Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1429
  Reference Plasmid   NZ_OY725752.1
  Reference Plasmid Size   117944
  Reference Plasmid GC Content   0.45
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0210288 GOPLACOO_00027 30178 3 Gut 1.00 protein_coding missense_variant MODERATE 369T>G Ser123Arg
M0210289 GOPLACOO_00027 30207 3 Gut 1.00 protein_coding missense_variant MODERATE 398A>G Glu133Gly
M0210290 GOPLACOO_00027 30236 3 Gut 1.00 protein_coding missense_variant MODERATE 427G>A Ala143Thr
M0210291 GOPLACOO_00027 30270 3 Gut 1.00 protein_coding splice_region_variant&stop_retained_variant LOW 461G>A Ter154Ter
M0210292 GOPLACOO_00028 30298 3 Gut 1.00 protein_coding missense_variant MODERATE 31T>G Leu11Val
M0210293 GOPLACOO_00028 30299 3 Gut 1.00 protein_coding missense_variant MODERATE 32T>C Leu11Ser
M0210294 GOPLACOO_00028 30300 3 Gut 1.00 protein_coding missense_variant MODERATE 33A>T Leu11Phe
M0210295 GOPLACOO_00028 30312 3 Gut 1.00 protein_coding synonymous_variant LOW 45T>C Pro15Pro
M0210296 GOPLACOO_00028 30363 3 Gut 1.00 protein_coding synonymous_variant LOW 96C>T Ser32Ser
M0210297 GOPLACOO_00028 30364 3 Gut 1.00 protein_coding missense_variant MODERATE 97C>T Leu33Phe
M0210298 GOPLACOO_00028 30471 3 Gut 1.00 protein_coding synonymous_variant LOW 204G>A Ala68Ala
M0210299 GOPLACOO_00028 30567 3 Gut 1.00 protein_coding synonymous_variant LOW 300G>A Thr100Thr
M0210300 GOPLACOO_00028 30595 3 Gut 1.00 protein_coding missense_variant MODERATE 328C>T Arg110Cys
M0210301 GOPLACOO_00028 30606 3 Gut 1.00 protein_coding synonymous_variant LOW 339T>C Phe113Phe
M0210302 GOPLACOO_00028 30612 3 Gut 1.00 protein_coding synonymous_variant LOW 345C>T Ile115Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
GOPLACOO_00019 QUT53071.1|CBM20|GH77 100 0 1 895 1 1
GOPLACOO_00030 QUT53082.1|GT2 100 8.71e-256 1 341 1 1
GOPLACOO_00034 QUT53086.1|GH20 100 0 1 571 1 1
GOPLACOO_00041 QUT94541.1|CE20 99.8 0 1 473 1 1
GOPLACOO_00044 QUT19839.1|GH130 100 1.01e-297 1 390 1 1
GOPLACOO_00045 QUT94545.1|GH26 100 2.42e-287 1 368 1 1
GOPLACOO_00073 QUT53125.1|GH36 100 0 1 732 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term