Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1467
  Reference Plasmid   OY725857.1
  Reference Plasmid Size   334647
  Reference Plasmid GC Content   0.57
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0211640 KECBDLJG_00181 202648 8 Gut 0.29 protein_coding synonymous_variant LOW 447G>A Pro149Pro
M0211641 KECBDLJG_00181 202651 8 Gut 0.29 protein_coding synonymous_variant LOW 444C>T Pro148Pro
M0211642 KECBDLJG_00182 203127 14 Gut 0.50 protein_coding synonymous_variant LOW 729T>C Gly243Gly
M0211643 KECBDLJG_00182 203148 7 Gut 0.25 protein_coding synonymous_variant LOW 708G>A Thr236Thr
M0211644 KECBDLJG_00183 204045 12 Gut 0.43 protein_coding missense_variant MODERATE 1186T>C Tyr396His
M0211645 KECBDLJG_00183 204406 13 Gut 0.46 protein_coding synonymous_variant LOW 825A>G Ser275Ser
M0211646 KECBDLJG_00183 204541 10 Gut 0.36 protein_coding synonymous_variant LOW 690T>G Ala230Ala
M0211647 KECBDLJG_00183 204799 5 Gut 0.18 protein_coding missense_variant MODERATE 432C>G Ile144Met
M0211648 KECBDLJG_00183 205072 8 Gut 0.29 protein_coding synonymous_variant LOW 159T>C Phe53Phe
M0211649 KECBDLJG_00181 202638 3 Gut 0.11 protein_coding synonymous_variant LOW 457C>T Leu153Leu
M0211650 KECBDLJG_00181 202684 3 Gut 0.11 protein_coding synonymous_variant LOW 411A>C Gly137Gly
M0211651 KECBDLJG_00180 201488 5 Gut 0.18 protein_coding missense_variant MODERATE 470A>G Gln157Arg
M0211652 KECBDLJG_00181 203010 4 Gut 0.14 protein_coding missense_variant MODERATE 85G>A Val29Ile
M0211653 KECBDLJG_00183 204923 3 Gut 0.11 protein_coding missense_variant MODERATE 308G>A Arg103Lys
M0211654 KECBDLJG_00180 205306 3 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -3349T>G None
M0211655 KECBDLJG_00180 205334 4 Gut 0.14 protein_coding upstream_gene_variant MODIFIER -3377A>G None
M0211656 KECBDLJG_00180 205427 6 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3470T>C None
M0211657 KECBDLJG_00180 205441 6 Gut 0.21 protein_coding upstream_gene_variant MODIFIER -3484A>G None
M0211658 KECBDLJG_00184 205511 4 Gut 0.14 protein_coding synonymous_variant LOW 28C>T Leu10Leu
M0211659 KECBDLJG_00184 206023 3 Gut 0.11 protein_coding synonymous_variant LOW 540A>C Pro180Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
KECBDLJG_00038 BDF74358.1|GH112 86.2 0 1 722 1 1
KECBDLJG_00201 UQK36928.1|GT35 74.2 0 6 801 0.9925 0.9938
KECBDLJG_00269 UWP69240.1|GT2 72.3 1.44e-177 1 328 0.997 0.997





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term