Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1407
  Reference Plasmid   NZ_OP227220.1
  Reference Plasmid Size   79993
  Reference Plasmid GC Content   0.37
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0209249 FPOGNJNC_00014 5628 3 Gut 0.38 protein_coding synonymous_variant LOW 1812C>T Pro604Pro
M0209250 FPOGNJNC_00014 5697 3 Gut 0.38 protein_coding synonymous_variant LOW 1743T>C Thr581Thr
M0209251 FPOGNJNC_00014 5703 3 Gut 0.38 protein_coding synonymous_variant LOW 1737T>C Pro579Pro
M0209252 FPOGNJNC_00014 5826 3 Gut 0.38 protein_coding synonymous_variant LOW 1614T>C Ala538Ala
M0209253 FPOGNJNC_00014 5859 3 Gut 0.38 protein_coding synonymous_variant LOW 1581T>C Ser527Ser
M0209254 FPOGNJNC_00014 5931 3 Gut 0.38 protein_coding synonymous_variant LOW 1509A>C Thr503Thr
M0209255 FPOGNJNC_00014 6102 3 Gut 0.38 protein_coding synonymous_variant LOW 1338C>T Ser446Ser
M0209256 FPOGNJNC_00014 6444 3 Gut 0.38 protein_coding synonymous_variant LOW 996A>G Val332Val
M0209257 FPOGNJNC_00014 6465 3 Gut 0.38 protein_coding synonymous_variant LOW 975T>A Ser325Ser
M0209258 FPOGNJNC_00014 6502 3 Gut 0.38 protein_coding missense_variant MODERATE 938A>G Lys313Arg
M0209259 FPOGNJNC_00014 6519 3 Gut 0.38 protein_coding missense_variant MODERATE 921A>T Lys307Asn
M0209260 FPOGNJNC_00014 7011 3 Gut 0.38 protein_coding synonymous_variant LOW 429T>G Pro143Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term