Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1468
  Reference Plasmid   OY725868.1
  Reference Plasmid Size   304995
  Reference Plasmid GC Content   0.60
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0211660 NANMJFCI_00025 29171 7 Gut 0.15 protein_coding missense_variant MODERATE 250A>G Thr84Ala
M0211661 NANMJFCI_00025 29274 8 Gut 0.17 protein_coding synonymous_variant LOW 147A>G Ala49Ala
M0211662 NANMJFCI_00026 29439 6 Gut 0.13 protein_coding missense_variant MODERATE 585T>G Asp195Glu
M0211663 NANMJFCI_00026 29459 4 Gut 0.08 protein_coding synonymous_variant LOW 565C>A Arg189Arg
M0211664 NANMJFCI_00026 29469 6 Gut 0.13 protein_coding synonymous_variant LOW 555C>T Arg185Arg
M0211665 NANMJFCI_00026 29477 7 Gut 0.15 protein_coding missense_variant MODERATE 547A>G Thr183Ala
M0211666 NANMJFCI_00026 29895 6 Gut 0.13 protein_coding synonymous_variant LOW 129A>G Glu43Glu
M0211667 NANMJFCI_00027 30358 13 Gut 0.27 protein_coding synonymous_variant LOW 1050A>G Arg350Arg
M0211668 NANMJFCI_00027 30454 11 Gut 0.23 protein_coding synonymous_variant LOW 954C>T Thr318Thr
M0211669 NANMJFCI_00027 30588 6 Gut 0.13 protein_coding missense_variant MODERATE 820C>T Pro274Ser
M0211670 NANMJFCI_00027 30772 16 Gut 0.33 protein_coding missense_variant MODERATE 636T>G Phe212Leu
M0211671 NANMJFCI_00027 30774 16 Gut 0.33 protein_coding missense_variant MODERATE 634T>C Phe212Leu
M0211672 NANMJFCI_00027 30921 22 Gut 0.46 protein_coding missense_variant MODERATE 487A>G Ser163Gly
M0211673 NANMJFCI_00027 30940 17 Gut 0.35 protein_coding synonymous_variant LOW 468T>C Asp156Asp
M0211674 NANMJFCI_00027 30979 18 Gut 0.38 protein_coding synonymous_variant LOW 429C>T Asn143Asn
M0211675 NANMJFCI_00027 30985 16 Gut 0.33 protein_coding synonymous_variant LOW 423A>C Arg141Arg
M0211676 NANMJFCI_00027 31233 12 Gut 0.25 protein_coding missense_variant MODERATE 175G>A Ala59Thr
M0211677 NANMJFCI_00028 31471 13 Gut 0.27 protein_coding synonymous_variant LOW 246G>A Thr82Thr
M0211678 NANMJFCI_00028 31473 13 Gut 0.27 protein_coding missense_variant MODERATE 244A>G Thr82Ala
M0211679 NANMJFCI_00028 31566 8 Gut 0.17 protein_coding missense_variant MODERATE 151G>A Glu51Lys
M0211680 NANMJFCI_00028 31594 14 Gut 0.29 protein_coding synonymous_variant LOW 123T>C Gly41Gly
M0211681 NANMJFCI_00024 27508 6 Gut 0.13 protein_coding synonymous_variant LOW 1056A>G Lys352Lys
M0211682 NANMJFCI_00024 27526 6 Gut 0.13 protein_coding synonymous_variant LOW 1038T>G Gly346Gly
M0211683 NANMJFCI_00024 27564 6 Gut 0.13 protein_coding synonymous_variant LOW 1000T>C Leu334Leu
M0211684 NANMJFCI_00024 27573 6 Gut 0.13 protein_coding synonymous_variant LOW 991T>C Leu331Leu
M0211685 NANMJFCI_00024 27598 6 Gut 0.13 protein_coding synonymous_variant LOW 966A>G Ala322Ala
M0211686 NANMJFCI_00024 27667 4 Gut 0.08 protein_coding synonymous_variant LOW 897T>C Ile299Ile
M0211687 NANMJFCI_00024 27679 5 Gut 0.10 protein_coding missense_variant MODERATE 885A>C Glu295Asp
M0211688 NANMJFCI_00024 27682 3 Gut 0.06 protein_coding missense_variant MODERATE 882A>C Glu294Asp
M0211689 NANMJFCI_00024 27700 5 Gut 0.10 protein_coding synonymous_variant LOW 864C>T Phe288Phe
M0211690 NANMJFCI_00024 27806 5 Gut 0.10 protein_coding missense_variant MODERATE 758A>G Lys253Arg
M0211691 NANMJFCI_00024 27853 5 Gut 0.10 protein_coding synonymous_variant LOW 711C>T Arg237Arg
M0211692 NANMJFCI_00024 27862 5 Gut 0.10 protein_coding synonymous_variant LOW 702T>C Phe234Phe
M0211693 NANMJFCI_00024 27901 4 Gut 0.08 protein_coding synonymous_variant LOW 663C>G Ala221Ala
M0211694 NANMJFCI_00024 27919 4 Gut 0.08 protein_coding synonymous_variant LOW 645C>T Leu215Leu
M0211695 NANMJFCI_00024 28009 4 Gut 0.08 protein_coding synonymous_variant LOW 555A>C Gly185Gly
M0211696 NANMJFCI_00024 28023 4 Gut 0.08 protein_coding missense_variant MODERATE 541T>C Phe181Leu
M0211697 NANMJFCI_00024 28036 5 Gut 0.10 protein_coding synonymous_variant LOW 528T>C Ala176Ala
M0211698 NANMJFCI_00024 28096 6 Gut 0.13 protein_coding synonymous_variant LOW 468C>T Asn156Asn
M0211699 NANMJFCI_00024 28105 4 Gut 0.08 protein_coding synonymous_variant LOW 459C>T Cys153Cys
M0211700 NANMJFCI_00024 28111 6 Gut 0.13 protein_coding synonymous_variant LOW 453C>T Tyr151Tyr
M0211701 NANMJFCI_00024 28126 3 Gut 0.06 protein_coding synonymous_variant LOW 438G>A Ala146Ala
M0211702 NANMJFCI_00024 28129 3 Gut 0.06 protein_coding synonymous_variant LOW 435A>G Gly145Gly
M0211703 NANMJFCI_00024 28153 4 Gut 0.08 protein_coding synonymous_variant LOW 411C>T His137His
M0211704 NANMJFCI_00024 28165 5 Gut 0.10 protein_coding synonymous_variant LOW 399A>G Lys133Lys
M0211705 NANMJFCI_00024 28171 5 Gut 0.10 protein_coding synonymous_variant LOW 393C>T Ile131Ile
M0211706 NANMJFCI_00024 28186 5 Gut 0.10 protein_coding synonymous_variant LOW 378T>C Gly126Gly
M0211707 NANMJFCI_00024 28197 5 Gut 0.10 protein_coding missense_variant MODERATE 367A>G Ile123Val
M0211708 NANMJFCI_00024 28198 5 Gut 0.10 protein_coding synonymous_variant LOW 366C>T His122His
M0211709 NANMJFCI_00024 28260 5 Gut 0.10 protein_coding missense_variant MODERATE 304G>A Ala102Thr
M0211710 NANMJFCI_00024 28270 5 Gut 0.10 protein_coding synonymous_variant LOW 294C>A Gly98Gly
M0211711 NANMJFCI_00024 28386 6 Gut 0.13 protein_coding missense_variant MODERATE 178A>G Asn60Asp
M0211712 NANMJFCI_00024 28396 6 Gut 0.13 protein_coding synonymous_variant LOW 168T>C Arg56Arg
M0211713 NANMJFCI_00024 28507 4 Gut 0.08 protein_coding synonymous_variant LOW 57G>A Pro19Pro
M0211714 NANMJFCI_00025 28584 6 Gut 0.13 protein_coding synonymous_variant LOW 837G>A Ala279Ala
M0211715 NANMJFCI_00025 28588 6 Gut 0.13 protein_coding missense_variant MODERATE 833A>G Lys278Arg
M0211716 NANMJFCI_00025 28636 6 Gut 0.13 protein_coding missense_variant MODERATE 785C>T Ala262Val
M0211717 NANMJFCI_00025 28647 6 Gut 0.13 protein_coding synonymous_variant LOW 774T>C Asp258Asp
M0211718 NANMJFCI_00025 28782 6 Gut 0.13 protein_coding synonymous_variant LOW 639C>T Asp213Asp
M0211719 NANMJFCI_00025 28809 6 Gut 0.13 protein_coding synonymous_variant LOW 612C>T Asp204Asp
M0211720 NANMJFCI_00025 28812 6 Gut 0.13 protein_coding synonymous_variant LOW 609A>C Gly203Gly
M0211721 NANMJFCI_00025 28815 6 Gut 0.13 protein_coding synonymous_variant LOW 606A>G Ala202Ala
M0211722 NANMJFCI_00025 28875 6 Gut 0.13 protein_coding synonymous_variant LOW 546G>A Ala182Ala
M0211723 NANMJFCI_00025 28950 6 Gut 0.13 protein_coding synonymous_variant LOW 471G>A Pro157Pro
M0211724 NANMJFCI_00025 28952 6 Gut 0.13 protein_coding missense_variant MODERATE 469C>G Pro157Ala
M0211725 NANMJFCI_00025 28953 6 Gut 0.13 protein_coding synonymous_variant LOW 468C>A Thr156Thr
M0211726 NANMJFCI_00025 28962 6 Gut 0.13 protein_coding synonymous_variant LOW 459T>G Val153Val
M0211727 NANMJFCI_00025 29043 5 Gut 0.10 protein_coding synonymous_variant LOW 378T>C Pro126Pro
M0211728 NANMJFCI_00025 29379 7 Gut 0.15 protein_coding synonymous_variant LOW 42A>G Glu14Glu
M0211729 NANMJFCI_00026 29858 4 Gut 0.08 protein_coding synonymous_variant LOW 166C>T Leu56Leu
M0211730 NANMJFCI_00026 29862 5 Gut 0.10 protein_coding synonymous_variant LOW 162G>A Thr54Thr
M0211731 NANMJFCI_00026 29869 7 Gut 0.15 protein_coding missense_variant MODERATE 155A>G His52Arg
M0211732 NANMJFCI_00026 29940 8 Gut 0.17 protein_coding synonymous_variant LOW 84C>T Leu28Leu
M0211733 NANMJFCI_00026 30016 8 Gut 0.17 protein_coding missense_variant MODERATE 8T>C Met3Thr
M0211734 NANMJFCI_00027 30071 10 Gut 0.21 protein_coding missense_variant MODERATE 1337T>C Met446Thr
M0211735 NANMJFCI_00015 18641 10 Gut 0.21 protein_coding synonymous_variant LOW 772T>C Leu258Leu
M0211736 NANMJFCI_00015 18654 9 Gut 0.19 protein_coding synonymous_variant LOW 759G>A Glu253Glu
M0211737 NANMJFCI_00015 18699 9 Gut 0.19 protein_coding synonymous_variant LOW 714T>C Asp238Asp
M0211738 NANMJFCI_00015 18762 5 Gut 0.10 protein_coding synonymous_variant LOW 651G>T Leu217Leu
M0211739 NANMJFCI_00015 18787 10 Gut 0.21 protein_coding missense_variant MODERATE 626A>G Gln209Arg
M0211740 NANMJFCI_00015 18897 10 Gut 0.21 protein_coding synonymous_variant LOW 516A>G Glu172Glu
M0211741 NANMJFCI_00015 18930 10 Gut 0.21 protein_coding synonymous_variant LOW 483T>C Ser161Ser
M0211742 NANMJFCI_00015 18951 8 Gut 0.17 protein_coding synonymous_variant LOW 462C>T Arg154Arg
M0211743 NANMJFCI_00015 19226 7 Gut 0.15 protein_coding missense_variant MODERATE 187G>T Ala63Ser
M0211744 NANMJFCI_00015 19251 9 Gut 0.19 protein_coding synonymous_variant LOW 162T>C Tyr54Tyr
M0211745 NANMJFCI_00015 19307 3 Gut 0.06 protein_coding missense_variant MODERATE 106G>A Val36Ile
M0211746 NANMJFCI_00014 15689 7 Gut 0.15 protein_coding synonymous_variant LOW 1401A>G Thr467Thr
M0211747 NANMJFCI_00014 15701 5 Gut 0.10 protein_coding synonymous_variant LOW 1389T>C Thr463Thr
M0211748 NANMJFCI_00014 15743 8 Gut 0.17 protein_coding synonymous_variant LOW 1347A>G Leu449Leu
M0211749 NANMJFCI_00014 15754 6 Gut 0.13 protein_coding missense_variant MODERATE 1336A>G Thr446Ala
M0211750 NANMJFCI_00014 15761 8 Gut 0.17 protein_coding synonymous_variant LOW 1329G>C Gly443Gly
M0211751 NANMJFCI_00014 15794 8 Gut 0.17 protein_coding missense_variant MODERATE 1296T>G Ile432Met
M0211752 NANMJFCI_00014 15804 8 Gut 0.17 protein_coding missense_variant MODERATE 1286C>G Ala429Gly
M0211753 NANMJFCI_00014 15818 8 Gut 0.17 protein_coding synonymous_variant LOW 1272A>C Gly424Gly
M0211754 NANMJFCI_00014 15823 8 Gut 0.17 protein_coding synonymous_variant LOW 1267T>C Leu423Leu
M0211755 NANMJFCI_00014 15827 8 Gut 0.17 protein_coding synonymous_variant LOW 1263T>G Ser421Ser
M0211756 NANMJFCI_00014 16173 7 Gut 0.15 protein_coding missense_variant MODERATE 917G>A Gly306Glu
M0211757 NANMJFCI_00014 16517 4 Gut 0.08 protein_coding synonymous_variant LOW 573A>G Gln191Gln
M0211758 NANMJFCI_00014 16565 3 Gut 0.06 protein_coding synonymous_variant LOW 525C>T Gly175Gly
M0211759 NANMJFCI_00014 16706 5 Gut 0.10 protein_coding synonymous_variant LOW 384C>T Asn128Asn
M0211760 NANMJFCI_00014 16964 10 Gut 0.21 protein_coding missense_variant MODERATE 126C>G His42Gln
M0211761 NANMJFCI_00014 16980 4 Gut 0.08 protein_coding missense_variant MODERATE 110G>A Arg37Lys
M0211762 NANMJFCI_00014 16985 4 Gut 0.08 protein_coding missense_variant MODERATE 105G>T Met35Ile
M0211763 NANMJFCI_00014 16991 4 Gut 0.08 protein_coding synonymous_variant LOW 99T>A Gly33Gly
M0211764 NANMJFCI_00011 17093 5 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -4531T>C None
M0211765 NANMJFCI_00015 17133 4 Gut 0.08 protein_coding synonymous_variant LOW 2280A>G Gln760Gln
M0211766 NANMJFCI_00015 17147 3 Gut 0.06 protein_coding missense_variant MODERATE 2266C>T Pro756Ser
M0211767 NANMJFCI_00015 17274 10 Gut 0.21 protein_coding synonymous_variant LOW 2139A>G Ser713Ser
M0211768 NANMJFCI_00015 17294 11 Gut 0.23 protein_coding synonymous_variant LOW 2119T>C Leu707Leu
M0211769 NANMJFCI_00015 17295 10 Gut 0.21 protein_coding synonymous_variant LOW 2118G>A Val706Val
M0211770 NANMJFCI_00015 17298 11 Gut 0.23 protein_coding synonymous_variant LOW 2115C>T Leu705Leu
M0211771 NANMJFCI_00015 17322 11 Gut 0.23 protein_coding synonymous_variant LOW 2091C>T Ser697Ser
M0211772 NANMJFCI_00015 17490 9 Gut 0.19 protein_coding synonymous_variant LOW 1923C>T Arg641Arg
M0211773 NANMJFCI_00015 18087 5 Gut 0.10 protein_coding synonymous_variant LOW 1326T>C Gly442Gly
M0211774 NANMJFCI_00015 18273 7 Gut 0.15 protein_coding synonymous_variant LOW 1140T>C Pro380Pro
M0211775 NANMJFCI_00015 18279 3 Gut 0.06 protein_coding synonymous_variant LOW 1134G>A Ala378Ala
M0211776 NANMJFCI_00015 18290 9 Gut 0.19 protein_coding synonymous_variant LOW 1123T>C Leu375Leu
M0211777 NANMJFCI_00015 18294 9 Gut 0.19 protein_coding synonymous_variant LOW 1119A>G Glu373Glu
M0211778 NANMJFCI_00015 18398 9 Gut 0.19 protein_coding synonymous_variant LOW 1015T>C Leu339Leu
M0211779 NANMJFCI_00015 18399 9 Gut 0.19 protein_coding synonymous_variant LOW 1014C>T His338His
M0211780 NANMJFCI_00015 18444 7 Gut 0.15 protein_coding synonymous_variant LOW 969C>T Thr323Thr
M0211781 NANMJFCI_00016 19504 9 Gut 0.19 protein_coding stop_lost&splice_region_variant HIGH 118T>C Ter40Glnext*?
M0211782 NANMJFCI_00014 19638 9 Gut 0.19 protein_coding upstream_gene_variant MODIFIER -2549C>A None
M0211783 NANMJFCI_00014 19695 8 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -2606C>T None
M0211784 NANMJFCI_00024 28389 3 Gut 0.06 protein_coding missense_variant MODERATE 175G>A Glu59Lys
M0211785 NANMJFCI_00026 29928 6 Gut 0.13 protein_coding synonymous_variant LOW 96C>T Asn32Asn
M0211786 NANMJFCI_00027 30124 5 Gut 0.10 protein_coding synonymous_variant LOW 1284G>A Glu428Glu
M0211787 NANMJFCI_00027 30199 11 Gut 0.23 protein_coding synonymous_variant LOW 1209T>G Arg403Arg
M0211788 NANMJFCI_00027 30242 12 Gut 0.25 protein_coding missense_variant MODERATE 1166T>C Val389Ala
M0211789 NANMJFCI_00027 30279 10 Gut 0.21 protein_coding missense_variant MODERATE 1129G>A Glu377Lys
M0211790 NANMJFCI_00027 30304 12 Gut 0.25 protein_coding synonymous_variant LOW 1104A>G Ala368Ala
M0211791 NANMJFCI_00027 30794 13 Gut 0.27 protein_coding missense_variant MODERATE 614C>T Ala205Val
M0211792 NANMJFCI_00027 31066 10 Gut 0.21 protein_coding synonymous_variant LOW 342T>C Ile114Ile
M0211793 NANMJFCI_00027 31207 4 Gut 0.08 protein_coding synonymous_variant LOW 201C>T Arg67Arg
M0211794 NANMJFCI_00027 31239 3 Gut 0.06 protein_coding missense_variant MODERATE 169C>T Pro57Ser
M0211795 NANMJFCI_00027 31245 7 Gut 0.15 protein_coding missense_variant MODERATE 163G>A Ala55Thr
M0211796 NANMJFCI_00027 31320 3 Gut 0.06 protein_coding missense_variant MODERATE 88A>G Thr30Ala
M0211797 NANMJFCI_00028 31565 3 Gut 0.06 protein_coding missense_variant MODERATE 152A>C Glu51Ala
M0211798 NANMJFCI_00028 31576 3 Gut 0.06 protein_coding synonymous_variant LOW 141G>A Arg47Arg
M0211799 NANMJFCI_00027 31171 6 Gut 0.13 protein_coding synonymous_variant LOW 237C>T His79His
M0211800 NANMJFCI_00027 31174 10 Gut 0.21 protein_coding synonymous_variant LOW 234T>C Tyr78Tyr
M0211801 NANMJFCI_00028 31421 8 Gut 0.17 protein_coding missense_variant MODERATE 296G>A Arg99Lys
M0211802 NANMJFCI_00028 31429 3 Gut 0.06 protein_coding synonymous_variant LOW 288G>A Ser96Ser
M0211803 NANMJFCI_00028 31458 7 Gut 0.15 protein_coding synonymous_variant LOW 259C>T Leu87Leu
M0211804 NANMJFCI_00028 31477 5 Gut 0.10 protein_coding synonymous_variant LOW 240C>T Ser80Ser
M0211805 NANMJFCI_00028 31711 11 Gut 0.23 protein_coding synonymous_variant LOW 6A>C Arg2Arg
M0211806 NANMJFCI_00024 31862 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3299T>G None
M0211807 NANMJFCI_00024 31869 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3306T>C None
M0211808 NANMJFCI_00024 31874 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3311G>A None
M0211809 NANMJFCI_00024 31876 4 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3313T>C None
M0211810 NANMJFCI_00024 31943 6 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -3380A>G None
M0211811 NANMJFCI_00024 31945 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3382C>T None
M0211812 NANMJFCI_00029 32114 3 Gut 0.06 protein_coding synonymous_variant LOW 123C>T Thr41Thr
M0211813 NANMJFCI_00024 32319 5 Gut 0.10 protein_coding upstream_gene_variant MODIFIER -3756G>A None
M0211814 NANMJFCI_00030 32442 5 Gut 0.10 protein_coding missense_variant MODERATE 1088C>T Ala363Val
M0211815 NANMJFCI_00030 32447 5 Gut 0.10 protein_coding synonymous_variant LOW 1083A>G Ala361Ala
M0211816 NANMJFCI_00030 32458 5 Gut 0.10 protein_coding missense_variant MODERATE 1072T>C Phe358Leu
M0211817 NANMJFCI_00030 32531 4 Gut 0.08 protein_coding synonymous_variant LOW 999G>A Ala333Ala
M0211818 NANMJFCI_00030 32648 4 Gut 0.08 protein_coding synonymous_variant LOW 882T>A Leu294Leu
M0211819 NANMJFCI_00030 33048 3 Gut 0.06 protein_coding missense_variant MODERATE 482A>G Asn161Ser
M0211820 NANMJFCI_00030 33082 5 Gut 0.10 protein_coding synonymous_variant LOW 448T>C Leu150Leu
M0211821 NANMJFCI_00030 33137 4 Gut 0.08 protein_coding synonymous_variant LOW 393A>G Leu131Leu
M0211822 NANMJFCI_00030 33140 4 Gut 0.08 protein_coding synonymous_variant LOW 390T>C Ile130Ile
M0211823 NANMJFCI_00030 33170 3 Gut 0.06 protein_coding synonymous_variant LOW 360G>A Glu120Glu
M0211824 NANMJFCI_00030 33182 3 Gut 0.06 protein_coding synonymous_variant LOW 348A>G Glu116Glu
M0211825 NANMJFCI_00030 33191 5 Gut 0.10 protein_coding synonymous_variant LOW 339T>C Tyr113Tyr
M0211826 NANMJFCI_00030 33225 3 Gut 0.06 protein_coding missense_variant MODERATE 305T>G Ile102Arg
M0211827 NANMJFCI_00030 33248 4 Gut 0.08 protein_coding synonymous_variant LOW 282C>T Tyr94Tyr
M0211828 NANMJFCI_00030 33269 5 Gut 0.10 protein_coding synonymous_variant LOW 261T>C Thr87Thr
M0211829 NANMJFCI_00030 33274 5 Gut 0.10 protein_coding synonymous_variant LOW 256T>C Leu86Leu
M0211830 NANMJFCI_00030 33278 5 Gut 0.10 protein_coding synonymous_variant LOW 252A>G Gly84Gly
M0211831 NANMJFCI_00030 33283 5 Gut 0.10 protein_coding missense_variant MODERATE 247A>T Met83Leu
M0211832 NANMJFCI_00030 33284 5 Gut 0.10 protein_coding synonymous_variant LOW 246C>T Asp82Asp
M0211833 NANMJFCI_00030 33287 5 Gut 0.10 protein_coding synonymous_variant LOW 243A>C Gly81Gly
M0211834 NANMJFCI_00030 33289 5 Gut 0.10 protein_coding missense_variant MODERATE 241G>C Gly81Arg
M0211835 NANMJFCI_00030 33294 5 Gut 0.10 protein_coding missense_variant MODERATE 236T>C Val79Ala
M0211836 NANMJFCI_00014 15910 3 Gut 0.06 protein_coding missense_variant MODERATE 1180G>T Ala394Ser
M0211837 NANMJFCI_00014 16133 3 Gut 0.06 protein_coding synonymous_variant LOW 957T>C Asp319Asp
M0211838 NANMJFCI_00027 30970 9 Gut 0.19 protein_coding synonymous_variant LOW 438T>C Asp146Asp
M0211839 NANMJFCI_00027 30972 9 Gut 0.19 protein_coding missense_variant MODERATE 436G>A Asp146Asn
M0211840 NANMJFCI_00027 30981 10 Gut 0.21 protein_coding missense_variant MODERATE 427A>G Asn143Asp
M0211841 NANMJFCI_00027 31096 4 Gut 0.08 protein_coding synonymous_variant LOW 312A>G Arg104Arg
M0211842 NANMJFCI_00028 31423 5 Gut 0.10 protein_coding synonymous_variant LOW 294A>G Val98Val
M0211843 NANMJFCI_00028 31425 5 Gut 0.10 protein_coding missense_variant MODERATE 292G>T Val98Leu
M0211844 NANMJFCI_00028 31620 7 Gut 0.15 protein_coding missense_variant MODERATE 97A>G Lys33Glu
M0211845 NANMJFCI_00028 31699 3 Gut 0.06 protein_coding synonymous_variant LOW 18T>C Phe6Phe
M0211846 NANMJFCI_00028 31702 3 Gut 0.06 protein_coding synonymous_variant LOW 15A>G Thr5Thr
M0211847 NANMJFCI_00023 31747 7 Gut 0.15 protein_coding upstream_gene_variant MODIFIER -4985T>C None
M0211848 NANMJFCI_00024 31790 6 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -3227C>G None
M0211849 NANMJFCI_00024 31791 6 Gut 0.13 protein_coding upstream_gene_variant MODIFIER -3228T>A None
M0211850 NANMJFCI_00027 30799 3 Gut 0.06 protein_coding synonymous_variant LOW 609C>T Ala203Ala
M0211851 NANMJFCI_00027 30907 3 Gut 0.06 protein_coding synonymous_variant LOW 501T>A Ile167Ile
M0211852 NANMJFCI_00027 31063 5 Gut 0.10 protein_coding synonymous_variant LOW 345C>T Gly115Gly
M0211853 NANMJFCI_00024 31847 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3284C>T None
M0211854 NANMJFCI_00024 31895 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3332G>T None
M0211855 NANMJFCI_00024 31897 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3334T>C None
M0211856 NANMJFCI_00029 32021 3 Gut 0.06 protein_coding synonymous_variant LOW 30C>G Thr10Thr
M0211857 NANMJFCI_00029 32045 5 Gut 0.10 protein_coding synonymous_variant LOW 54A>G Leu18Leu
M0211858 NANMJFCI_00029 32063 3 Gut 0.06 protein_coding missense_variant MODERATE 72A>C Lys24Asn
M0211859 NANMJFCI_00029 32079 3 Gut 0.06 protein_coding synonymous_variant LOW 88T>C Leu30Leu
M0211860 NANMJFCI_00029 32106 3 Gut 0.06 protein_coding missense_variant MODERATE 115G>T Ala39Ser
M0211861 NANMJFCI_00029 32129 3 Gut 0.06 protein_coding synonymous_variant LOW 138A>G Lys46Lys
M0211862 NANMJFCI_00029 32156 3 Gut 0.06 protein_coding synonymous_variant LOW 165C>T Ala55Ala
M0211863 NANMJFCI_00029 32167 3 Gut 0.06 protein_coding missense_variant MODERATE 176C>T Ala59Val
M0211864 NANMJFCI_00029 32225 3 Gut 0.06 protein_coding missense_variant MODERATE 234T>A Asp78Glu
M0211865 NANMJFCI_00029 32246 3 Gut 0.06 protein_coding synonymous_variant LOW 255A>G Arg85Arg
M0211866 NANMJFCI_00030 32426 3 Gut 0.06 protein_coding synonymous_variant LOW 1104T>C Tyr368Tyr
M0211867 NANMJFCI_00030 32441 3 Gut 0.06 protein_coding synonymous_variant LOW 1089G>A Ala363Ala
M0211868 NANMJFCI_00030 32448 3 Gut 0.06 protein_coding missense_variant MODERATE 1082C>A Ala361Glu
M0211869 NANMJFCI_00030 32504 3 Gut 0.06 protein_coding synonymous_variant LOW 1026G>A Glu342Glu
M0211870 NANMJFCI_00030 32755 3 Gut 0.06 protein_coding missense_variant MODERATE 775G>A Ala259Thr
M0211871 NANMJFCI_00030 32770 4 Gut 0.08 protein_coding synonymous_variant LOW 760T>C Leu254Leu
M0211872 NANMJFCI_00030 32831 3 Gut 0.06 protein_coding synonymous_variant LOW 699A>G Glu233Glu
M0211873 NANMJFCI_00030 32841 3 Gut 0.06 protein_coding missense_variant MODERATE 689C>T Ala230Val
M0211874 NANMJFCI_00030 32849 4 Gut 0.08 protein_coding synonymous_variant LOW 681A>G Ala227Ala
M0211875 NANMJFCI_00030 32867 3 Gut 0.06 protein_coding synonymous_variant LOW 663C>T Cys221Cys
M0211876 NANMJFCI_00030 32880 3 Gut 0.06 protein_coding missense_variant MODERATE 650C>A Thr217Lys
M0211877 NANMJFCI_00030 32881 3 Gut 0.06 protein_coding missense_variant MODERATE 649A>G Thr217Ala
M0211878 NANMJFCI_00030 32893 3 Gut 0.06 protein_coding missense_variant MODERATE 637G>A Asp213Asn
M0211879 NANMJFCI_00030 32902 3 Gut 0.06 protein_coding missense_variant MODERATE 628A>G Ser210Gly
M0211880 NANMJFCI_00030 33110 3 Gut 0.06 protein_coding synonymous_variant LOW 420C>T Ser140Ser
M0211881 NANMJFCI_00027 30219 8 Gut 0.17 protein_coding missense_variant MODERATE 1189A>T Thr397Ser
M0211882 NANMJFCI_00026 29791 4 Gut 0.08 protein_coding missense_variant MODERATE 233A>G Gln78Arg
M0211883 NANMJFCI_00026 29793 4 Gut 0.08 protein_coding synonymous_variant LOW 231A>G Arg77Arg
M0211884 NANMJFCI_00026 29811 3 Gut 0.06 protein_coding synonymous_variant LOW 213A>G Glu71Glu
M0211885 NANMJFCI_00014 15488 3 Gut 0.06 protein_coding synonymous_variant LOW 1602A>C Gly534Gly
M0211886 NANMJFCI_00014 15566 4 Gut 0.08 protein_coding synonymous_variant LOW 1524A>G Gly508Gly
M0211887 NANMJFCI_00014 15641 4 Gut 0.08 protein_coding synonymous_variant LOW 1449T>C Gly483Gly
M0211888 NANMJFCI_00014 15665 3 Gut 0.06 protein_coding synonymous_variant LOW 1425G>C Gly475Gly
M0211889 NANMJFCI_00014 16181 5 Gut 0.10 protein_coding synonymous_variant LOW 909T>C Ile303Ile
M0211890 NANMJFCI_00014 16187 4 Gut 0.08 protein_coding synonymous_variant LOW 903T>C Ser301Ser
M0211891 NANMJFCI_00014 16196 4 Gut 0.08 protein_coding synonymous_variant LOW 894T>C Asp298Asp
M0211892 NANMJFCI_00014 16202 4 Gut 0.08 protein_coding synonymous_variant LOW 888A>G Ala296Ala
M0211893 NANMJFCI_00014 16211 4 Gut 0.08 protein_coding synonymous_variant LOW 879A>G Glu293Glu
M0211894 NANMJFCI_00014 16382 3 Gut 0.06 protein_coding synonymous_variant LOW 708T>C Val236Val
M0211895 NANMJFCI_00015 17373 5 Gut 0.10 protein_coding synonymous_variant LOW 2040C>T Ser680Ser
M0211896 NANMJFCI_00015 17690 5 Gut 0.10 protein_coding missense_variant MODERATE 1723G>A Asp575Asn
M0211897 NANMJFCI_00014 19443 4 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -2354G>A None
M0211898 NANMJFCI_00017 19764 7 Gut 0.15 protein_coding missense_variant MODERATE 667G>A Ala223Thr
M0211899 NANMJFCI_00017 19796 7 Gut 0.15 protein_coding missense_variant MODERATE 635C>A Ala212Glu
M0211900 NANMJFCI_00017 19840 5 Gut 0.10 protein_coding synonymous_variant LOW 591A>G Thr197Thr
M0211901 NANMJFCI_00017 19843 4 Gut 0.08 protein_coding synonymous_variant LOW 588G>A Glu196Glu
M0211902 NANMJFCI_00017 19892 6 Gut 0.13 protein_coding missense_variant MODERATE 539T>C Val180Ala
M0211903 NANMJFCI_00017 19895 4 Gut 0.08 protein_coding missense_variant MODERATE 536G>A Gly179Asp
M0211904 NANMJFCI_00017 19904 4 Gut 0.08 protein_coding missense_variant MODERATE 527A>G Glu176Gly
M0211905 NANMJFCI_00017 19905 4 Gut 0.08 protein_coding missense_variant MODERATE 526G>A Glu176Lys
M0211906 NANMJFCI_00017 19909 6 Gut 0.13 protein_coding synonymous_variant LOW 522C>T Gly174Gly
M0211907 NANMJFCI_00034 35817 3 Gut 0.06 protein_coding missense_variant MODERATE 6614G>A Arg2205Lys
M0211908 NANMJFCI_00034 36165 3 Gut 0.06 protein_coding missense_variant MODERATE 6266C>A Thr2089Lys
M0211909 NANMJFCI_00034 36695 3 Gut 0.06 protein_coding synonymous_variant LOW 5736C>T Asn1912Asn
M0211910 NANMJFCI_00034 37702 3 Gut 0.06 protein_coding synonymous_variant LOW 4729T>C Leu1577Leu
M0211911 NANMJFCI_00034 37805 3 Gut 0.06 protein_coding synonymous_variant LOW 4626G>T Ala1542Ala
M0211912 NANMJFCI_00034 37820 3 Gut 0.06 protein_coding synonymous_variant LOW 4611T>A Ala1537Ala
M0211913 NANMJFCI_00034 37821 3 Gut 0.06 protein_coding missense_variant MODERATE 4610C>T Ala1537Val
M0211914 NANMJFCI_00034 38027 3 Gut 0.06 protein_coding synonymous_variant LOW 4404T>C Asp1468Asp
M0211915 NANMJFCI_00034 38090 3 Gut 0.06 protein_coding synonymous_variant LOW 4341A>G Ala1447Ala
M0211916 NANMJFCI_00034 38165 3 Gut 0.06 protein_coding synonymous_variant LOW 4266A>G Val1422Val
M0211917 NANMJFCI_00034 38182 3 Gut 0.06 protein_coding synonymous_variant LOW 4249T>C Leu1417Leu
M0211918 NANMJFCI_00034 38186 3 Gut 0.06 protein_coding synonymous_variant LOW 4245T>C Phe1415Phe
M0211919 NANMJFCI_00034 38353 3 Gut 0.06 protein_coding missense_variant MODERATE 4078A>G Ser1360Gly
M0211920 NANMJFCI_00034 38361 3 Gut 0.06 protein_coding missense_variant MODERATE 4070G>C Gly1357Ala
M0211921 NANMJFCI_00034 38404 3 Gut 0.06 protein_coding missense_variant MODERATE 4027A>G Lys1343Glu
M0211922 NANMJFCI_00034 38444 3 Gut 0.06 protein_coding synonymous_variant LOW 3987G>C Gly1329Gly
M0211923 NANMJFCI_00034 38503 3 Gut 0.06 protein_coding missense_variant MODERATE 3928G>A Val1310Ile
M0211924 NANMJFCI_00034 38504 3 Gut 0.06 protein_coding synonymous_variant LOW 3927A>G Glu1309Glu
M0211925 NANMJFCI_00034 38744 3 Gut 0.06 protein_coding missense_variant MODERATE 3687A>C Glu1229Asp
M0211926 NANMJFCI_00034 39145 3 Gut 0.06 protein_coding missense_variant MODERATE 3286G>A Val1096Ile
M0211927 NANMJFCI_00034 39449 3 Gut 0.06 protein_coding synonymous_variant LOW 2982A>G Arg994Arg
M0211928 NANMJFCI_00034 39461 3 Gut 0.06 protein_coding synonymous_variant LOW 2970T>C Gly990Gly
M0211929 NANMJFCI_00034 39648 3 Gut 0.06 protein_coding missense_variant MODERATE 2783T>C Val928Ala
M0211930 NANMJFCI_00011 17091 3 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4529T>G None
M0211931 NANMJFCI_00015 17094 3 Gut 0.06 protein_coding splice_region_variant&stop_retained_variant LOW 2319G>A Ter773Ter
M0211932 NANMJFCI_00015 17772 3 Gut 0.06 protein_coding synonymous_variant LOW 1641C>T Leu547Leu
M0211933 NANMJFCI_00027 30949 4 Gut 0.08 protein_coding synonymous_variant LOW 459C>A Thr153Thr
M0211934 NANMJFCI_00027 30626 3 Gut 0.06 protein_coding missense_variant MODERATE 782A>C Gln261Pro
M0211935 NANMJFCI_00027 30538 5 Gut 0.10 protein_coding synonymous_variant LOW 870A>C Pro290Pro
M0211936 NANMJFCI_00027 30540 5 Gut 0.10 protein_coding missense_variant MODERATE 868C>T Pro290Ser
M0211937 NANMJFCI_00027 30547 3 Gut 0.06 protein_coding synonymous_variant LOW 861T>C Asn287Asn
M0211938 NANMJFCI_00027 30553 5 Gut 0.10 protein_coding synonymous_variant LOW 855A>G Lys285Lys
M0211939 NANMJFCI_00027 30563 4 Gut 0.08 protein_coding missense_variant MODERATE 845T>C Met282Thr
M0211940 NANMJFCI_00027 30567 3 Gut 0.06 protein_coding missense_variant MODERATE 841A>G Asn281Asp
M0211941 NANMJFCI_00027 30590 3 Gut 0.06 protein_coding missense_variant MODERATE 818T>C Val273Ala
M0211942 NANMJFCI_00027 30600 3 Gut 0.06 protein_coding missense_variant MODERATE 808A>G Thr270Ala
M0211943 NANMJFCI_00027 30603 4 Gut 0.08 protein_coding missense_variant MODERATE 805A>G Thr269Ala
M0211944 NANMJFCI_00027 30640 5 Gut 0.10 protein_coding synonymous_variant LOW 768T>C Arg256Arg
M0211945 NANMJFCI_00027 30839 4 Gut 0.08 protein_coding missense_variant MODERATE 569G>A Arg190His
M0211946 NANMJFCI_00024 27718 3 Gut 0.06 protein_coding synonymous_variant LOW 846C>T Ser282Ser
M0211947 NANMJFCI_00027 30469 5 Gut 0.10 protein_coding synonymous_variant LOW 939T>C Gly313Gly
M0211948 NANMJFCI_00027 30081 3 Gut 0.06 protein_coding synonymous_variant LOW 1327T>C Leu443Leu
M0211949 NANMJFCI_00015 17832 3 Gut 0.06 protein_coding synonymous_variant LOW 1581C>T His527His
M0211950 NANMJFCI_00015 17844 3 Gut 0.06 protein_coding synonymous_variant LOW 1569A>G Thr523Thr
M0211951 NANMJFCI_00014 15771 3 Gut 0.06 protein_coding missense_variant MODERATE 1319T>C Val440Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
NANMJFCI_00189 ACL77714.1|GH4 74.4 8.15e-254 1 440 1 1
NANMJFCI_00221 UWP67814.1|GT5 70.5 3.93e-252 1 474 1 1
NANMJFCI_00242 UQK39605.1|GH94 73.4 0 1 811 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term