Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1431
  Reference Plasmid   NZ_OY725763.1
  Reference Plasmid Size   63131
  Reference Plasmid GC Content   0.44
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0210665 OCIIIGMH_00013 9577 4 Gut 0.22 protein_coding missense_variant MODERATE 239T>C Val80Ala
M0210666 OCIIIGMH_00013 9581 4 Gut 0.22 protein_coding missense_variant MODERATE 235A>G Thr79Ala
M0210667 OCIIIGMH_00005 9829 4 Gut 0.22 protein_coding upstream_gene_variant MODIFIER -4494T>C None
M0210668 OCIIIGMH_00005 9868 5 Gut 0.28 protein_coding upstream_gene_variant MODIFIER -4533T>C None
M0210669 OCIIIGMH_00005 9880 4 Gut 0.22 protein_coding upstream_gene_variant MODIFIER -4545C>A None
M0210670 OCIIIGMH_00005 9881 4 Gut 0.22 protein_coding upstream_gene_variant MODIFIER -4546C>T None
M0210671 OCIIIGMH_00005 9897 6 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -4562A>G None
M0210672 OCIIIGMH_00014 10181 4 Gut 0.22 protein_coding missense_variant MODERATE 35T>C Leu12Pro
M0210673 OCIIIGMH_00015 10287 4 Gut 0.22 protein_coding synonymous_variant LOW 699T>C Tyr233Tyr
M0210674 OCIIIGMH_00015 10349 4 Gut 0.22 protein_coding missense_variant MODERATE 637T>C Ser213Pro
M0210675 OCIIIGMH_00015 10389 4 Gut 0.22 protein_coding synonymous_variant LOW 597G>A Leu199Leu
M0210676 OCIIIGMH_00015 10772 5 Gut 0.28 protein_coding synonymous_variant LOW 214T>C Leu72Leu
M0210677 OCIIIGMH_00015 10779 5 Gut 0.28 protein_coding synonymous_variant LOW 207A>G Arg69Arg
M0210678 OCIIIGMH_00016 11014 5 Gut 0.28 protein_coding synonymous_variant LOW 852T>C Gly284Gly
M0210679 OCIIIGMH_00016 11056 5 Gut 0.28 protein_coding synonymous_variant LOW 810G>C Ala270Ala
M0210680 OCIIIGMH_00016 11619 5 Gut 0.28 protein_coding missense_variant MODERATE 247A>G Arg83Gly
M0210681 OCIIIGMH_00016 11623 5 Gut 0.28 protein_coding synonymous_variant LOW 243A>G Val81Val
M0210682 OCIIIGMH_00016 11676 5 Gut 0.28 protein_coding missense_variant MODERATE 190A>G Met64Val
M0210683 OCIIIGMH_00016 11734 5 Gut 0.28 protein_coding synonymous_variant LOW 132T>C Asp44Asp
M0210684 OCIIIGMH_00016 11824 5 Gut 0.28 protein_coding synonymous_variant LOW 42A>G Leu14Leu
M0210685 OCIIIGMH_00009 11872 5 Gut 0.28 protein_coding upstream_gene_variant MODIFIER -4388T>C None
M0210686 OCIIIGMH_00009 11888 6 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -4404A>G None
M0210687 OCIIIGMH_00009 11891 5 Gut 0.28 protein_coding upstream_gene_variant MODIFIER -4407T>C None
M0210688 OCIIIGMH_00009 11894 5 Gut 0.28 protein_coding upstream_gene_variant MODIFIER -4410C>A None
M0210689 OCIIIGMH_00009 12084 5 Gut 0.28 protein_coding upstream_gene_variant MODIFIER -4600T>C None
M0210690 OCIIIGMH_00017 12207 5 Gut 0.28 protein_coding missense_variant MODERATE 94T>C Ser32Pro
M0210691 OCIIIGMH_00018 12426 5 Gut 0.28 protein_coding synonymous_variant LOW 375T>C Ile125Ile
M0210692 OCIIIGMH_00018 12764 5 Gut 0.28 protein_coding missense_variant MODERATE 37T>C Phe13Leu
M0210693 OCIIIGMH_00019 12942 5 Gut 0.28 protein_coding missense_variant MODERATE 1042A>G Thr348Ala
M0210694 OCIIIGMH_00019 12984 5 Gut 0.28 protein_coding missense_variant MODERATE 1000A>G Lys334Glu
M0210695 OCIIIGMH_00019 13065 5 Gut 0.28 protein_coding missense_variant MODERATE 919T>C Tyr307His
M0210696 OCIIIGMH_00019 13114 5 Gut 0.28 protein_coding synonymous_variant LOW 870C>A Thr290Thr
M0210697 OCIIIGMH_00019 13191 5 Gut 0.28 protein_coding missense_variant MODERATE 793C>T Pro265Ser
M0210698 OCIIIGMH_00019 13271 5 Gut 0.28 protein_coding missense_variant MODERATE 713T>C Val238Ala
M0210699 OCIIIGMH_00019 13446 5 Gut 0.28 protein_coding missense_variant MODERATE 538A>G Ser180Gly
M0210700 OCIIIGMH_00019 13510 5 Gut 0.28 protein_coding synonymous_variant LOW 474T>C Ala158Ala
M0210701 OCIIIGMH_00019 13539 5 Gut 0.28 protein_coding missense_variant MODERATE 445C>G Gln149Glu
M0210702 OCIIIGMH_00019 13686 6 Gut 0.33 protein_coding missense_variant MODERATE 298A>G Ile100Val
M0210703 OCIIIGMH_00020 14073 6 Gut 0.33 protein_coding missense_variant MODERATE 2084A>T Gln695Leu
M0210704 OCIIIGMH_00020 14149 6 Gut 0.33 protein_coding missense_variant MODERATE 2008T>C Cys670Arg
M0210705 OCIIIGMH_00020 14238 6 Gut 0.33 protein_coding missense_variant MODERATE 1919A>G Asn640Ser
M0210706 OCIIIGMH_00020 14246 6 Gut 0.33 protein_coding synonymous_variant LOW 1911A>G Thr637Thr
M0210707 OCIIIGMH_00020 14257 4 Gut 0.22 protein_coding missense_variant MODERATE 1900G>A Ala634Thr
M0210708 OCIIIGMH_00020 14417 6 Gut 0.33 protein_coding synonymous_variant LOW 1740T>C Arg580Arg
M0210709 OCIIIGMH_00020 14441 6 Gut 0.33 protein_coding missense_variant MODERATE 1716C>A Asp572Glu
M0210710 OCIIIGMH_00020 14753 6 Gut 0.33 protein_coding synonymous_variant LOW 1404T>C Ala468Ala
M0210711 OCIIIGMH_00020 14899 6 Gut 0.33 protein_coding missense_variant MODERATE 1258A>G Asn420Asp
M0210712 OCIIIGMH_00020 14912 6 Gut 0.33 protein_coding synonymous_variant LOW 1245T>C Ala415Ala
M0210713 OCIIIGMH_00020 14924 6 Gut 0.33 protein_coding synonymous_variant LOW 1233A>G Leu411Leu
M0210714 OCIIIGMH_00020 14956 6 Gut 0.33 protein_coding missense_variant MODERATE 1201A>G Thr401Ala
M0210715 OCIIIGMH_00020 14969 6 Gut 0.33 protein_coding synonymous_variant LOW 1188G>T Ser396Ser
M0210716 OCIIIGMH_00020 15010 6 Gut 0.33 protein_coding missense_variant MODERATE 1147A>G Ser383Gly
M0210717 OCIIIGMH_00020 15298 6 Gut 0.33 protein_coding missense_variant MODERATE 859T>C Cys287Arg
M0210718 OCIIIGMH_00020 15314 6 Gut 0.33 protein_coding synonymous_variant LOW 843C>T Asp281Asp
M0210719 OCIIIGMH_00020 15350 6 Gut 0.33 protein_coding synonymous_variant LOW 807T>C Asn269Asn
M0210720 OCIIIGMH_00020 15372 6 Gut 0.33 protein_coding missense_variant MODERATE 785T>C Val262Ala
M0210721 OCIIIGMH_00020 15577 6 Gut 0.33 protein_coding missense_variant MODERATE 580T>C Trp194Arg
M0210722 OCIIIGMH_00020 15611 6 Gut 0.33 protein_coding synonymous_variant LOW 546A>G Leu182Leu
M0210723 OCIIIGMH_00020 15629 6 Gut 0.33 protein_coding synonymous_variant LOW 528T>C Arg176Arg
M0210724 OCIIIGMH_00020 15646 6 Gut 0.33 protein_coding missense_variant MODERATE 511A>G Thr171Ala
M0210725 OCIIIGMH_00020 15676 6 Gut 0.33 protein_coding missense_variant MODERATE 481A>C Ile161Leu
M0210726 OCIIIGMH_00020 15757 6 Gut 0.33 protein_coding missense_variant MODERATE 400T>C Cys134Arg
M0210727 OCIIIGMH_00021 16297 6 Gut 0.33 protein_coding missense_variant MODERATE 301T>C Cys101Arg
M0210728 OCIIIGMH_00021 16405 6 Gut 0.33 protein_coding missense_variant MODERATE 193G>A Ala65Thr
M0210729 OCIIIGMH_00021 16475 6 Gut 0.33 protein_coding synonymous_variant LOW 123T>C Ser41Ser
M0210730 OCIIIGMH_00021 16488 6 Gut 0.33 protein_coding missense_variant MODERATE 110T>C Val37Ala
M0210731 OCIIIGMH_00016 16644 6 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -4779T>C None
M0210732 OCIIIGMH_00016 16668 6 Gut 0.33 protein_coding upstream_gene_variant MODIFIER -4803T>G None
M0210733 OCIIIGMH_00022 16891 6 Gut 0.33 protein_coding missense_variant MODERATE 112G>A Glu38Lys
M0210734 OCIIIGMH_00022 16895 6 Gut 0.33 protein_coding missense_variant MODERATE 116T>C Val39Ala
M0210735 OCIIIGMH_00018 12414 4 Gut 0.22 protein_coding synonymous_variant LOW 387C>T Ile129Ile
M0210736 OCIIIGMH_00019 12889 3 Gut 0.17 protein_coding synonymous_variant LOW 1095C>T Leu365Leu
M0210737 OCIIIGMH_00019 13687 5 Gut 0.28 protein_coding synonymous_variant LOW 297C>T Arg99Arg
M0210738 OCIIIGMH_00020 14182 3 Gut 0.17 protein_coding synonymous_variant LOW 1975C>T Leu659Leu
M0210739 OCIIIGMH_00020 14209 5 Gut 0.28 protein_coding missense_variant MODERATE 1948T>G Ser650Ala
M0210740 OCIIIGMH_00020 14237 5 Gut 0.28 protein_coding synonymous_variant LOW 1920C>T Asn640Asn
M0210741 OCIIIGMH_00020 14767 5 Gut 0.28 protein_coding missense_variant MODERATE 1390G>A Val464Ile
M0210742 OCIIIGMH_00020 15110 5 Gut 0.28 protein_coding synonymous_variant LOW 1047C>T Ile349Ile
M0210743 OCIIIGMH_00020 15258 5 Gut 0.28 protein_coding missense_variant MODERATE 899A>T Lys300Met
M0210744 OCIIIGMH_00020 15531 5 Gut 0.28 protein_coding missense_variant MODERATE 626A>G Tyr209Cys
M0210745 OCIIIGMH_00020 16022 5 Gut 0.28 protein_coding synonymous_variant LOW 135C>T Ser45Ser
M0210746 OCIIIGMH_00016 16209 5 Gut 0.28 protein_coding upstream_gene_variant MODIFIER -4344C>T None
M0210747 OCIIIGMH_00016 16669 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4804T>C None
M0210748 OCIIIGMH_00022 16890 5 Gut 0.28 protein_coding synonymous_variant LOW 111C>A Ile37Ile
M0210749 OCIIIGMH_00014 10074 3 Gut 0.17 protein_coding missense_variant MODERATE 142G>A Ala48Thr
M0210750 OCIIIGMH_00005 10235 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4900C>T None
M0210751 OCIIIGMH_00015 10399 3 Gut 0.17 protein_coding missense_variant MODERATE 587G>T Trp196Leu
M0210752 OCIIIGMH_00054 53863 3 Gut 0.17 protein_coding synonymous_variant LOW 618A>G Gly206Gly
M0210753 OCIIIGMH_00054 53959 3 Gut 0.17 protein_coding synonymous_variant LOW 522T>C Arg174Arg
M0210754 OCIIIGMH_00054 54246 3 Gut 0.17 protein_coding missense_variant MODERATE 235A>G Lys79Glu
M0210755 OCIIIGMH_00054 54291 3 Gut 0.17 protein_coding missense_variant MODERATE 190A>G Lys64Glu
M0210756 OCIIIGMH_00055 54601 3 Gut 0.17 protein_coding synonymous_variant LOW 2097A>G Arg699Arg
M0210757 OCIIIGMH_00055 54974 3 Gut 0.17 protein_coding missense_variant MODERATE 1724A>G Gln575Arg
M0210758 OCIIIGMH_00055 55182 3 Gut 0.17 protein_coding missense_variant MODERATE 1516A>G Ile506Val
M0210759 OCIIIGMH_00055 55226 3 Gut 0.17 protein_coding missense_variant MODERATE 1472A>T Gln491Leu
M0210760 OCIIIGMH_00055 55242 3 Gut 0.17 protein_coding missense_variant MODERATE 1456A>G Asn486Asp
M0210761 OCIIIGMH_00055 55323 3 Gut 0.17 protein_coding missense_variant MODERATE 1375A>G Ser459Gly
M0210762 OCIIIGMH_00055 55996 3 Gut 0.17 protein_coding synonymous_variant LOW 702A>G Ala234Ala
M0210763 OCIIIGMH_00055 56056 3 Gut 0.17 protein_coding synonymous_variant LOW 642T>C Gly214Gly
M0210764 OCIIIGMH_00055 56563 3 Gut 0.17 protein_coding synonymous_variant LOW 135A>G Val45Val
M0210765 OCIIIGMH_00055 56651 3 Gut 0.17 protein_coding missense_variant MODERATE 47G>C Gly16Ala
M0210766 OCIIIGMH_00055 56659 3 Gut 0.17 protein_coding synonymous_variant LOW 39A>G Leu13Leu
M0210767 OCIIIGMH_00056 56826 3 Gut 0.17 protein_coding missense_variant MODERATE 109T>C Cys37Arg
M0210768 OCIIIGMH_00053 56967 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4812T>C None
M0210769 OCIIIGMH_00057 57297 3 Gut 0.17 protein_coding missense_variant MODERATE 2270T>C Val757Ala
M0210770 OCIIIGMH_00057 57484 3 Gut 0.17 protein_coding missense_variant MODERATE 2083A>G Thr695Ala
M0210771 OCIIIGMH_00057 57748 3 Gut 0.17 protein_coding missense_variant MODERATE 1819A>G Arg607Gly
M0210772 OCIIIGMH_00057 57755 3 Gut 0.17 protein_coding synonymous_variant LOW 1812T>C Pro604Pro
M0210773 OCIIIGMH_00057 59437 3 Gut 0.17 protein_coding missense_variant MODERATE 130T>C Cys44Arg
M0210774 OCIIIGMH_00055 59902 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -3205G>A None
M0210775 OCIIIGMH_00055 59932 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -3235A>G None
M0210776 OCIIIGMH_00058 59984 3 Gut 0.17 protein_coding synonymous_variant LOW 27T>A Ala9Ala
M0210777 OCIIIGMH_00055 60058 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -3361G>A None
M0210778 OCIIIGMH_00055 60061 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -3364A>G None
M0210779 OCIIIGMH_00055 60252 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -3555A>G None
M0210780 OCIIIGMH_00055 60253 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -3556G>A None
M0210781 OCIIIGMH_00055 60254 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -3557A>T None
M0210782 OCIIIGMH_00055 60304 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -3607G>A None
M0210783 OCIIIGMH_00055 61213 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4516A>G None
M0210784 OCIIIGMH_00055 61339 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4642T>C None
M0210785 OCIIIGMH_00055 61693 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4996G>A None
M0210786 OCIIIGMH_00057 62314 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2748T>C None
M0210787 OCIIIGMH_00057 62350 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2784A>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
OCIIIGMH_00054 QCY55670.1|GH20 100 0 1 770 1 1
OCIIIGMH_00055 QCY55671.1|GH163 100 0 1 732 1 1
OCIIIGMH_00057 QUT53542.1|GH3 100 0 1 859 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term