Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1413
  Reference Plasmid   NZ_OQ344286.1
  Reference Plasmid Size   82588
  Reference Plasmid GC Content   0.51
  Reference Plasmid Mobility Type   conjugative





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0209462 FPMHFLJJ_00091 73418 3 Gut 1.00 protein_coding missense_variant MODERATE 43A>C Asn15His
M0209463 FPMHFLJJ_00091 73495 3 Gut 1.00 protein_coding synonymous_variant LOW 120A>G Pro40Pro
M0209464 FPMHFLJJ_00091 73510 3 Gut 1.00 protein_coding synonymous_variant LOW 135G>T Pro45Pro
M0209465 FPMHFLJJ_00091 73540 3 Gut 1.00 protein_coding synonymous_variant LOW 165G>A Val55Val
M0209466 FPMHFLJJ_00091 73581 3 Gut 1.00 protein_coding missense_variant MODERATE 206T>G Phe69Cys
M0209467 FPMHFLJJ_00091 73607 3 Gut 1.00 protein_coding missense_variant MODERATE 232G>A Gly78Arg
M0209468 FPMHFLJJ_00091 73612 3 Gut 1.00 protein_coding synonymous_variant LOW 237C>T Cys79Cys
M0209469 FPMHFLJJ_00091 73614 3 Gut 1.00 protein_coding missense_variant MODERATE 239G>T Arg80Met
M0209470 FPMHFLJJ_00091 73624 3 Gut 1.00 protein_coding synonymous_variant LOW 249T>C Asp83Asp
M0209471 FPMHFLJJ_00091 73640 3 Gut 1.00 protein_coding missense_variant MODERATE 265C>G His89Asp
M0209472 FPMHFLJJ_00091 73683 3 Gut 1.00 protein_coding missense_variant MODERATE 308C>T Ala103Val
M0209473 FPMHFLJJ_00091 73718 3 Gut 1.00 protein_coding missense_variant MODERATE 343G>A Gly115Arg
M0209474 FPMHFLJJ_00091 73781 3 Gut 1.00 protein_coding missense_variant MODERATE 406T>G Phe136Val
M0209475 FPMHFLJJ_00091 73782 3 Gut 1.00 protein_coding missense_variant MODERATE 407T>G Phe136Cys
M0209476 FPMHFLJJ_00085 73930 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4666T>C None
M0209477 FPMHFLJJ_00085 74001 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4737G>T None
M0209478 FPMHFLJJ_00085 74003 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4739C>T None
M0209479 FPMHFLJJ_00085 74004 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4740A>C None
M0209480 FPMHFLJJ_00085 74038 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4774G>C None
M0209481 FPMHFLJJ_00085 74088 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4824T>C None
M0209482 FPMHFLJJ_00085 74094 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4830T>C None
M0209483 FPMHFLJJ_00085 74120 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4856G>T None
M0209484 FPMHFLJJ_00085 74122 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4858A>G None
M0209485 FPMHFLJJ_00085 74124 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4860A>T None
M0209486 FPMHFLJJ_00092 74131 3 Gut 1.00 protein_coding synonymous_variant LOW 558G>T Arg186Arg
M0209487 FPMHFLJJ_00092 74160 3 Gut 1.00 protein_coding missense_variant MODERATE 529C>A Arg177Ser
M0209488 FPMHFLJJ_00092 74176 3 Gut 1.00 protein_coding synonymous_variant LOW 513C>T Gly171Gly
M0209489 FPMHFLJJ_00092 74182 3 Gut 1.00 protein_coding synonymous_variant LOW 507G>T Pro169Pro
M0209490 FPMHFLJJ_00092 74385 3 Gut 1.00 protein_coding missense_variant MODERATE 304G>T Gly102Cys
M0209491 FPMHFLJJ_00092 74413 3 Gut 1.00 protein_coding missense_variant MODERATE 276C>A Asp92Glu
M0209492 FPMHFLJJ_00092 74443 3 Gut 1.00 protein_coding synonymous_variant LOW 246T>C Ile82Ile
M0209493 FPMHFLJJ_00092 74444 3 Gut 1.00 protein_coding missense_variant MODERATE 245T>G Ile82Ser
M0209494 FPMHFLJJ_00092 74503 3 Gut 1.00 protein_coding synonymous_variant LOW 186G>A Gly62Gly
M0209495 FPMHFLJJ_00092 74509 3 Gut 1.00 protein_coding synonymous_variant LOW 180C>G Gly60Gly
M0209496 FPMHFLJJ_00086 74728 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4745T>G None
M0209497 FPMHFLJJ_00093 74752 3 Gut 1.00 protein_coding missense_variant MODERATE 1345G>A Glu449Lys
M0209498 FPMHFLJJ_00093 74756 3 Gut 1.00 protein_coding synonymous_variant LOW 1341C>T Ile447Ile
M0209499 FPMHFLJJ_00093 74789 3 Gut 1.00 protein_coding synonymous_variant LOW 1308C>T Arg436Arg
M0209500 FPMHFLJJ_00093 74803 3 Gut 1.00 protein_coding missense_variant MODERATE 1294G>A Asp432Asn
M0209501 FPMHFLJJ_00093 74901 3 Gut 1.00 protein_coding missense_variant MODERATE 1196G>C Arg399Thr
M0209502 FPMHFLJJ_00093 74960 3 Gut 1.00 protein_coding synonymous_variant LOW 1137C>T Ser379Ser
M0209503 FPMHFLJJ_00093 74968 3 Gut 1.00 protein_coding missense_variant MODERATE 1129A>G Ile377Val
M0209504 FPMHFLJJ_00093 75041 3 Gut 1.00 protein_coding synonymous_variant LOW 1056G>C Gly352Gly
M0209505 FPMHFLJJ_00093 75059 3 Gut 1.00 protein_coding synonymous_variant LOW 1038G>A Pro346Pro
M0209506 FPMHFLJJ_00093 75488 3 Gut 1.00 protein_coding synonymous_variant LOW 609G>A Ala203Ala
M0209507 FPMHFLJJ_00093 75509 3 Gut 1.00 protein_coding synonymous_variant LOW 588A>C Arg196Arg
M0209508 FPMHFLJJ_00093 75536 3 Gut 1.00 protein_coding synonymous_variant LOW 561T>C Arg187Arg
M0209509 FPMHFLJJ_00093 75551 3 Gut 1.00 protein_coding synonymous_variant LOW 546T>C Asp182Asp
M0209510 FPMHFLJJ_00093 75582 3 Gut 1.00 protein_coding missense_variant MODERATE 515G>T Arg172Leu
M0209511 FPMHFLJJ_00093 75602 3 Gut 1.00 protein_coding synonymous_variant LOW 495A>G Glu165Glu
M0209512 FPMHFLJJ_00093 75908 3 Gut 1.00 protein_coding synonymous_variant LOW 189A>G Ala63Ala
M0209513 FPMHFLJJ_00093 75929 3 Gut 1.00 protein_coding synonymous_variant LOW 168C>A Pro56Pro
M0209514 FPMHFLJJ_00093 75956 3 Gut 1.00 protein_coding synonymous_variant LOW 141G>C Val47Val
M0209515 FPMHFLJJ_00093 75971 3 Gut 1.00 protein_coding synonymous_variant LOW 126A>G Glu42Glu
M0209516 FPMHFLJJ_00093 75975 3 Gut 1.00 protein_coding missense_variant MODERATE 122A>C Gln41Pro
M0209517 FPMHFLJJ_00093 75980 3 Gut 1.00 protein_coding synonymous_variant LOW 117T>C Leu39Leu
M0209518 FPMHFLJJ_00093 75983 3 Gut 1.00 protein_coding synonymous_variant LOW 114T>C Arg38Arg
M0209519 FPMHFLJJ_00094 76196 3 Gut 1.00 protein_coding synonymous_variant LOW 183C>T Ala61Ala
M0209520 FPMHFLJJ_00088 76486 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4059C>T None
M0209521 FPMHFLJJ_00088 76496 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4069G>A None
M0209522 FPMHFLJJ_00088 76543 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4116G>A None
M0209523 FPMHFLJJ_00088 76562 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4135T>G None
M0209524 FPMHFLJJ_00088 76571 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4144T>C None
M0209525 FPMHFLJJ_00088 76750 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4323G>C None
M0209526 FPMHFLJJ_00088 76780 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4353A>G None
M0209527 FPMHFLJJ_00088 76870 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4443A>T None
M0209528 FPMHFLJJ_00088 76948 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4521G>C None
M0209529 FPMHFLJJ_00088 76982 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4555C>T None
M0209530 FPMHFLJJ_00088 77006 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4579T>C None
M0209531 FPMHFLJJ_00088 77007 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4580C>T None
M0209532 FPMHFLJJ_00088 77010 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4583A>G None
M0209533 FPMHFLJJ_00088 77022 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4595T>A None
M0209534 FPMHFLJJ_00088 77023 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4596T>A None
M0209535 FPMHFLJJ_00088 77107 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4680T>C None
M0209536 FPMHFLJJ_00088 77185 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4758G>T None
M0209537 FPMHFLJJ_00088 77195 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4768T>C None
M0209538 FPMHFLJJ_00088 77221 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4794C>T None
M0209539 FPMHFLJJ_00088 77230 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4803A>C None
M0209540 FPMHFLJJ_00088 77234 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -4807C>T None
M0209541 FPMHFLJJ_00095 77469 3 Gut 1.00 protein_coding missense_variant MODERATE 131T>C Val44Ala
M0209542 FPMHFLJJ_00095 77497 3 Gut 1.00 protein_coding missense_variant MODERATE 103A>G Ile35Val
M0209543 FPMHFLJJ_00095 77537 3 Gut 1.00 protein_coding synonymous_variant LOW 63G>A Arg21Arg
M0209544 FPMHFLJJ_00095 77555 3 Gut 1.00 protein_coding synonymous_variant LOW 45G>A Arg15Arg
M0209545 FPMHFLJJ_00095 77556 3 Gut 1.00 protein_coding missense_variant MODERATE 44G>A Arg15Lys
M0209546 FPMHFLJJ_00095 77564 3 Gut 1.00 protein_coding synonymous_variant LOW 36T>C Arg12Arg
M0209547 FPMHFLJJ_00096 77605 3 Gut 1.00 protein_coding synonymous_variant LOW 414G>C Thr138Thr
M0209548 FPMHFLJJ_00096 77606 3 Gut 1.00 protein_coding missense_variant MODERATE 413C>A Thr138Lys
M0209549 FPMHFLJJ_00096 77607 3 Gut 1.00 protein_coding missense_variant MODERATE 412A>C Thr138Pro
M0209550 FPMHFLJJ_00096 77653 3 Gut 1.00 protein_coding synonymous_variant LOW 366G>A Glu122Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
FPMHFLJJ_00014 VFG002039 Heat-stable toxin (ST) 100 7.4e-36 1 72 1.0 1 Exotoxin heat stable enterotoxin I experiment
FPMHFLJJ_00014 VFG002039 Heat-stable toxin (ST) 100 5.5e-35 1 72 1.0 1 Exotoxin heat stable enterotoxin I prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
FPMHFLJJ_00079 ATB75804.1|GH23 100 5.79e-123 1 169 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
FPMHFLJJ_00037 1.E.53.1.11 98.5 3.2e-32 1 68 1.0000 1.0000 1 Channels/Pores 1.E Holins 1.E.53 The Toxic Hok/Gef Protein (Hok/Gef) Family