Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1469
  Reference Plasmid   OY725877.1
  Reference Plasmid Size   266993
  Reference Plasmid GC Content   0.59
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0211952 BLLLFAIH_00083 83162 3 Gut 0.17 protein_coding synonymous_variant LOW 1290G>A Leu430Leu
M0211953 BLLLFAIH_00083 83462 6 Gut 0.33 protein_coding synonymous_variant LOW 990C>T Gly330Gly
M0211954 BLLLFAIH_00083 83540 7 Gut 0.39 protein_coding synonymous_variant LOW 912T>C Tyr304Tyr
M0211955 BLLLFAIH_00083 83546 6 Gut 0.33 protein_coding synonymous_variant LOW 906G>C Thr302Thr
M0211956 BLLLFAIH_00084 85070 6 Gut 0.33 protein_coding synonymous_variant LOW 582G>A Thr194Thr
M0211957 BLLLFAIH_00084 85094 7 Gut 0.39 protein_coding synonymous_variant LOW 558C>T Leu186Leu
M0211958 BLLLFAIH_00034 31654 3 Gut 0.17 protein_coding synonymous_variant LOW 489T>C Gly163Gly
M0211959 BLLLFAIH_00034 31906 3 Gut 0.17 protein_coding synonymous_variant LOW 741G>C Ala247Ala
M0211960 BLLLFAIH_00034 31997 3 Gut 0.17 protein_coding missense_variant MODERATE 832A>G Ile278Val
M0211961 BLLLFAIH_00034 32005 3 Gut 0.17 protein_coding synonymous_variant LOW 840A>G Lys280Lys
M0211962 BLLLFAIH_00034 32023 3 Gut 0.17 protein_coding synonymous_variant LOW 858A>G Val286Val
M0211963 BLLLFAIH_00034 32035 3 Gut 0.17 protein_coding synonymous_variant LOW 870T>C Asn290Asn
M0211964 BLLLFAIH_00034 32122 3 Gut 0.17 protein_coding synonymous_variant LOW 957G>A Thr319Thr
M0211965 BLLLFAIH_00034 32140 3 Gut 0.17 protein_coding synonymous_variant LOW 975G>A Gly325Gly
M0211966 BLLLFAIH_00034 32141 3 Gut 0.17 protein_coding synonymous_variant LOW 976C>T Leu326Leu
M0211967 BLLLFAIH_00034 32263 3 Gut 0.17 protein_coding synonymous_variant LOW 1098T>C His366His
M0211968 BLLLFAIH_00034 32350 3 Gut 0.17 protein_coding synonymous_variant LOW 1185T>C Leu395Leu
M0211969 BLLLFAIH_00034 32373 3 Gut 0.17 protein_coding missense_variant MODERATE 1208A>C Asn403Thr
M0211970 BLLLFAIH_00034 32377 3 Gut 0.17 protein_coding synonymous_variant LOW 1212C>T Asp404Asp
M0211971 BLLLFAIH_00034 32407 4 Gut 0.22 protein_coding synonymous_variant LOW 1242A>G Gln414Gln
M0211972 BLLLFAIH_00034 32416 4 Gut 0.22 protein_coding synonymous_variant LOW 1251G>A Glu417Glu
M0211973 BLLLFAIH_00034 32417 4 Gut 0.22 protein_coding synonymous_variant LOW 1252T>C Leu418Leu
M0211974 BLLLFAIH_00034 32422 4 Gut 0.22 protein_coding missense_variant MODERATE 1257C>A Asn419Lys
M0211975 BLLLFAIH_00034 32425 4 Gut 0.22 protein_coding synonymous_variant LOW 1260A>G Lys420Lys
M0211976 BLLLFAIH_00034 32428 4 Gut 0.22 protein_coding synonymous_variant LOW 1263G>A Ala421Ala
M0211977 BLLLFAIH_00034 32500 3 Gut 0.17 protein_coding synonymous_variant LOW 1335A>G Thr445Thr
M0211978 BLLLFAIH_00034 32536 3 Gut 0.17 protein_coding synonymous_variant LOW 1371G>A Gln457Gln
M0211979 BLLLFAIH_00085 86211 4 Gut 0.22 protein_coding synonymous_variant LOW 429C>A Thr143Thr
M0211980 BLLLFAIH_00079 83099 3 Gut 0.17 protein_coding upstream_gene_variant MODIFIER -4765T>C None
M0211981 BLLLFAIH_00083 84014 3 Gut 0.17 protein_coding synonymous_variant LOW 438A>C Val146Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism
BLLLFAIH_00027 ARO:3002629 73 2.5e-158 1 281 0.9757 0.9860 aminoglycoside antibiotic ANT(6) antibiotic inactivation






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term