Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1452
  Reference Plasmid   NZ_PP589733.1
  Reference Plasmid Size   49925
  Reference Plasmid GC Content   0.37
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0211055 DIKKMGLK_00019 25143 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -159T>C None
M0211056 DIKKMGLK_00019 25260 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -42T>G None
M0211057 DIKKMGLK_00019 25267 3 Gut 1.00 protein_coding upstream_gene_variant MODIFIER -35A>C None
M0211058 DIKKMGLK_00019 25542 3 Gut 1.00 protein_coding missense_variant MODERATE 241A>G Lys81Glu
M0211059 DIKKMGLK_00020 25948 3 Gut 1.00 protein_coding synonymous_variant LOW 279A>G Val93Val
M0211060 DIKKMGLK_00020 25963 3 Gut 1.00 protein_coding synonymous_variant LOW 294G>A Leu98Leu
M0211061 DIKKMGLK_00020 26133 3 Gut 1.00 protein_coding missense_variant MODERATE 464C>T Ser155Leu
M0211062 DIKKMGLK_00020 26147 3 Gut 1.00 protein_coding synonymous_variant LOW 478C>T Leu160Leu
M0211063 DIKKMGLK_00021 26708 3 Gut 1.00 protein_coding synonymous_variant LOW 1563G>T Gly521Gly
M0211064 DIKKMGLK_00021 27009 3 Gut 1.00 protein_coding missense_variant MODERATE 1262C>A Ala421Glu
M0211065 DIKKMGLK_00021 27014 3 Gut 1.00 protein_coding missense_variant MODERATE 1257T>A Asn419Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
DIKKMGLK_00014 QRZ31157.1|CBM5|GH18 100 0 1 508 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term