Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1464
  Reference Plasmid   OY725846.1
  Reference Plasmid Size   386527
  Reference Plasmid GC Content   0.58
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0211290 AGHDEBDL_00021 23278 30 Gut 0.23 protein_coding missense_variant MODERATE 241A>G Ile81Val
M0211291 AGHDEBDL_00021 23309 34 Gut 0.26 protein_coding synonymous_variant LOW 210T>C Gly70Gly
M0211292 AGHDEBDL_00021 23429 31 Gut 0.23 protein_coding synonymous_variant LOW 90C>T Ala30Ala
M0211293 AGHDEBDL_00021 23444 41 Gut 0.31 protein_coding synonymous_variant LOW 75T>C Ile25Ile
M0211294 AGHDEBDL_00016 23565 29 Gut 0.22 protein_coding upstream_gene_variant MODIFIER -4887G>T None
M0211295 AGHDEBDL_00016 23594 31 Gut 0.23 protein_coding upstream_gene_variant MODIFIER -4916A>G None
M0211296 AGHDEBDL_00017 24089 65 Gut 0.49 protein_coding upstream_gene_variant MODIFIER -4035T>G None
M0211297 AGHDEBDL_00022 24182 65 Gut 0.49 protein_coding synonymous_variant LOW 1077C>T His359His
M0211298 AGHDEBDL_00022 24544 15 Gut 0.11 protein_coding missense_variant MODERATE 715A>G Ile239Val
M0211299 AGHDEBDL_00022 24577 22 Gut 0.17 protein_coding missense_variant MODERATE 682G>A Val228Met
M0211300 AGHDEBDL_00022 24683 28 Gut 0.21 protein_coding synonymous_variant LOW 576C>T Asp192Asp
M0211301 AGHDEBDL_00022 24872 69 Gut 0.52 protein_coding synonymous_variant LOW 387A>G Val129Val
M0211302 AGHDEBDL_00022 24917 26 Gut 0.20 protein_coding synonymous_variant LOW 342C>T Cys114Cys
M0211303 AGHDEBDL_00022 24965 51 Gut 0.39 protein_coding synonymous_variant LOW 294A>G Gly98Gly
M0211304 AGHDEBDL_00022 24968 24 Gut 0.18 protein_coding synonymous_variant LOW 291G>A Ala97Ala
M0211305 AGHDEBDL_00022 25208 15 Gut 0.11 protein_coding synonymous_variant LOW 51C>T Gly17Gly
M0211306 AGHDEBDL_00023 25333 22 Gut 0.17 protein_coding synonymous_variant LOW 1482A>G Glu494Glu
M0211307 AGHDEBDL_00023 25984 14 Gut 0.11 protein_coding synonymous_variant LOW 831C>T Gly277Gly
M0211308 AGHDEBDL_00023 26566 28 Gut 0.21 protein_coding synonymous_variant LOW 249T>C Arg83Arg
M0211309 AGHDEBDL_00024 26927 14 Gut 0.11 protein_coding missense_variant MODERATE 1321A>G Ile441Val
M0211310 AGHDEBDL_00024 27357 23 Gut 0.17 protein_coding synonymous_variant LOW 891T>C Tyr297Tyr
M0211311 AGHDEBDL_00024 27381 8 Gut 0.06 protein_coding synonymous_variant LOW 867C>T Ser289Ser
M0211312 AGHDEBDL_00024 27426 18 Gut 0.14 protein_coding synonymous_variant LOW 822C>A Gly274Gly
M0211313 AGHDEBDL_00024 27778 11 Gut 0.08 protein_coding missense_variant MODERATE 470C>T Ala157Val
M0211314 AGHDEBDL_00024 27879 9 Gut 0.07 protein_coding synonymous_variant LOW 369C>T Gly123Gly
M0211315 AGHDEBDL_00024 27896 8 Gut 0.06 protein_coding missense_variant MODERATE 352C>T Leu118Phe
M0211316 AGHDEBDL_00024 27987 42 Gut 0.32 protein_coding synonymous_variant LOW 261A>G Leu87Leu
M0211317 AGHDEBDL_00024 28143 12 Gut 0.09 protein_coding synonymous_variant LOW 105G>A Glu35Glu
M0211318 AGHDEBDL_00021 28359 16 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -4841G>A None
M0211319 AGHDEBDL_00025 28462 10 Gut 0.08 protein_coding missense_variant MODERATE 1489G>T Ala497Ser
M0211320 AGHDEBDL_00025 28525 39 Gut 0.30 protein_coding missense_variant MODERATE 1426T>C Phe476Leu
M0211321 AGHDEBDL_00025 28541 11 Gut 0.08 protein_coding synonymous_variant LOW 1410T>C Gly470Gly
M0211322 AGHDEBDL_00025 28649 18 Gut 0.14 protein_coding synonymous_variant LOW 1302G>C Gly434Gly
M0211323 AGHDEBDL_00025 29114 35 Gut 0.27 protein_coding synonymous_variant LOW 837T>C Cys279Cys
M0211324 AGHDEBDL_00025 29246 14 Gut 0.11 protein_coding synonymous_variant LOW 705G>A Glu235Glu
M0211325 AGHDEBDL_00025 29468 17 Gut 0.13 protein_coding synonymous_variant LOW 483C>T Arg161Arg
M0211326 AGHDEBDL_00025 29472 22 Gut 0.17 protein_coding missense_variant MODERATE 479T>C Val160Ala
M0211327 AGHDEBDL_00025 29641 35 Gut 0.27 protein_coding missense_variant MODERATE 310A>C Ser104Arg
M0211328 AGHDEBDL_00026 30433 7 Gut 0.05 protein_coding missense_variant MODERATE 361G>A Ala121Thr
M0211329 AGHDEBDL_00026 30581 27 Gut 0.20 protein_coding synonymous_variant LOW 213T>C Arg71Arg
M0211330 AGHDEBDL_00023 30960 29 Gut 0.22 protein_coding upstream_gene_variant MODIFIER -4146A>G None
M0211331 AGHDEBDL_00023 30962 29 Gut 0.22 protein_coding upstream_gene_variant MODIFIER -4148T>C None
M0211332 AGHDEBDL_00027 31532 29 Gut 0.22 protein_coding missense_variant MODERATE 638A>G His213Arg
M0211333 AGHDEBDL_00027 31699 5 Gut 0.04 protein_coding synonymous_variant LOW 471C>A Val157Val
M0211334 AGHDEBDL_00027 31843 6 Gut 0.05 protein_coding synonymous_variant LOW 327G>A Gln109Gln
M0211335 AGHDEBDL_00027 32016 13 Gut 0.10 protein_coding missense_variant MODERATE 154C>T His52Tyr
M0211336 AGHDEBDL_00027 32082 7 Gut 0.05 protein_coding missense_variant MODERATE 88G>A Ala30Thr
M0211337 AGHDEBDL_00027 32140 25 Gut 0.19 protein_coding synonymous_variant LOW 30C>T Gly10Gly
M0211338 AGHDEBDL_00024 32252 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4005G>A None
M0211339 AGHDEBDL_00024 32293 16 Gut 0.12 protein_coding upstream_gene_variant MODIFIER -4046C>A None
M0211340 AGHDEBDL_00024 32294 15 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4047T>C None
M0211341 AGHDEBDL_00024 32303 22 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4056C>T None
M0211342 AGHDEBDL_00024 32362 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4115A>G None
M0211343 AGHDEBDL_00024 32475 20 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4228G>A None
M0211344 AGHDEBDL_00028 32592 18 Gut 0.14 protein_coding synonymous_variant LOW 48C>G Arg16Arg
M0211345 AGHDEBDL_00028 32605 18 Gut 0.14 protein_coding missense_variant MODERATE 61G>A Val21Ile
M0211346 AGHDEBDL_00013 21373 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4684C>A None
M0211347 AGHDEBDL_00019 21557 4 Gut 0.03 protein_coding synonymous_variant LOW 111C>T Asp37Asp
M0211348 AGHDEBDL_00019 21704 9 Gut 0.07 protein_coding synonymous_variant LOW 258G>T Gly86Gly
M0211349 AGHDEBDL_00020 22664 18 Gut 0.14 protein_coding missense_variant MODERATE 451A>G Thr151Ala
M0211350 AGHDEBDL_00020 22721 19 Gut 0.14 protein_coding synonymous_variant LOW 508T>C Leu170Leu
M0211351 AGHDEBDL_00020 22861 20 Gut 0.15 protein_coding synonymous_variant LOW 648A>G Thr216Thr
M0211352 AGHDEBDL_00020 22972 7 Gut 0.05 protein_coding missense_variant MODERATE 759C>A His253Gln
M0211353 AGHDEBDL_00017 23741 18 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -3687C>T None
M0211354 AGHDEBDL_00017 23743 7 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -3689G>A None
M0211355 AGHDEBDL_00017 23897 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -3843C>T None
M0211356 AGHDEBDL_00017 23964 36 Gut 0.27 protein_coding upstream_gene_variant MODIFIER -3910T>C None
M0211357 AGHDEBDL_00022 25061 52 Gut 0.39 protein_coding synonymous_variant LOW 198T>C Tyr66Tyr
M0211358 AGHDEBDL_00019 21890 13 Gut 0.10 protein_coding synonymous_variant LOW 444A>G Gln148Gln
M0211359 AGHDEBDL_00020 23068 4 Gut 0.03 protein_coding synonymous_variant LOW 855G>C Thr285Thr
M0211360 AGHDEBDL_00020 23086 5 Gut 0.04 protein_coding synonymous_variant LOW 873A>G Ala291Ala
M0211361 AGHDEBDL_00020 23176 5 Gut 0.04 protein_coding synonymous_variant LOW 963T>C Ala321Ala
M0211362 AGHDEBDL_00017 24013 34 Gut 0.26 protein_coding upstream_gene_variant MODIFIER -3959A>G None
M0211363 AGHDEBDL_00017 24019 34 Gut 0.26 protein_coding upstream_gene_variant MODIFIER -3965G>A None
M0211364 AGHDEBDL_00017 24120 15 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4066G>A None
M0211365 AGHDEBDL_00023 25375 24 Gut 0.18 protein_coding synonymous_variant LOW 1440T>C Cys480Cys
M0211366 AGHDEBDL_00023 25435 4 Gut 0.03 protein_coding synonymous_variant LOW 1380T>C Cys460Cys
M0211367 AGHDEBDL_00023 26317 15 Gut 0.11 protein_coding synonymous_variant LOW 498G>A Gln166Gln
M0211368 AGHDEBDL_00024 26949 3 Gut 0.02 protein_coding synonymous_variant LOW 1299G>A Glu433Glu
M0211369 AGHDEBDL_00024 27066 8 Gut 0.06 protein_coding synonymous_variant LOW 1182C>A Arg394Arg
M0211370 AGHDEBDL_00024 27612 19 Gut 0.14 protein_coding synonymous_variant LOW 636T>C Arg212Arg
M0211371 AGHDEBDL_00024 27711 18 Gut 0.14 protein_coding synonymous_variant LOW 537A>C Gly179Gly
M0211372 AGHDEBDL_00023 30961 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4147C>T None
M0211373 AGHDEBDL_00018 20771 3 Gut 0.02 protein_coding synonymous_variant LOW 492A>G Glu164Glu
M0211374 AGHDEBDL_00018 20933 4 Gut 0.03 protein_coding synonymous_variant LOW 654T>C Ser218Ser
M0211375 AGHDEBDL_00018 20941 4 Gut 0.03 protein_coding missense_variant MODERATE 662A>G Asp221Gly
M0211376 AGHDEBDL_00019 22016 8 Gut 0.06 protein_coding synonymous_variant LOW 570T>C Pro190Pro
M0211377 AGHDEBDL_00020 22409 7 Gut 0.05 protein_coding missense_variant MODERATE 196G>A Glu66Lys
M0211378 AGHDEBDL_00021 23362 8 Gut 0.06 protein_coding missense_variant MODERATE 157G>A Ala53Thr
M0211379 AGHDEBDL_00021 23365 8 Gut 0.06 protein_coding missense_variant MODERATE 154C>T Arg52Cys
M0211380 AGHDEBDL_00021 23427 6 Gut 0.05 protein_coding missense_variant MODERATE 92G>A Gly31Asp
M0211381 AGHDEBDL_00017 23751 12 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -3697A>G None
M0211382 AGHDEBDL_00017 24084 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4030G>A None
M0211383 AGHDEBDL_00024 27099 3 Gut 0.02 protein_coding missense_variant MODERATE 1149G>A Met383Ile
M0211384 AGHDEBDL_00024 27510 14 Gut 0.11 protein_coding synonymous_variant LOW 738G>A Glu246Glu
M0211385 AGHDEBDL_00025 28839 8 Gut 0.06 protein_coding missense_variant MODERATE 1112T>C Val371Ala
M0211386 AGHDEBDL_00027 31171 10 Gut 0.08 protein_coding synonymous_variant LOW 999T>C Asp333Asp
M0211387 AGHDEBDL_00027 31431 19 Gut 0.14 protein_coding missense_variant MODERATE 739G>T Ala247Ser
M0211388 AGHDEBDL_00024 32272 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4025A>G None
M0211389 AGHDEBDL_00024 32273 19 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -4026G>A None
M0211390 AGHDEBDL_00024 32278 10 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4031G>A None
M0211391 AGHDEBDL_00024 32287 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4040A>G None
M0211392 AGHDEBDL_00018 21230 3 Gut 0.02 protein_coding synonymous_variant LOW 951C>T Asp317Asp
M0211393 AGHDEBDL_00019 21527 3 Gut 0.02 protein_coding missense_variant MODERATE 81T>G Ile27Met
M0211394 AGHDEBDL_00019 21593 3 Gut 0.02 protein_coding synonymous_variant LOW 147C>T Thr49Thr
M0211395 AGHDEBDL_00019 21908 6 Gut 0.05 protein_coding synonymous_variant LOW 462C>T Gly154Gly
M0211396 AGHDEBDL_00017 23959 11 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3905T>C None
M0211397 AGHDEBDL_00017 24018 10 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3964C>T None
M0211398 AGHDEBDL_00024 27600 7 Gut 0.05 protein_coding synonymous_variant LOW 648G>A Gly216Gly
M0211399 AGHDEBDL_00021 28341 7 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4823G>A None
M0211400 AGHDEBDL_00021 28352 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4834G>A None
M0211401 AGHDEBDL_00021 28401 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4883C>T None
M0211402 AGHDEBDL_00021 28413 6 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4895C>T None
M0211403 AGHDEBDL_00025 28658 5 Gut 0.04 protein_coding synonymous_variant LOW 1293T>C Asp431Asp
M0211404 AGHDEBDL_00067 75063 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -259A>G None
M0211405 AGHDEBDL_00067 75086 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -282C>T None
M0211406 AGHDEBDL_00067 75168 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -364G>C None
M0211407 AGHDEBDL_00067 75247 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -443C>T None
M0211408 AGHDEBDL_00067 75614 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -810A>G None
M0211409 AGHDEBDL_00067 75630 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -826A>C None
M0211410 AGHDEBDL_00067 75631 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -827G>A None
M0211411 AGHDEBDL_00067 75638 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -834C>T None
M0211412 AGHDEBDL_00067 75643 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -839T>A None
M0211413 AGHDEBDL_00067 75646 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -842T>A None
M0211414 AGHDEBDL_00067 75692 6 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -888G>A None
M0211415 AGHDEBDL_00067 75700 6 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -896A>G None
M0211416 AGHDEBDL_00067 75703 6 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -899A>T None
M0211417 AGHDEBDL_00067 75748 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -944G>A None
M0211418 AGHDEBDL_00067 76438 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -1634A>G None
M0211419 AGHDEBDL_00067 76559 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -1755C>T None
M0211420 AGHDEBDL_00067 76582 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -1778C>T None
M0211421 AGHDEBDL_00068 76623 6 Gut 0.05 protein_coding missense_variant MODERATE 10A>G Thr4Ala
M0211422 AGHDEBDL_00068 76734 6 Gut 0.05 protein_coding missense_variant MODERATE 121A>G Lys41Glu
M0211423 AGHDEBDL_00068 76787 6 Gut 0.05 protein_coding synonymous_variant LOW 174T>C Leu58Leu
M0211424 AGHDEBDL_00068 77184 6 Gut 0.05 protein_coding missense_variant MODERATE 571T>G Cys191Gly
M0211425 AGHDEBDL_00068 77310 6 Gut 0.05 protein_coding missense_variant MODERATE 697T>C Trp233Arg
M0211426 AGHDEBDL_00068 77363 6 Gut 0.05 protein_coding synonymous_variant LOW 750T>C Tyr250Tyr
M0211427 AGHDEBDL_00068 77540 5 Gut 0.04 protein_coding synonymous_variant LOW 927A>C Ala309Ala
M0211428 AGHDEBDL_00295 331352 14 Gut 0.11 protein_coding synonymous_variant LOW 855A>G Leu285Leu
M0211429 AGHDEBDL_00295 332207 24 Gut 0.18 protein_coding upstream_gene_variant MODIFIER -1T>C None
M0211430 AGHDEBDL_00295 332223 25 Gut 0.19 protein_coding upstream_gene_variant MODIFIER -17C>T None
M0211431 AGHDEBDL_00296 332337 29 Gut 0.22 protein_coding synonymous_variant LOW 27A>G Arg9Arg
M0211432 AGHDEBDL_00296 332565 16 Gut 0.12 protein_coding synonymous_variant LOW 255A>G Ala85Ala
M0211433 AGHDEBDL_00297 333164 3 Gut 0.02 protein_coding synonymous_variant LOW 267T>C Ile89Ile
M0211434 AGHDEBDL_00020 22854 3 Gut 0.02 protein_coding missense_variant MODERATE 641C>T Pro214Leu
M0211435 AGHDEBDL_00022 24470 5 Gut 0.04 protein_coding synonymous_variant LOW 789C>T Pro263Pro
M0211436 AGHDEBDL_00022 24582 6 Gut 0.05 protein_coding missense_variant MODERATE 677A>G Asn226Ser
M0211437 AGHDEBDL_00024 26886 5 Gut 0.04 protein_coding synonymous_variant LOW 1362G>T Leu454Leu
M0211438 AGHDEBDL_00024 32441 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4194T>C None
M0211439 AGHDEBDL_00022 24383 3 Gut 0.02 protein_coding synonymous_variant LOW 876T>C Tyr292Tyr
M0211440 AGHDEBDL_00022 24416 3 Gut 0.02 protein_coding synonymous_variant LOW 843G>C Arg281Arg
M0211441 AGHDEBDL_00022 24905 3 Gut 0.02 protein_coding synonymous_variant LOW 354G>A Glu118Glu
M0211442 AGHDEBDL_00022 25079 3 Gut 0.02 protein_coding synonymous_variant LOW 180G>A Lys60Lys
M0211443 AGHDEBDL_00023 26434 3 Gut 0.02 protein_coding synonymous_variant LOW 381C>T Tyr127Tyr
M0211444 AGHDEBDL_00023 30828 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4014A>C None
M0211445 AGHDEBDL_00023 30829 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4015C>T None
M0211446 AGHDEBDL_00023 30830 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -4016C>T None
M0211447 AGHDEBDL_00023 30840 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4026C>T None
M0211448 AGHDEBDL_00025 28629 4 Gut 0.03 protein_coding missense_variant MODERATE 1322C>T Ala441Val
M0211449 AGHDEBDL_00026 30436 7 Gut 0.05 protein_coding missense_variant MODERATE 358A>G Thr120Ala
M0211450 AGHDEBDL_00029 33765 5 Gut 0.04 protein_coding synonymous_variant LOW 330T>C Asp110Asp
M0211451 AGHDEBDL_00029 34098 9 Gut 0.07 protein_coding synonymous_variant LOW 663T>C His221His
M0211452 AGHDEBDL_00025 34770 8 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4820T>C None
M0211453 AGHDEBDL_00030 35297 4 Gut 0.03 protein_coding missense_variant MODERATE 482C>T Ala161Val
M0211454 AGHDEBDL_00017 23998 7 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -3944G>T None
M0211455 AGHDEBDL_00025 29009 3 Gut 0.02 protein_coding synonymous_variant LOW 942G>T Ala314Ala
M0211456 AGHDEBDL_00025 29906 8 Gut 0.06 protein_coding synonymous_variant LOW 45T>C Cys15Cys
M0211457 AGHDEBDL_00025 29914 6 Gut 0.05 protein_coding missense_variant MODERATE 37A>G Ser13Gly
M0211458 AGHDEBDL_00025 29916 6 Gut 0.05 protein_coding missense_variant MODERATE 35T>C Val12Ala
M0211459 AGHDEBDL_00026 30095 5 Gut 0.04 protein_coding synonymous_variant LOW 699T>C Asn233Asn
M0211460 AGHDEBDL_00027 31823 4 Gut 0.03 protein_coding missense_variant MODERATE 347G>A Gly116Asp
M0211461 AGHDEBDL_00027 32131 8 Gut 0.06 protein_coding synonymous_variant LOW 39G>A Ser13Ser
M0211462 AGHDEBDL_00024 32344 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4097C>T None
M0211463 AGHDEBDL_00295 331523 4 Gut 0.03 protein_coding synonymous_variant LOW 684T>C Asn228Asn
M0211464 AGHDEBDL_00297 333105 10 Gut 0.08 protein_coding synonymous_variant LOW 208T>C Leu70Leu
M0211465 AGHDEBDL_00297 333155 14 Gut 0.11 protein_coding synonymous_variant LOW 258T>C Pro86Pro
M0211466 AGHDEBDL_00297 333428 27 Gut 0.20 protein_coding synonymous_variant LOW 531T>C Gly177Gly
M0211467 AGHDEBDL_00016 23654 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -4976C>T None
M0211468 AGHDEBDL_00020 22471 4 Gut 0.03 protein_coding synonymous_variant LOW 258C>T Thr86Thr
M0211469 AGHDEBDL_00020 22711 4 Gut 0.03 protein_coding synonymous_variant LOW 498G>A Ala166Ala
M0211470 AGHDEBDL_00297 333162 3 Gut 0.02 protein_coding missense_variant MODERATE 265A>G Ile89Val
M0211471 AGHDEBDL_00017 23784 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -3730C>T None
M0211472 AGHDEBDL_00022 24371 5 Gut 0.04 protein_coding synonymous_variant LOW 888T>C Val296Val
M0211473 AGHDEBDL_00294 330534 4 Gut 0.03 protein_coding synonymous_variant LOW 243T>C Ala81Ala
M0211474 AGHDEBDL_00294 330864 4 Gut 0.03 protein_coding synonymous_variant LOW 573T>C Asp191Asp
M0211475 AGHDEBDL_00294 330940 7 Gut 0.05 protein_coding missense_variant MODERATE 649A>G Lys217Glu
M0211476 AGHDEBDL_00296 331252 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -1059T>C None
M0211477 AGHDEBDL_00295 331715 6 Gut 0.05 protein_coding synonymous_variant LOW 492G>A Leu164Leu
M0211478 AGHDEBDL_00297 333395 5 Gut 0.04 protein_coding synonymous_variant LOW 498G>A Lys166Lys
M0211479 AGHDEBDL_00017 23796 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -3742T>C None
M0211480 AGHDEBDL_00022 24557 6 Gut 0.05 protein_coding synonymous_variant LOW 702C>T Thr234Thr
M0211481 AGHDEBDL_00029 33877 7 Gut 0.05 protein_coding synonymous_variant LOW 442T>C Leu148Leu
M0211482 AGHDEBDL_00021 23286 5 Gut 0.04 protein_coding missense_variant MODERATE 233G>A Arg78His
M0211483 AGHDEBDL_00022 24903 4 Gut 0.03 protein_coding missense_variant MODERATE 356C>G Ala119Gly
M0211484 AGHDEBDL_00292 329394 3 Gut 0.02 protein_coding synonymous_variant LOW 165T>C Thr55Thr
M0211485 AGHDEBDL_00294 330444 4 Gut 0.03 protein_coding synonymous_variant LOW 153A>G Gly51Gly
M0211486 AGHDEBDL_00294 330450 4 Gut 0.03 protein_coding synonymous_variant LOW 159T>G Pro53Pro
M0211487 AGHDEBDL_00294 330684 5 Gut 0.04 protein_coding synonymous_variant LOW 393T>C Gly131Gly
M0211488 AGHDEBDL_00295 331739 4 Gut 0.03 protein_coding synonymous_variant LOW 468G>A Ala156Ala
M0211489 AGHDEBDL_00295 332048 3 Gut 0.02 protein_coding synonymous_variant LOW 159C>T Gly53Gly
M0211490 AGHDEBDL_00296 332827 10 Gut 0.08 protein_coding synonymous_variant LOW 517C>T Leu173Leu
M0211491 AGHDEBDL_00295 333577 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -1371C>T None
M0211492 AGHDEBDL_00295 333594 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -1388T>G None
M0211493 AGHDEBDL_00295 333611 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -1405T>C None
M0211494 AGHDEBDL_00295 333617 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -1411G>T None
M0211495 AGHDEBDL_00295 333619 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -1413G>C None
M0211496 AGHDEBDL_00025 29675 3 Gut 0.02 protein_coding synonymous_variant LOW 276G>A Thr92Thr
M0211497 AGHDEBDL_00023 30902 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4088C>T None
M0211498 AGHDEBDL_00298 334267 7 Gut 0.05 protein_coding missense_variant MODERATE 385A>G Thr129Ala
M0211499 AGHDEBDL_00298 334616 4 Gut 0.03 protein_coding synonymous_variant LOW 36C>T Val12Val
M0211500 AGHDEBDL_00299 335133 4 Gut 0.03 protein_coding synonymous_variant LOW 282T>C Ser94Ser
M0211501 AGHDEBDL_00067 75594 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -790C>T None
M0211502 AGHDEBDL_00067 75788 4 Gut 0.03 protein_coding upstream_gene_variant MODIFIER -984C>T None
M0211503 AGHDEBDL_00068 76883 5 Gut 0.04 protein_coding synonymous_variant LOW 270T>C Ser90Ser
M0211504 AGHDEBDL_00029 33486 3 Gut 0.02 protein_coding synonymous_variant LOW 51G>A Gly17Gly
M0211505 AGHDEBDL_00029 33612 4 Gut 0.03 protein_coding synonymous_variant LOW 177C>T Asp59Asp
M0211506 AGHDEBDL_00030 35202 6 Gut 0.05 protein_coding synonymous_variant LOW 387T>C Ala129Ala
M0211507 AGHDEBDL_00030 35229 4 Gut 0.03 protein_coding synonymous_variant LOW 414T>C Ile138Ile
M0211508 AGHDEBDL_00030 35340 7 Gut 0.05 protein_coding synonymous_variant LOW 525C>T Ser175Ser
M0211509 AGHDEBDL_00030 35681 7 Gut 0.05 protein_coding missense_variant MODERATE 866T>C Val289Ala
M0211510 AGHDEBDL_00031 35973 5 Gut 0.04 protein_coding synonymous_variant LOW 231G>A Ala77Ala
M0211511 AGHDEBDL_00031 36033 7 Gut 0.05 protein_coding synonymous_variant LOW 291C>G Pro97Pro
M0211512 AGHDEBDL_00031 36081 6 Gut 0.05 protein_coding synonymous_variant LOW 339C>A Arg113Arg
M0211513 AGHDEBDL_00031 36089 6 Gut 0.05 protein_coding missense_variant MODERATE 347C>T Ala116Val
M0211514 AGHDEBDL_00023 25816 3 Gut 0.02 protein_coding synonymous_variant LOW 999G>A Glu333Glu
M0211515 AGHDEBDL_00029 33543 4 Gut 0.03 protein_coding synonymous_variant LOW 108C>T Ala36Ala
M0211516 AGHDEBDL_00029 33837 3 Gut 0.02 protein_coding synonymous_variant LOW 402T>C Arg134Arg
M0211517 AGHDEBDL_00031 36093 5 Gut 0.04 protein_coding synonymous_variant LOW 351T>A Arg117Arg
M0211518 AGHDEBDL_00031 36238 3 Gut 0.02 protein_coding synonymous_variant LOW 496C>T Leu166Leu
M0211519 AGHDEBDL_00031 36267 5 Gut 0.04 protein_coding synonymous_variant LOW 525T>C Asp175Asp
M0211520 AGHDEBDL_00031 36532 5 Gut 0.04 protein_coding missense_variant MODERATE 790A>G Thr264Ala
M0211521 AGHDEBDL_00027 36668 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4499G>T None
M0211522 AGHDEBDL_00027 36686 5 Gut 0.04 protein_coding upstream_gene_variant MODIFIER -4517C>T None
M0211523 AGHDEBDL_00032 36803 5 Gut 0.04 protein_coding synonymous_variant LOW 90T>C Ala30Ala
M0211524 AGHDEBDL_00024 27177 4 Gut 0.03 protein_coding synonymous_variant LOW 1071C>T Asp357Asp
M0211525 AGHDEBDL_00025 28982 3 Gut 0.02 protein_coding synonymous_variant LOW 969C>T Cys323Cys
M0211526 AGHDEBDL_00032 37175 4 Gut 0.03 protein_coding synonymous_variant LOW 462G>A Thr154Thr
M0211527 AGHDEBDL_00032 37913 4 Gut 0.03 protein_coding synonymous_variant LOW 1200A>G Ala400Ala
M0211528 AGHDEBDL_00032 38159 4 Gut 0.03 protein_coding synonymous_variant LOW 1446T>C Asp482Asp
M0211529 AGHDEBDL_00032 38402 3 Gut 0.02 protein_coding synonymous_variant LOW 1689T>G Leu563Leu
M0211530 AGHDEBDL_00033 38726 3 Gut 0.02 protein_coding missense_variant MODERATE 158A>G Lys53Arg
M0211531 AGHDEBDL_00033 39120 3 Gut 0.02 protein_coding synonymous_variant LOW 552G>A Pro184Pro
M0211532 AGHDEBDL_00033 39726 3 Gut 0.02 protein_coding synonymous_variant LOW 1158T>C Arg386Arg
M0211533 AGHDEBDL_00034 40241 3 Gut 0.02 protein_coding synonymous_variant LOW 204A>C Ile68Ile
M0211534 AGHDEBDL_00295 331574 3 Gut 0.02 protein_coding synonymous_variant LOW 633T>C Gly211Gly
M0211535 AGHDEBDL_00067 75498 3 Gut 0.02 protein_coding upstream_gene_variant MODIFIER -694G>T None
M0211536 AGHDEBDL_00294 330930 3 Gut 0.02 protein_coding synonymous_variant LOW 639T>G Pro213Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
AGHDEBDL_00190 VFG001376 Capsule 75.1 1.4e-162 3 378 0.9921 0.9543 Immune modulation capsular polysaccharide biosynthesis protein Cps4L experiment
AGHDEBDL_00065 VFG005992 Capsule 77.7 1.1e-185 1 410 1.0 0.9951 Immune modulation nucleotide sugar dehydrogenase prediction
AGHDEBDL_00190 VFG001376 Capsule 75.1 1.1e-161 3 378 0.9921 0.9543 Immune modulation capsular polysaccharide biosynthesis protein Cps4L prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
AGHDEBDL_00063 UWP20358.1|GT0 96.5 1.12e-288 1 395 1 0.995
AGHDEBDL_00278 UWO85299.1|GH3 75.9 0 1 589 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
AGHDEBDL_00173 3.A.2.1.5 74.7 9.5e-200 4 464 0.9935 2.1000 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.2 The H+- or Na+-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily