03697 PHI:9229 actP 80.3 3.4e-233 20 551 0.9655 0.9672 birds avian colisepticemia acetate/glycolate:cation symporter reduced virulence
ABOOBNBD_03719 PHI:9436 atpB 80.1 1.5e-120 4 274 0.9891 0.9963 rodents gastroenteritis F0F1 ATP synthase subunit A reduced virulence
ABOOBNBD_03728 PHI:9308 glmS 79.5 4.7e-276 1 608 1.0000 1.0000 eudicots fire blight glucosamine-fructose-6-phosphateaminotransferase reduced virulence
ABOOBNBD_03779 PHI:10994 fdoG 83.3 0 1 803 1.0000 1.0000 rodents infection formate dehydrogenase-O major subunit unaffected pathogenicity
ABOOBNBD_03780 PHI:10994 fdoG 87.7 1e-99 1 195 1.0000 1.0000 rodents infection formate dehydrogenase-O major subunit unaffected pathogenicity






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
ABOOBNBD_00021 QLJ19314.1|GT4 100 6.6e-275 1 375 1 1
ABOOBNBD_00022 QOV82930.1|GT9 100 1.96e-248 1 333 1 1
ABOOBNBD_00023 QXL75861.1|GT4 100 4.45e-274 1 368 1 1
ABOOBNBD_00024 QLJ19317.1|GT4 100 2.08e-282 1 392 1 1
ABOOBNBD_00028 VEB80954.1|GT2 100 4.9e-189 1 259 1 1
ABOOBNBD_00029 QEG43988.1|GT30 100 1.01e-308 1 425 1 1
ABOOBNBD_00030 VEB80960.1|GT4 100 1.8e-268 1 367 1 1
ABOOBNBD_00031 VEB80963.1|GT4 100 3.72e-282 1 377 1 1
ABOOBNBD_00032 ALE20807.1|GT9 100 1.12e-265 1 355 1 1
ABOOBNBD_00034 ALE20809.1|GT9 100 2.74e-263 1 358 1 1
ABOOBNBD_00035 QOR43405.1|GT9 100 5.11e-237 1 319 1 1
ABOOBNBD_00036 VEB80978.1|GT9 100 1.84e-257 1 350 1 1
ABOOBNBD_00052 AXY99373.1|GT4 100 8.77e-301 1 403 1 1
ABOOBNBD_00056 VEB81044.1|GT4 100 1.84e-175 1 258 0.7127 0.9451
ABOOBNBD_00061 AXY99364.1|GT2 100 2.05e-252 1 346 1 1
ABOOBNBD_00066 VEB81078.1|GT4 100 1.46e-260 1 353 1 1
ABOOBNBD_00067 AZH06892.1|GT4 100 4.85e-276 1 382 1 1
ABOOBNBD_00094 AWS55864.1|GT2 99.4 4.48e-250 1 327 0.9849 1
ABOOBNBD_00199 QLK59446.1|GT0 76.5 1.2e-211 1 375 0.9973 0.9973
ABOOBNBD_00206 QLJ19520.1|GT56 100 6.79e-270 1 361 1 1
ABOOBNBD_00208 QIM23454.1|GT26 100 9.5e-180 1 245 1 1
ABOOBNBD_00534 QLJ19824.1|GT51 100 1.1e-163 1 233 1 1
ABOOBNBD_00567 QYH21099.1|GH23 100 0 1 639 1 1
ABOOBNBD_00716 AWK40744.1|CE9 71.2 5.34e-210 1 403 1 1
ABOOBNBD_00762 QKQ94822.1|GT51 100 0 1 770 1 1
ABOOBNBD_00775 QGM64353.1|CBM50|GH23 100 0 1 444 1 1
ABOOBNBD_00826 QKQ94884.1|GT83 100 0 1 548 1 1
ABOOBNBD_00838 ALE24649.1|GH65 100 0 1 905 1 1
ABOOBNBD_00866 QOV83728.1|GH23 100 7.51e-260 1 356 1 1
ABOOBNBD_00989 AMJ20771.1|GH13_26 79.2 0 1 860 1 1
ABOOBNBD_00993 UWT99371.1|GT4 95.6 4.34e-202 1 297 1 1
ABOOBNBD_01016 QPI90310.1|CE9 100 5.12e-285 1 387 1 1
ABOOBNBD_01062 AWF39365.1|GH24 100 1.84e-106 1 156 1 1
ABOOBNBD_01132 UXA35285.1|GT51 97.1 2.07e-175 1 238 1 1
ABOOBNBD_01532 ARX07955.1|GH3 100 3.35e-243 1 339 1 1
ABOOBNBD_01571 QSC11944.1|GH24 100 1.29e-106 1 156 1 1
ABOOBNBD_01618 QTO10122.1|GH24 100 1.4e-110 1 156 1 1
ABOOBNBD_01711 ARX35106.1|GH23 100 2.82e-166 1 233 1 1
ABOOBNBD_01727 QHZ88976.1|GT2 100 4.13e-226 1 326 1 1
ABOOBNBD_01730 ATC76084.1|GT83 100 0 1 553 1 1
ABOOBNBD_01809 QLJ20970.1|CBM50 100 9.07000001236494e-316 1 442 1 1
ABOOBNBD_01827 ATC75996.1|GH103 100 1.81e-272 1 375 1 1
ABOOBNBD_02289 QXF33454.1|GH13_3 81.5 2.5e-260 18 465 0.9532 0.9573
ABOOBNBD_02322 QOR41390.1|GH73 100 8.7e-229 1 328 1 1
ABOOBNBD_02550 QOV81774.1|GT51 100 0 1 773 1 1
ABOOBNBD_02576 QKQ96451.1|GH23 100 0 1 489 1 1
ABOOBNBD_02720 AGS60604.1|CE11 100 9.36e-222 1 306 1 1
ABOOBNBD_02726 AUU13575.1|GT28 100 5.94e-259 1 360 1 1
ABOOBNBD_02754 ATC79703.1|GT2 100 0 1 865 1 1
ABOOBNBD_02781 QTO07778.1|PL8_2 100 0 1 1021 1 1
ABOOBNBD_02782 QTO07779.1|PL8_2 100 0 1 1013 1 1
ABOOBNBD_02783 QKQ96649.1|GH105 100 4.63e-279 1 356 1 1
ABOOBNBD_02786 QSC09607.1|CE9 100 5.99e-285 1 389 1 1
ABOOBNBD_02796 QLJ18232.1|GH154 100 0 1 491 1 1
ABOOBNBD_02842 QTO07835.1|GH32 100 0 1 488 1 1
ABOOBNBD_02891 QPI96929.1|CBM50 100 1.52e-243 1 374 1 1
ABOOBNBD_02931 QXL78627.1|GT19 100 6.93e-279 1 388 1 1
ABOOBNBD_02965 QSC09765.1|GH102 100 6.77e-267 1 364 1 1
ABOOBNBD_03094 AGP81155.1|GH23 100 4.15e-127 1 182 1 1
ABOOBNBD_03249 QER00685.1|GT2 100 5.39e-249 1 330 1 1
ABOOBNBD_03313 QIM26240.1|AA10 100 4.77e-150 1 203 1 1
ABOOBNBD_03318 AND11729.1|GH73 100 1.7e-187 1 264 1 1
ABOOBNBD_03595 QSC10276.1|GH33 100 4.42e-274 1 350 1 1
ABOOBNBD_03609 QIM30040.1|GH4 100 0 1 450 1 1
ABOOBNBD_03679 QTO08636.1|GT51 100 0 1 820 1 0.9716
ABOOBNBD_03766 ATC74084.1|GT2 100 0 1 704 1 1
ABOOBNBD_03772 QSC14314.1|GH8 100 2.84e-263 1 345 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
ABOOBNBD_00070 3.A.1.6.1 77.1 2.5e-149 2 333 0.9940 1.1877 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00077 1.A.8.1.1 70.9 8.2e-111 1 268 0.9889 0.9502 1 Channels/Pores 1.A α-Type Channels 1.A.8 The Major Intrinsic Protein (MIP) Family
ABOOBNBD_00096 2.A.1.6.4 77.5 1.8e-225 3 500 0.9960 0.9960 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
ABOOBNBD_00152 3.A.5.1.1 94.1 4e-232 1 440 1.0000 2.1359 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.5 The General Secretory Pathway (Sec) Family
ABOOBNBD_00160 1.A.22.1.1 78.2 7.3e-52 1 133 0.9852 0.9706 1 Channels/Pores 1.A α-Type Channels 1.A.22 The Large Conductance Mechanosensitive Ion Channel (MscL) Family
ABOOBNBD_00161 2.A.38.1.1 83.4 1.1e-219 1 458 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.38 The K+ Transporter (Trk) Family
ABOOBNBD_00197 9.B.146.1.7 77.3 1.2e-154 1 352 0.9832 0.9591 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.146 The Putative Undecaprenyl-phosphate N-Acetylglucosaminyl Transferase (MurG) Family
ABOOBNBD_00201 9.B.18.2.4 83 4.6e-178 1 353 0.9944 0.9944 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.18 The Xanthan Glycosyl Transferase, GumD (GumD) Family
ABOOBNBD_00205 2.A.66.2.3 72.4 1.2e-164 1 417 0.9976 0.9976 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.66 The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily
ABOOBNBD_00207 9.B.128.1.1 75.8 7.9e-191 1 446 0.9824 0.9933 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.128 The O-antigen Polymerase, WzyE (WzyE) Family
ABOOBNBD_00252 9.B.468.1.1 85.6 1.8e-36 1 90 0.9375 0.8824 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.468 The Hfq RNA Chaparone Protein (Hfq) Family
ABOOBNBD_00274 1.A.112.2.12 74.9 3.4e-186 1 431 0.9431 0.9685 1 Channels/Pores 1.A α-Type Channels 1.A.112 The Cyclin M Mg2+ Exporter (CNNM) Family
ABOOBNBD_00298 3.A.29.1.5 86.7 0 4 633 0.9707 0.9814 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.29 The Mitochondrial Inner Membrane i-AAA Protease Complex (MIMP) Family
ABOOBNBD_00379 2.A.40.7.7 82.5 1.6e-196 10 448 0.9799 0.9670 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.40 The Nucleobase/Ascorbate Transporter (NAT) or Nucleobase:Cation Symporter-2 (NCS2) Family
ABOOBNBD_00396 2.A.64.1.1 72.6 6.7e-102 1 259 0.9923 2.8989 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.64 The Twin Arginine Targeting (Tat) Family
ABOOBNBD_00405 2.A.38.1.1 83.6 5.5e-235 1 483 1.0000 1.0546 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.38 The K+ Transporter (Trk) Family
ABOOBNBD_00418 2.A.117.1.4 70.7 1e-54 1 140 0.9589 0.9524 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.117 The Chlorhexadine Exporter (CHX) Family
ABOOBNBD_00422 2.A.1.8.1 77.3 1.2e-210 1 463 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
ABOOBNBD_00423 5.A.3.1.1 79.3 0 1 1241 0.9904 5.5067 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
ABOOBNBD_00424 5.A.3.1.1 84.8 5.3e-268 1 506 0.9787 2.2578 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
ABOOBNBD_00426 5.A.3.1.1 77.3 1.4e-100 1 225 1.0000 1.0000 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
ABOOBNBD_00430 3.D.1.9.2 72.8 3.7e-251 1 556 0.9964 2.1843 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.1 The H+ or Na+-translocating NADH Dehydrogenase (NDH) Family
ABOOBNBD_00436 2.A.7.1.4 75 3.5e-38 1 104 1.0000 0.9905 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.7 The Drug/Metabolite Transporter (DMT) Superfamily
ABOOBNBD_00443 2.A.1.4.3 86.8 2.2e-238 1 448 0.9956 0.9912 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
ABOOBNBD_00448 2.A.88.8.6 74 7.8e-83 4 207 0.9107 0.9231 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.88 The Vitamin Uptake Transporter (VUT) Family
ABOOBNBD_00479 2.A.21.1.1 78.3 1.2e-210 3 482 0.9938 0.9917 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
ABOOBNBD_00485 9.B.157.1.3 95.1 6.4e-185 1 347 1.0000 0.9455 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.157 The Cell Shape-determining MreBCD (MreBCD) Family
ABOOBNBD_00509 3.A.1.27.3 80 6.9e-118 7 266 0.9630 1.0359 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00510 3.A.1.27.3 80.7 2.6e-114 1 259 1.0000 1.0319 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00512 3.A.1.27.3 72 1.5e-83 1 209 1.0000 0.8406 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00525 1.A.12.3.1 81.3 1.4e-94 1 209 0.9812 0.9858 1 Channels/Pores 1.A α-Type Channels 1.A.12 The Intracellular Chloride Channel (CLIC) Family
ABOOBNBD_00554 9.B.27.2.2 71.6 3.4e-86 1 215 0.9685 0.9773 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.27 The Death Effector Domain A (DedA) Family
ABOOBNBD_00555 2.A.23.1.13 72.2 1.2e-153 12 411 0.9592 0.9662 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.23 The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family
ABOOBNBD_00582 1.A.33.1.2 87.2 2.20000000000008e-311 1 641 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.33 The Cation Channel-forming Heat Shock Protein-70 (Hsp70) Family
ABOOBNBD_00602 3.D.7.2.5 79.9 3.1e-177 5 368 0.9733 0.9758 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.7 The H<sub>2</sub>:Heterodisulfide Oxidoreductase (HHO) Family
ABOOBNBD_00603 3.D.7.2.5 73.3 4.1e-152 1 337 1.0000 0.8817 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.7 The H<sub>2</sub>:Heterodisulfide Oxidoreductase (HHO) Family
ABOOBNBD_00604 3.D.7.2.5 71.3 1.2e-150 3 377 0.9542 1.0108 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.7 The H<sub>2</sub>:Heterodisulfide Oxidoreductase (HHO) Family
ABOOBNBD_00605 3.D.7.2.5 72.7 5.8e-252 1 567 1.0000 1.5242 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.7 The H<sub>2</sub>:Heterodisulfide Oxidoreductase (HHO) Family
ABOOBNBD_00612 9.B.102.1.1 78.2 5.4e-191 1 395 0.9681 0.9850 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.102 The YedE/YeeE (YedE/YeeE) Family
ABOOBNBD_00643 2.A.6.4.1 79 3.6e-268 1 604 1.0000 1.8700 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
ABOOBNBD_00644 2.A.6.4.1 75.9 4.1e-133 1 322 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
ABOOBNBD_00654 3.A.1.2.1 77.4 3.7e-125 1 296 1.0000 0.9221 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00655 3.A.1.2.1 84.7 6.2e-142 1 321 1.0000 0.9969 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00656 3.A.1.2.1 75.9 2.5e-214 1 494 0.9841 1.5389 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00669 3.D.4.5.1 73.5 8.4e-84 1 203 1.0000 1.8716 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.4 The Proton-translocating Cytochrome Oxidase (COX) Superfamily
ABOOBNBD_00670 3.D.4.5.1 83 0 1 660 1.0000 6.0550 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.4 The Proton-translocating Cytochrome Oxidase (COX) Superfamily
ABOOBNBD_00695 2.A.6.2.2 76.1 0 1 1044 0.9924 0.9933 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
ABOOBNBD_00706 2.A.114.1.10 89.3 0 1 716 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.114 The Putative Peptide Transporter Carbon Starvation CstA (CstA) Family
ABOOBNBD_00726 3.A.1.105.17 82.1 7.7e-137 1 302 0.9649 0.9805 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00727 3.A.1.105.17 76.2 1.6e-111 1 256 1.0000 0.8312 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00745 2.A.8.1.5 79.3 6.3e-193 1 445 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.8 The Gluconate:H+ Symporter (GntP) Family
ABOOBNBD_00748 3.A.1.20.2 70.8 1.9e-281 5 690 0.9913 1.9942 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00749 3.A.1.20.2 75.7 2.9e-145 14 342 0.9592 0.9709 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00797 2.A.17.1.3 77.9 5.7e-219 1 484 0.9837 0.9877 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.17 The Proton-dependent Oligopeptide Transporter (POT/PTR) Family
ABOOBNBD_00823 2.A.68.1.2 71.2 3.5e-211 2 519 0.9885 0.9904 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.68 The p-Aminobenzoyl-glutamate Transporter (AbgT) Family
ABOOBNBD_00849 2.A.3.2.1 82.3 6.7e-203 1 434 0.9819 0.9909 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
ABOOBNBD_00895 3.D.5.1.1 77.4 3.8e-192 1 411 0.9976 1.9571 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.5 The Na+-translocating NADH:Quinone Dehydrogenase (Na-NDH or NQR) Family
ABOOBNBD_00897 3.D.5.1.1 77.8 1e-84 1 207 0.9904 0.9857 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.5 The Na+-translocating NADH:Quinone Dehydrogenase (Na-NDH or NQR) Family
ABOOBNBD_00898 3.D.5.1.1 84.3 2.4e-91 1 198 1.0000 0.9429 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.5 The Na+-translocating NADH:Quinone Dehydrogenase (Na-NDH or NQR) Family
ABOOBNBD_00899 3.D.5.1.1 79.8 8.6e-197 4 408 0.9926 1.9286 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.5 The Na+-translocating NADH:Quinone Dehydrogenase (Na-NDH or NQR) Family
ABOOBNBD_00928 1.A.112.2.5 71.4 4.3e-175 1 423 0.9976 0.9883 1 Channels/Pores 1.A α-Type Channels 1.A.112 The Cyclin M Mg2+ Exporter (CNNM) Family
ABOOBNBD_00930 3.A.5.1.1 87.6 4e-219 1 453 1.0000 2.1990 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.5 The General Secretory Pathway (Sec) Family
ABOOBNBD_00939 2.A.13.1.2 87.2 3e-219 2 447 0.9978 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.13 The C<sub>4</sub>-Dicarboxylate Uptake (Dcu) Family
ABOOBNBD_00957 2.A.1.3.2 72.7 7.3e-222 3 504 0.9941 0.9805 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
ABOOBNBD_00965 3.A.1.12.1 73.9 2.4e-144 1 329 0.9940 0.9266 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00966 3.A.1.12.1 74.6 1.6e-142 55 406 0.8606 0.9859 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00967 3.A.1.12.1 73.1 9.7e-169 1 398 0.9975 1.1243 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00981 2.A.103.1.2 80.5 8.7e-172 1 370 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.103 The Bacterial Murein Precursor Exporter (MPE) Family
ABOOBNBD_00990 3.A.1.3.4 88.4 3.3e-119 1 241 1.0000 0.7980 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00991 3.A.1.3.4 84.3 1.1e-100 1 223 0.9955 0.7384 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00992 3.A.1.3.4 82.1 1.1e-114 1 246 1.0000 0.8146 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_00993 3.A.1.3.4 75.5 6.4e-125 1 297 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01000 1.C.126.1.2 84.1 1.6e-136 1 289 0.9863 0.9932 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.126 The HlyC Haemolysin (HlyC) Family
ABOOBNBD_01137 3.D.4.3.2 80.8 5e-250 1 522 1.0000 14.1081 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.4 The Proton-translocating Cytochrome Oxidase (COX) Superfamily
ABOOBNBD_01145 1.A.30.2.2 83.2 7.6e-102 1 226 0.9912 1.5915 1 Channels/Pores 1.A α-Type Channels 1.A.30 The H+- or Na+-translocating Bacterial Flagellar Motor/ExbBD Outer Membrane Transport Energizer (Mot/Exb) Superfamily
ABOOBNBD_01146 1.A.30.2.2 75.7 2.9e-51 2 141 0.9929 0.9789 1 Channels/Pores 1.A α-Type Channels 1.A.30 The H+- or Na+-translocating Bacterial Flagellar Motor/ExbBD Outer Membrane Transport Energizer (Mot/Exb) Superfamily
ABOOBNBD_01148 2.C.1.2.1 75.4 2.1e-193 1 431 1.0000 1.6350 2 Electrochemical Potential-driven Transporters 2.C Ion-gradient-driven energizers 2.C.1 The TonB-ExbB-ExbD/TolA-TolQ-TolR Outer Membrane Receptor Energizers and Stabilizers (TonB/TolA) Family
ABOOBNBD_01167 3.A.1.8.1 76.2 1.1e-92 1 227 0.9870 0.8833 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01185 3.A.1.105.15 76.1 2e-152 1 368 0.9973 1.1054 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01186 3.A.1.105.15 71.7 1.1e-145 13 383 0.9687 1.1175 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01187 3.A.1.105.15 71.4 2.9e-238 8 580 0.9728 1.7259 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01192 1.E.43.1.1 75 1.1e-23 1 76 0.9268 0.9268 1 Channels/Pores 1.E Holins 1.E.43 The Putative Transglycosylase-associated Holin (T-A Hol) Family
ABOOBNBD_01213 2.A.122.1.1 74 2.2e-88 3 229 0.9742 0.9827 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.122 The LrgB/CidB Holin-like Glycolate/Glycerate Transporter (LrgB/CidB/GGT) Family
ABOOBNBD_01220 2.A.61.1.1 80 6.9e-195 2 451 0.9934 0.9761 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.61 The C<sub>4</sub>-dicarboxylate Uptake C (DcuC) Family
ABOOBNBD_01240 2.A.42.2.1 79.9 5.3e-192 1 432 0.9774 0.9953 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.42 The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family
ABOOBNBD_01249 3.A.1.3.3 71.3 5e-99 1 244 1.0000 0.9959 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01250 3.A.1.3.3 80.2 2.2e-107 1 242 1.0000 0.9959 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01274 1.A.16.1.1 71.5 5.6e-118 1 284 1.0000 0.9965 1 Channels/Pores 1.A α-Type Channels 1.A.16 The Formate-Nitrite Transporter (FNT) Family
ABOOBNBD_01285 3.A.1.106.1 80.3 6.4e-262 2 581 0.9983 0.9966 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01341 1.B.1.1.11 71.8 2.9e-151 1 371 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.1 The General Bacterial Porin (GBP) Family
ABOOBNBD_01350 3.A.1.120.6 73.8 3.2e-270 1 642 0.9984 0.9984 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01501 2.A.3.1.2 85.9 2.5e-238 17 490 0.9576 0.9693 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
ABOOBNBD_01503 2.A.3.1.14 72.7 8.2e-180 12 455 0.9673 0.9823 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
ABOOBNBD_01698 1.B.25.1.19 74.9 7e-208 1 450 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.25 The Outer Membrane Porin (Opr) Family
ABOOBNBD_01700 9.B.1.1.6 81.2 5.2e-127 1 292 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.1 The Integral Membrane CAAX Protease (CAAX Protease) Family
ABOOBNBD_01702 2.A.23.1.8 78 6.3e-196 1 460 0.9935 0.9935 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.23 The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family
ABOOBNBD_01708 3.A.1.15.4 81.7 1.1e-119 1 279 0.9208 0.9394 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01709 3.A.1.15.4 77.4 2.8e-128 6 293 0.9763 0.9697 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01710 3.A.1.15.4 75.4 1.7e-128 10 302 0.9702 0.9865 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01727 4.D.1.1.13 71.7 4.9e-134 1 325 0.9969 1.0000 4 Group Translocators 4.D Polysaccharide Synthase/Exporters 4.D.1 The Putative Vectorial Glycosyl Polymerization (VGP) Family
ABOOBNBD_01769 2.A.53.3.9 75.5 6.1e-233 1 559 0.9876 0.9894 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.53 The Sulfate Permease (SulP) Family
ABOOBNBD_01776 2.A.1.2.21 73.4 2.2e-168 1 398 0.9950 0.9900 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
ABOOBNBD_01778 2.A.66.4.3 76.9 1.7e-221 1 511 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.66 The Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily
ABOOBNBD_01806 3.A.1.15.5 78.1 1.9e-101 1 256 0.9808 0.9808 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01807 3.A.1.15.5 74.7 1.2e-100 1 237 0.9834 0.9080 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01815 2.A.7.1.9 70.6 4.2e-37 2 110 0.9909 0.9008 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.7 The Drug/Metabolite Transporter (DMT) Superfamily
ABOOBNBD_01821 4.C.1.1.4 77.1 9.2e-258 1 554 0.9858 0.9875 4 Group Translocators 4.C Acyl CoA ligase-coupled transporters 4.C.1 The Fatty Acid Group Translocation (FAT) Family
ABOOBNBD_01830 3.A.1.139.2 71 3.9e-94 1 252 0.9844 0.9730 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01854 3.D.2.1.1 83.5 1.8e-239 1 508 0.9980 1.1017 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.2 The Proton-translocating Transhydrogenase (PTH) Family
ABOOBNBD_01855 3.D.2.1.1 88.1 4.5e-226 1 462 1.0000 1.0000 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.2 The Proton-translocating Transhydrogenase (PTH) Family
ABOOBNBD_01882 3.A.1.105.16 75.4 0 9 917 0.9902 2.5324 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01883 3.A.1.105.16 74.9 2.7e-152 5 375 0.9893 1.0451 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_01887 3.A.3.7.1 74.9 5.2e-279 2 685 0.9985 23.3793 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.3 The P-type ATPase (P-ATPase) Superfamily
ABOOBNBD_01893 5.A.3.3.2 82.9 7.6e-109 1 205 1.0000 0.7143 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
ABOOBNBD_01894 5.A.3.3.2 79.8 0 9 813 0.9889 2.8049 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
ABOOBNBD_02045 3.A.1.5.42 71.3 2.7e-225 38 549 0.9094 0.9360 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_02046 3.A.1.5.5 70.1 1.3e-128 1 321 1.0000 1.1978 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_02048 3.A.1.5.44 77.4 6.7e-155 1 328 0.9850 1.2193 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_02049 3.A.1.5.5 71.9 2.2e-108 1 267 0.9926 0.9963 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_02074 2.A.3.7.3 76.7 1.2e-216 1 508 0.9826 0.9961 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
ABOOBNBD_02124 2.A.39.1.1 85.5 1.3e-195 1 406 0.9760 0.9690 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.39 The Nucleobase:Cation Symporter-1 (NCS1) Family
ABOOBNBD_02128 2.A.15.1.4 76.3 1.1e-305 1 679 0.9985 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.15 The Betaine/Carnitine/Choline Transporter (BCCT) Family
ABOOBNBD_02141 3.A.1.5.1 71.8 1.1e-234 1 543 0.9963 1.0074 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_02151 2.A.95.1.7 71.2 3e-76 6 213 0.9720 0.9674 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.95 The 6 TMS Neutral Amino Acid Transporter (NAAT) Family
ABOOBNBD_02178 2.A.34.1.1 71.7 6.4e-197 1 512 0.9961 0.9961 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.34 The NhaB Na+:H+ Antiporter (NhaB) Family
ABOOBNBD_02199 1.A.13.5.1 71.8 2.2e-107 1 245 1.0000 0.9722 1 Channels/Pores 1.A α-Type Channels 1.A.13 The Epithelial Chloride Channel (E-ClC) Family
ABOOBNBD_02247 2.A.40.1.1 82.4 1.1e-189 1 420 0.9700 0.9790 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.40 The Nucleobase/Ascorbate Transporter (NAT) or Nucleobase:Cation Symporter-2 (NCS2) Family
ABOOBNBD_02258 2.A.17.1.2 72.7 9.3e-206 1 488 1.0000 0.9740 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.17 The Proton-dependent Oligopeptide Transporter (POT/PTR) Family
ABOOBNBD_02260 2.A.6.2.12 75.9 0 6 1028 0.9808 0.9980 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
ABOOBNBD_02261 2.A.6.2.12 72.8 0 1 1018 0.9912 0.9932 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
ABOOBNBD_02289 2.A.3.1.7 72.2 9.6e-192 17 469 0.9638 0.9617 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
ABOOBNBD_02291 2.A.21.2.1 74.2 1.7e-210 1 493 0.9980 0.9821 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
ABOOBNBD_02309 3.A.6.2.1 77.6 4.1e-195 1 449 0.9825 1.7045 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.6 The Type III (Virulence-related) Secretory Pathway (IIISP) Family
ABOOBNBD_02316 3.A.6.2.1 75.5 6e-95 16 256 0.9414 0.9129 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.6 The Type III (Virulence-related) Secretory Pathway (IIISP) Family
ABOOBNBD_02335 3.A.6.2.1 76.2 8.7e-298 1 694 0.9971 2.6212 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.6 The Type III (Virulence-related) Secretory Pathway (IIISP) Family
ABOOBNBD_02367 2.A.1.2.20 72 7e-159 9 397 0.9677 0.9534 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
ABOOBNBD_02435 3.D.1.1.1 72.4 4.5e-258 1 611 1.0000 0.9984 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.1 The H+ or Na+-translocating NADH Dehydrogenase (NDH) Family
ABOOBNBD_02440 3.D.1.1.1 72.1 0 4 907 0.9934 1.4747 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.1 The H+ or Na+-translocating NADH Dehydrogenase (NDH) Family
ABOOBNBD_02441 3.D.1.1.1 84.1 3.5e-231 8 454 0.9846 0.7243 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.1 The H+ or Na+-translocating NADH Dehydrogenase (NDH) Family
ABOOBNBD_02443 3.D.1.1.1 85.1 0 1 598 1.0000 0.9723 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.1 The H+ or Na+-translocating NADH Dehydrogenase (NDH) Family
ABOOBNBD_02449 2.A.47.4.8 71.8 1.2e-242 1 609 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.47 The Divalent Anion:Na+ Symporter (DASS) Family
ABOOBNBD_02466 4.A.7.1.2 89 7e-210 1 418 1.0000 4.4000 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.7 The PTS L-Ascorbate (L-Asc) Family
ABOOBNBD_02467 4.A.7.1.2 84.2 3.3e-38 2 96 0.9896 1.0000 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.7 The PTS L-Ascorbate (L-Asc) Family
ABOOBNBD_02475 9.B.160.1.16 74.8 2.2e-63 1 159 0.9755 0.9815 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.160 The Colicin V Production (CvpA) Family
ABOOBNBD_02479 9.B.27.2.3 83 1.1e-100 9 226 0.9356 0.9954 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.27 The Death Effector Domain A (DedA) Family
ABOOBNBD_02505 5.A.3.5.1 71 0 1 759 1.0000 2.9843 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family
ABOOBNBD_02523 2.A.41.1.1 74.9 1.1e-159 1 392 0.9949 0.9950 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.41 The Concentrative Nucleoside Transporter (CNT) Family
ABOOBNBD_02528 8.A.8.1.1 87.1 2.5e-34 1 85 1.0000 1.0000 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.8 The Phosphotransferase System HPr (HPr) Family
ABOOBNBD_02529 8.A.7.1.1 77.9 4.9e-254 1 575 1.0000 1.0000 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.7 The Phosphotransferase System Enzyme I (EI) Family
ABOOBNBD_02533 3.A.1.6.1 72.1 2e-112 1 280 1.0000 1.0108 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_02534 3.A.1.6.1 80.9 4.3e-123 1 277 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_02641 2.A.21.3.2 75.8 7.4e-228 7 544 0.9890 0.9890 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
ABOOBNBD_02713 1.B.20.1.2 99.3 0 1 561 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.20 The Two-Partner Secretion (TPS) Family
ABOOBNBD_02717 3.A.5.1.1 83.8 0 1 901 0.9989 4.3689 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.5 The General Secretory Pathway (Sec) Family
ABOOBNBD_02727 2.A.103.1.1 75.7 4.6e-171 3 397 0.9950 0.9541 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.103 The Bacterial Murein Precursor Exporter (MPE) Family
ABOOBNBD_02729 9.B.146.1.6 88.3 6.9e-182 1 360 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.146 The Putative Undecaprenyl-phosphate N-Acetylglucosaminyl Transferase (MurG) Family
ABOOBNBD_02761 1.A.26.1.4 71.1 6.3e-135 1 357 1.0000 1.0000 1 Channels/Pores 1.A α-Type Channels 1.A.26 The Mg2+ Transporter-E (MgtE) Family
ABOOBNBD_02803 3.A.4.1.1 82.2 2.7e-193 1 426 0.9930 0.9930 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.4 The Arsenite-Antimonite (ArsAB) Efflux Family
ABOOBNBD_02825 8.A.21.2.2 81 2.6e-129 1 305 0.9935 0.9869 8 Accessory Factors Involved in Transport 8.A Auxiliary transport proteins 8.A.21 The Stomatin/Podocin/Band 7/Nephrosis.2/SPFH (Stomatin) Family
ABOOBNBD_02828 3.A.3.5.5 72.7 0 140 984 0.8587 0.9976 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.3 The P-type ATPase (P-ATPase) Superfamily
ABOOBNBD_02833 2.A.37.1.5 71.7 1.3e-214 1 559 0.9539 0.9803 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.37 The Monovalent Cation:Proton Antiporter-2 (CPA2) Family
ABOOBNBD_02907 2.A.3.1.9 71.4 9e-187 1 454 0.9978 0.9743 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
ABOOBNBD_02918 3.A.1.24.1 75.2 2.6e-146 1 343 1.0000 1.5806 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_02919 3.A.1.24.1 83.4 2.7e-96 1 217 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_02920 3.A.1.24.1 78.6 2e-125 1 271 1.0000 1.2488 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_02936 1.B.33.1.3 72.4 0 1 797 1.0000 2.0663 1 Channels/Pores 1.B β-Barrel Porins 1.B.33 The Outer Membrane Protein Insertion Porin (Bam Complex) (OmpIP) Family
ABOOBNBD_02952 4.A.1.1.1 81.1 2.7e-218 1 476 0.9896 0.9979 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.1 The PTS Glucose-Glucoside (Glc) Family
ABOOBNBD_02985 3.A.1.19.1 70.1 1.7e-205 4 524 0.9905 1.5933 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_03001 1.B.12.5.3 99.5 0 1 1084 1.0000 1.0000 1 Channels/Pores 1.B β-Barrel Porins 1.B.12 The Autotransporter-1 (AT-1) Family
ABOOBNBD_03023 9.B.31.1.1 78.7 1.2e-88 1 202 0.9266 0.9854 9 Incompletely Characterized Transport Systems 9.B Putative transport proteins 9.B.31 The PlsY/YqiH (PlsY) Family
ABOOBNBD_03052 2.A.109.1.1 88.5 3.7e-169 1 338 0.9912 0.9769 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.109 The Tellurium Ion Resistance (TerC) Family
ABOOBNBD_03085 2.A.41.2.11 71 3.3e-162 1 424 0.9792 0.9976 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.41 The Concentrative Nucleoside Transporter (CNT) Family
ABOOBNBD_03125 2.A.51.1.7 99.5 5.1e-210 1 376 0.9377 0.9666 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.51 The Chromate Ion Transporter (CHR) Family
ABOOBNBD_03167 2.A.1.2.102 99.2 1.1e-215 1 396 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
ABOOBNBD_03213 2.A.1.2.110 98.3 3.4e-214 1 404 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
ABOOBNBD_03237 4.B.1.1.1 82 1.3e-200 1 406 0.9807 1.6987 4 Group Translocators 4.B Nicotinamide ribonucleoside uptake transporters 4.B.1 The Nicotinamide Ribonucleoside (NR) Uptake Permease (PnuC) Family
ABOOBNBD_03254 3.D.1.9.1 78.1 2e-271 16 577 0.9740 1.7333 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.1 The H+ or Na+-translocating NADH Dehydrogenase (NDH) Family
ABOOBNBD_03257 3.D.1.9.1 70.7 1.4e-190 1 478 0.9979 1.5175 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.1 The H+ or Na+-translocating NADH Dehydrogenase (NDH) Family
ABOOBNBD_03258 3.D.1.9.1 70.1 3e-112 14 317 0.9590 0.9651 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.1 The H+ or Na+-translocating NADH Dehydrogenase (NDH) Family
ABOOBNBD_03280 2.A.13.1.1 82.8 6.5e-190 1 441 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.13 The C<sub>4</sub>-Dicarboxylate Uptake (Dcu) Family
ABOOBNBD_03300 2.A.1.1.114 77.4 1.5e-199 1 437 0.9932 0.9887 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
ABOOBNBD_03305 2.A.15.2.2 100 7.4e-299 1 504 1.0000 0.9805 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.15 The Betaine/Carnitine/Choline Transporter (BCCT) Family
ABOOBNBD_03308 4.C.1.1.6 71.8 3.2e-228 1 518 1.0000 1.0000 4 Group Translocators 4.C Acyl CoA ligase-coupled transporters 4.C.1 The Fatty Acid Group Translocation (FAT) Family
ABOOBNBD_03324 2.A.8.1.8 77.1 3.7e-193 1 445 1.0000 0.9978 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.8 The Gluconate:H+ Symporter (GntP) Family
ABOOBNBD_03335 1.C.36.3.4 99.9 0 1 719 1.0000 1.0000 1 Channels/Pores 1.C Pore-Forming Toxins (Proteins and Peptides) 1.C.36 The Bacterial Type III-Target Cell Pore (IIITCP) Family
ABOOBNBD_03360 2.A.6.2.32 77.1 0 1 1021 0.9961 6.8986 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
ABOOBNBD_03372 1.S.1.1.11 83.5 2.5e-35 1 91 0.9891 0.9681 1 Channels/Pores 1.S Bacterial Micro/NanoCompartment Shell Protein Pores 1.S.1 The Bacterial Microcompartment Shell/Pore-forming Protein-1 (BMC-SP1) Family
ABOOBNBD_03373 1.S.1.1.11 88.3 9e-41 1 94 1.0000 1.0000 1 Channels/Pores 1.S Bacterial Micro/NanoCompartment Shell Protein Pores 1.S.1 The Bacterial Microcompartment Shell/Pore-forming Protein-1 (BMC-SP1) Family
ABOOBNBD_03374 1.S.1.1.11 94.5 5.2e-41 1 91 0.9891 0.9681 1 Channels/Pores 1.S Bacterial Micro/NanoCompartment Shell Protein Pores 1.S.1 The Bacterial Microcompartment Shell/Pore-forming Protein-1 (BMC-SP1) Family
ABOOBNBD_03386 3.A.1.11.1 78.7 3.3e-165 1 347 1.0000 0.9206 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_03388 3.A.1.11.1 82.9 5e-127 12 286 0.9615 0.7275 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_03389 3.A.1.11.1 80.4 3.7e-170 3 370 0.9919 0.9735 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_03398 2.A.42.2.4 84.3 9.3e-205 1 443 1.0000 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.42 The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family
ABOOBNBD_03499 3.A.1.5.27 77.2 1.8e-139 4 327 0.9730 1.0949 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_03500 3.A.1.5.27 74.4 3.2e-141 1 324 0.9908 1.0983 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_03518 1.A.62.2.3 72.1 2.2e-76 1 204 0.9951 0.9902 1 Channels/Pores 1.A α-Type Channels 1.A.62 The Homotrimeric Cation Channel (TRIC) Family
ABOOBNBD_03524 2.A.27.1.1 78.2 1.5e-169 1 399 0.9876 0.9950 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.27 The Glutamate:Na+ Symporter (ESS) Family
ABOOBNBD_03525 2.A.40.4.2 82.2 3.4e-205 10 463 0.9806 0.9827 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.40 The Nucleobase/Ascorbate Transporter (NAT) or Nucleobase:Cation Symporter-2 (NCS2) Family
ABOOBNBD_03550 3.A.1.7.1 77.2 1.8e-155 1 346 1.0000 1.0846 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_03551 3.A.1.7.1 85.3 1.8e-149 1 319 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_03552 3.A.1.7.1 82.9 3.1e-135 9 300 0.9733 0.9185 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_03553 3.A.1.7.1 92.1 7.7e-135 6 258 0.9806 0.7931 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
ABOOBNBD_03572 2.A.40.7.6 77.6 2.1e-183 11 444 0.9602 0.9753 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.40 The Nucleobase/Ascorbate Transporter (NAT) or Nucleobase:Cation Symporter-2 (NCS2) Family
ABOOBNBD_03578 9.A.8.1.1 71.9 0 1 776 1.0000 1.0000 9 Incompletely Characterized Transport Systems 9.A Recognized transporters of unknown biochemical mechanism 9.A.8 The Ferrous Iron Uptake (FeoB) Family
ABOOBNBD_03611 4.A.3.2.1 73.9 5e-41 1 115 1.0000 1.0849 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.3 The PTS Lactose-N,N'-Diacetylchitobiose-β-glucoside (Lac) Family
ABOOBNBD_03612 4.A.3.2.1 88.7 7.2e-229 1 452 1.0000 4.2642 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.3 The PTS Lactose-N,N'-Diacetylchitobiose-β-glucoside (Lac) Family
ABOOBNBD_03613 4.A.3.2.1 87.6 1.1e-45 1 105 0.9722 0.9906 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.3 The PTS Lactose-N,N'-Diacetylchitobiose-β-glucoside (Lac) Family
ABOOBNBD_03633 2.A.21.3.10 84.1 3.7e-234 1 490 0.9879 0.9839 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
ABOOBNBD_03670 2.A.20.1.1 72.3 1.6e-200 14 509 0.9688 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.20 The Inorganic Phosphate Transporter (PiT) Family
ABOOBNBD_03697 2.A.21.7.2 80.3 7.7e-233 20 551 0.9655 0.9672 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.21 The Solute:Sodium Symporter (SSS) Family
ABOOBNBD_03719 3.A.2.1.1 81.2 9.4e-123 4 274 0.9891 3.4177 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.2 The H+- or Na+-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily
ABOOBNBD_03720 3.A.2.1.1 97.5 3.1e-34 1 79 1.0000 1.0000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.2 The H+- or Na+-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily
ABOOBNBD_03721 3.A.2.1.1 87.8 4.3e-64 1 156 1.0000 1.9747 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.2 The H+- or Na+-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily
ABOOBNBD_03722 3.A.2.1.1 75.1 3.6e-67 1 177 1.0000 2.2405 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.2 The H+- or Na+-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily
ABOOBNBD_03723 3.A.2.1.1 92 9e-268 1 513 1.0000 6.4937 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.2 The H+- or Na+-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily
ABOOBNBD_03724 3.A.2.1.1 87.1 9.8e-139 1 287 1.0000 3.6329 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.2 The H+- or Na+-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily
ABOOBNBD_03725 3.A.2.1.1 93.9 2.4e-248 1 460 1.0000 5.8228 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.2 The H+- or Na+-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily
ABOOBNBD_03726 3.A.2.1.1 78.4 3.6e-54 5 138 0.9710 1.6962 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.2 The H+- or Na+-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily
ABOOBNBD_03779 5.A.3.2.1 76.4 0 1 802 0.9988 0.7901 5 Transmembrane Electron Carriers 5.A Transmembrane 2-electron transfer carriers 5.A.3 The Prokaryotic Molybdopterin-containing Oxidoreductase (PMO) Family