Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1423
  Reference Plasmid   NZ_OY725718.1
  Reference Plasmid Size   27038
  Reference Plasmid GC Content   0.55
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0209963 GOKCFICI_00008 10866 4 Gut 0.22 protein_coding synonymous_variant LOW 903T>C Asp301Asp
M0209964 GOKCFICI_00008 11040 4 Gut 0.22 protein_coding synonymous_variant LOW 729T>C Gly243Gly
M0209965 GOKCFICI_00008 11079 4 Gut 0.22 protein_coding synonymous_variant LOW 690A>G Ser230Ser
M0209966 GOKCFICI_00008 11130 4 Gut 0.22 protein_coding synonymous_variant LOW 639T>C Arg213Arg
M0209967 GOKCFICI_00008 11595 4 Gut 0.22 protein_coding synonymous_variant LOW 174A>G Gln58Gln
M0209968 GOKCFICI_00006 9555 3 Gut 0.17 protein_coding synonymous_variant LOW 1617A>G Arg539Arg
M0209969 GOKCFICI_00006 9589 3 Gut 0.17 protein_coding missense_variant MODERATE 1651A>G Thr551Ala
M0209970 GOKCFICI_00006 9591 3 Gut 0.17 protein_coding synonymous_variant LOW 1653A>G Thr551Thr
M0209971 GOKCFICI_00006 9597 3 Gut 0.17 protein_coding synonymous_variant LOW 1659C>A Gly553Gly
M0209972 GOKCFICI_00007 9779 3 Gut 0.17 protein_coding missense_variant MODERATE 25C>T Pro9Ser
M0209973 GOKCFICI_00007 9814 3 Gut 0.17 protein_coding synonymous_variant LOW 60T>C Leu20Leu
M0209974 GOKCFICI_00007 9865 3 Gut 0.17 protein_coding synonymous_variant LOW 111A>G Gly37Gly
M0209975 GOKCFICI_00007 9866 3 Gut 0.17 protein_coding missense_variant MODERATE 112A>G Lys38Glu
M0209976 GOKCFICI_00007 9883 3 Gut 0.17 protein_coding synonymous_variant LOW 129G>A Glu43Glu
M0209977 GOKCFICI_00007 9886 3 Gut 0.17 protein_coding synonymous_variant LOW 132T>C Pro44Pro
M0209978 GOKCFICI_00007 9896 3 Gut 0.17 protein_coding missense_variant MODERATE 142A>G Ser48Gly
M0209979 GOKCFICI_00007 9897 3 Gut 0.17 protein_coding missense_variant MODERATE 143G>C Ser48Thr
M0209980 GOKCFICI_00007 9898 3 Gut 0.17 protein_coding synonymous_variant LOW 144C>T Ser48Ser
M0209981 GOKCFICI_00007 10015 3 Gut 0.17 protein_coding missense_variant MODERATE 261T>A Asn87Lys
M0209982 GOKCFICI_00007 10017 3 Gut 0.17 protein_coding missense_variant MODERATE 263C>T Ala88Val
M0209983 GOKCFICI_00007 10049 3 Gut 0.17 protein_coding missense_variant MODERATE 295C>A His99Asn
M0209984 GOKCFICI_00004 10110 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4238A>G None
M0209985 GOKCFICI_00004 10122 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4250G>A None
M0209986 GOKCFICI_00004 10156 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4284G>A None
M0209987 GOKCFICI_00004 10159 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4287C>T None
M0209988 GOKCFICI_00004 10199 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4327T>G None
M0209989 GOKCFICI_00004 10243 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4371A>G None
M0209990 GOKCFICI_00008 11882 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -114C>T None
M0209991 GOKCFICI_00008 11884 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -116A>G None
M0209992 GOKCFICI_00023 23875 3 Gut 0.17 protein_coding missense_variant MODERATE 629T>C Val210Ala
M0209993 GOKCFICI_00023 23879 3 Gut 0.17 protein_coding synonymous_variant LOW 633T>C Ile211Ile
M0209994 GOKCFICI_00024 23953 3 Gut 0.17 protein_coding synonymous_variant LOW 72C>G Gly24Gly
M0209995 GOKCFICI_00024 23957 3 Gut 0.17 protein_coding missense_variant MODERATE 76A>G Ser26Gly
M0209996 GOKCFICI_00024 23969 3 Gut 0.17 protein_coding missense_variant MODERATE 88A>G Asn30Asp
M0209997 GOKCFICI_00024 23971 3 Gut 0.17 protein_coding synonymous_variant LOW 90T>C Asn30Asn
M0209998 GOKCFICI_00024 23977 3 Gut 0.17 protein_coding synonymous_variant LOW 96C>T Tyr32Tyr
M0209999 GOKCFICI_00024 23986 3 Gut 0.17 protein_coding synonymous_variant LOW 105C>T Val35Val
M0210000 GOKCFICI_00024 23992 3 Gut 0.17 protein_coding synonymous_variant LOW 111C>T Gly37Gly
M0210001 GOKCFICI_00024 24011 3 Gut 0.17 protein_coding missense_variant MODERATE 130G>A Gly44Ser
M0210002 GOKCFICI_00024 24012 3 Gut 0.17 protein_coding missense_variant MODERATE 131G>A Gly44Asp
M0210003 GOKCFICI_00024 24073 3 Gut 0.17 protein_coding synonymous_variant LOW 192T>C Leu64Leu
M0210004 GOKCFICI_00024 24127 4 Gut 0.22 protein_coding synonymous_variant LOW 246G>A Glu82Glu
M0210005 GOKCFICI_00024 24209 5 Gut 0.28 protein_coding missense_variant MODERATE 328A>G Asn110Asp
M0210006 GOKCFICI_00024 24305 5 Gut 0.28 protein_coding missense_variant MODERATE 424A>G Lys142Glu
M0210007 GOKCFICI_00024 24395 5 Gut 0.28 protein_coding missense_variant MODERATE 514A>C Ile172Leu
M0210008 GOKCFICI_00024 24567 3 Gut 0.17 protein_coding missense_variant MODERATE 686T>C Val229Ala
M0210009 GOKCFICI_00025 24651 3 Gut 0.17 protein_coding synonymous_variant LOW 45T>C Tyr15Tyr
M0210010 GOKCFICI_00025 24663 3 Gut 0.17 protein_coding synonymous_variant LOW 57A>G Arg19Arg
M0210011 GOKCFICI_00025 24674 3 Gut 0.17 protein_coding missense_variant MODERATE 68A>G Lys23Arg
M0210012 GOKCFICI_00025 24675 3 Gut 0.17 protein_coding synonymous_variant LOW 69A>G Lys23Lys
M0210013 GOKCFICI_00025 24686 3 Gut 0.17 protein_coding missense_variant MODERATE 80C>T Pro27Leu
M0210014 GOKCFICI_00025 24690 3 Gut 0.17 protein_coding synonymous_variant LOW 84G>C Gly28Gly
M0210015 GOKCFICI_00025 24726 3 Gut 0.17 protein_coding synonymous_variant LOW 120G>C Ala40Ala
M0210016 GOKCFICI_00025 25050 3 Gut 0.17 protein_coding missense_variant MODERATE 444C>A Asp148Glu
M0210017 GOKCFICI_00025 25088 3 Gut 0.17 protein_coding missense_variant MODERATE 482C>T Ala161Val
M0210018 GOKCFICI_00004 4886 3 Gut 0.17 protein_coding synonymous_variant LOW 987C>T Asp329Asp
M0210019 GOKCFICI_00004 5027 3 Gut 0.17 protein_coding synonymous_variant LOW 846A>G Ala282Ala
M0210020 GOKCFICI_00004 5135 3 Gut 0.17 protein_coding synonymous_variant LOW 738A>G Glu246Glu
M0210021 GOKCFICI_00004 5138 3 Gut 0.17 protein_coding synonymous_variant LOW 735A>G Lys245Lys
M0210022 GOKCFICI_00004 5147 3 Gut 0.17 protein_coding synonymous_variant LOW 726A>C Leu242Leu
M0210023 GOKCFICI_00023 23318 4 Gut 0.22 protein_coding synonymous_variant LOW 72A>G Glu24Glu
M0210024 GOKCFICI_00023 23348 4 Gut 0.22 protein_coding synonymous_variant LOW 102T>C Val34Val
M0210025 GOKCFICI_00023 23353 4 Gut 0.22 protein_coding missense_variant MODERATE 107G>A Ser36Asn
M0210026 GOKCFICI_00023 23365 3 Gut 0.17 protein_coding missense_variant MODERATE 119G>A Arg40Lys
M0210027 GOKCFICI_00023 23437 4 Gut 0.22 protein_coding missense_variant MODERATE 191C>G Ala64Gly
M0210028 GOKCFICI_00023 23438 4 Gut 0.22 protein_coding synonymous_variant LOW 192C>G Ala64Ala
M0210029 GOKCFICI_00023 23449 3 Gut 0.17 protein_coding missense_variant MODERATE 203G>A Arg68Gln
M0210030 GOKCFICI_00023 23519 4 Gut 0.22 protein_coding synonymous_variant LOW 273T>G Ala91Ala
M0210031 GOKCFICI_00023 23522 4 Gut 0.22 protein_coding synonymous_variant LOW 276T>C Gly92Gly
M0210032 GOKCFICI_00023 23525 3 Gut 0.17 protein_coding synonymous_variant LOW 279C>G Ala93Ala
M0210033 GOKCFICI_00023 23529 4 Gut 0.22 protein_coding missense_variant MODERATE 283G>A Ala95Thr
M0210034 GOKCFICI_00023 23612 4 Gut 0.22 protein_coding synonymous_variant LOW 366T>C Gly122Gly
M0210035 GOKCFICI_00023 23616 4 Gut 0.22 protein_coding missense_variant MODERATE 370G>A Gly124Ser
M0210036 GOKCFICI_00023 23791 4 Gut 0.22 protein_coding missense_variant MODERATE 545A>G Asp182Gly
M0210037 GOKCFICI_00004 5198 3 Gut 0.17 protein_coding synonymous_variant LOW 675G>A Ser225Ser
M0210038 GOKCFICI_00004 5235 3 Gut 0.17 protein_coding missense_variant MODERATE 638T>C Val213Ala
M0210039 GOKCFICI_00004 7249 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -1377C>T None
M0210040 GOKCFICI_00004 7705 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -1833A>G None
M0210041 GOKCFICI_00004 7811 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -1939G>A None
M0210042 GOKCFICI_00004 7895 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2023G>A None
M0210043 GOKCFICI_00004 7897 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2025A>G None
M0210044 GOKCFICI_00004 7899 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2027T>A None
M0210045 GOKCFICI_00004 7914 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2042A>G None
M0210046 GOKCFICI_00004 7921 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2049T>C None
M0210047 GOKCFICI_00004 7926 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2054A>G None
M0210048 GOKCFICI_00006 7979 3 Gut 0.17 protein_coding missense_variant MODERATE 41G>A Arg14Lys
M0210049 GOKCFICI_00006 8055 3 Gut 0.17 protein_coding synonymous_variant LOW 117A>G Gly39Gly
M0210050 GOKCFICI_00006 8152 3 Gut 0.17 protein_coding missense_variant MODERATE 214A>G Asn72Asp
M0210051 GOKCFICI_00006 8220 3 Gut 0.17 protein_coding synonymous_variant LOW 282T>C Asp94Asp
M0210052 GOKCFICI_00006 8249 3 Gut 0.17 protein_coding missense_variant MODERATE 311G>A Gly104Asp
M0210053 GOKCFICI_00006 8253 3 Gut 0.17 protein_coding synonymous_variant LOW 315A>G Glu105Glu
M0210054 GOKCFICI_00006 8280 3 Gut 0.17 protein_coding synonymous_variant LOW 342A>G Gly114Gly
M0210055 GOKCFICI_00006 8285 3 Gut 0.17 protein_coding missense_variant MODERATE 347G>A Arg116Gln
M0210056 GOKCFICI_00006 8286 3 Gut 0.17 protein_coding synonymous_variant LOW 348A>G Arg116Arg
M0210057 GOKCFICI_00006 8301 3 Gut 0.17 protein_coding synonymous_variant LOW 363G>A Ala121Ala
M0210058 GOKCFICI_00006 8303 3 Gut 0.17 protein_coding missense_variant MODERATE 365C>A Ala122Glu
M0210059 GOKCFICI_00006 8319 3 Gut 0.17 protein_coding synonymous_variant LOW 381T>C Arg127Arg
M0210060 GOKCFICI_00006 8341 3 Gut 0.17 protein_coding missense_variant MODERATE 403A>G Thr135Ala
M0210061 GOKCFICI_00006 8363 3 Gut 0.17 protein_coding missense_variant MODERATE 425G>A Ser142Asn
M0210062 GOKCFICI_00006 8373 3 Gut 0.17 protein_coding synonymous_variant LOW 435A>G Pro145Pro
M0210063 GOKCFICI_00006 8379 3 Gut 0.17 protein_coding synonymous_variant LOW 441T>C Leu147Leu
M0210064 GOKCFICI_00006 8391 3 Gut 0.17 protein_coding synonymous_variant LOW 453T>C Pro151Pro
M0210065 GOKCFICI_00006 8398 3 Gut 0.17 protein_coding missense_variant MODERATE 460G>A Val154Ile
M0210066 GOKCFICI_00006 8404 3 Gut 0.17 protein_coding missense_variant MODERATE 466A>C Thr156Pro
M0210067 GOKCFICI_00006 8405 3 Gut 0.17 protein_coding missense_variant MODERATE 467C>A Thr156Lys
M0210068 GOKCFICI_00006 8415 3 Gut 0.17 protein_coding synonymous_variant LOW 477T>C Ser159Ser
M0210069 GOKCFICI_00006 8475 3 Gut 0.17 protein_coding synonymous_variant LOW 537T>C Pro179Pro
M0210070 GOKCFICI_00006 8477 3 Gut 0.17 protein_coding missense_variant MODERATE 539C>G Ala180Gly
M0210071 GOKCFICI_00010 15147 3 Gut 0.17 protein_coding missense_variant MODERATE 2830G>A Ala944Thr
M0210072 GOKCFICI_00010 15148 3 Gut 0.17 protein_coding missense_variant MODERATE 2831C>T Ala944Val
M0210073 GOKCFICI_00010 15152 3 Gut 0.17 protein_coding synonymous_variant LOW 2835G>C Ala945Ala
M0210074 GOKCFICI_00010 15274 3 Gut 0.17 protein_coding missense_variant MODERATE 2957C>A Ala986Glu
M0210075 GOKCFICI_00010 15275 3 Gut 0.17 protein_coding synonymous_variant LOW 2958A>C Ala986Ala
M0210076 GOKCFICI_00010 15321 3 Gut 0.17 protein_coding missense_variant MODERATE 3004A>G Ile1002Val
M0210077 GOKCFICI_00010 15378 3 Gut 0.17 protein_coding missense_variant MODERATE 3061T>C Ser1021Pro
M0210078 GOKCFICI_00010 15449 3 Gut 0.17 protein_coding synonymous_variant LOW 3132C>T Leu1044Leu
M0210079 GOKCFICI_00010 15529 3 Gut 0.17 protein_coding missense_variant MODERATE 3212A>C Lys1071Thr
M0210080 GOKCFICI_00010 15563 3 Gut 0.17 protein_coding synonymous_variant LOW 3246T>C Thr1082Thr
M0210081 GOKCFICI_00010 15566 3 Gut 0.17 protein_coding synonymous_variant LOW 3249T>C Gly1083Gly
M0210082 GOKCFICI_00010 15571 3 Gut 0.17 protein_coding missense_variant MODERATE 3254A>G His1085Arg
M0210083 GOKCFICI_00023 23435 3 Gut 0.17 protein_coding synonymous_variant LOW 189T>C Tyr63Tyr
M0210084 GOKCFICI_00023 23462 3 Gut 0.17 protein_coding synonymous_variant LOW 216A>G Arg72Arg
M0210085 GOKCFICI_00023 23583 3 Gut 0.17 protein_coding missense_variant MODERATE 337A>T Ser113Cys
M0210086 GOKCFICI_00024 24508 3 Gut 0.17 protein_coding synonymous_variant LOW 627A>C Gly209Gly
M0210087 GOKCFICI_00022 22950 3 Gut 0.17 protein_coding synonymous_variant LOW 93T>C Gly31Gly
M0210088 GOKCFICI_00018 22994 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2539A>G None
M0210089 GOKCFICI_00018 22999 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2544G>A None
M0210090 GOKCFICI_00018 23000 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2545A>G None
M0210091 GOKCFICI_00018 23002 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2547G>A None
M0210092 GOKCFICI_00018 23026 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2571T>A None
M0210093 GOKCFICI_00018 23028 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2573G>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term