Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1473
  Reference Plasmid   OY725995.1
  Reference Plasmid Size   76873
  Reference Plasmid GC Content   0.44
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0212608 DOELLBHE_00028 29530 5 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3703A>G None
M0212609 DOELLBHE_00028 29534 5 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3707C>T None
M0212610 DOELLBHE_00028 29539 5 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -3712T>A None
M0212611 DOELLBHE_00034 29556 15 Gut 0.23 protein_coding synonymous_variant LOW 6T>A Thr2Thr
M0212612 DOELLBHE_00034 29559 15 Gut 0.23 protein_coding synonymous_variant LOW 9G>A Gln3Gln
M0212613 DOELLBHE_00034 29566 15 Gut 0.23 protein_coding missense_variant MODERATE 16G>A Ala6Thr
M0212614 DOELLBHE_00034 29584 15 Gut 0.23 protein_coding missense_variant MODERATE 34A>G Thr12Ala
M0212615 DOELLBHE_00034 29586 15 Gut 0.23 protein_coding synonymous_variant LOW 36C>T Thr12Thr
M0212616 DOELLBHE_00034 29589 15 Gut 0.23 protein_coding synonymous_variant LOW 39G>A Lys13Lys
M0212617 DOELLBHE_00034 29595 17 Gut 0.26 protein_coding synonymous_variant LOW 45T>C Val15Val
M0212618 DOELLBHE_00034 29610 5 Gut 0.08 protein_coding synonymous_variant LOW 60T>C Asp20Asp
M0212619 DOELLBHE_00034 29619 5 Gut 0.08 protein_coding missense_variant MODERATE 69A>T Glu23Asp
M0212620 DOELLBHE_00034 29796 34 Gut 0.52 protein_coding synonymous_variant LOW 246C>G Val82Val
M0212621 DOELLBHE_00034 29817 56 Gut 0.85 protein_coding synonymous_variant LOW 267T>C Leu89Leu
M0212622 DOELLBHE_00034 29844 56 Gut 0.85 protein_coding synonymous_variant LOW 294T>C Pro98Pro
M0212623 DOELLBHE_00034 29994 53 Gut 0.80 protein_coding synonymous_variant LOW 444T>C Ser148Ser
M0212624 DOELLBHE_00034 30051 37 Gut 0.56 protein_coding synonymous_variant LOW 501G>A Gly167Gly
M0212625 DOELLBHE_00034 30090 56 Gut 0.85 protein_coding synonymous_variant LOW 540C>T Thr180Thr
M0212626 DOELLBHE_00034 30237 36 Gut 0.55 protein_coding synonymous_variant LOW 687G>A Glu229Glu
M0212627 DOELLBHE_00034 30270 57 Gut 0.86 protein_coding synonymous_variant LOW 720T>C Ala240Ala
M0212628 DOELLBHE_00034 30321 35 Gut 0.53 protein_coding synonymous_variant LOW 771C>T Gly257Gly
M0212629 DOELLBHE_00034 30327 41 Gut 0.62 protein_coding synonymous_variant LOW 777G>A Ala259Ala
M0212630 DOELLBHE_00034 30340 56 Gut 0.85 protein_coding synonymous_variant LOW 790T>C Leu264Leu
M0212631 DOELLBHE_00034 30375 56 Gut 0.85 protein_coding synonymous_variant LOW 825A>T Ser275Ser
M0212632 DOELLBHE_00028 30408 42 Gut 0.64 protein_coding upstream_gene_variant MODIFIER -4581A>T None
M0212633 DOELLBHE_00028 30424 56 Gut 0.85 protein_coding upstream_gene_variant MODIFIER -4597A>G None
M0212634 DOELLBHE_00035 30428 37 Gut 0.56 protein_coding missense_variant MODERATE 4G>A Glu2Lys
M0212635 DOELLBHE_00035 30439 56 Gut 0.85 protein_coding synonymous_variant LOW 15A>G Leu5Leu
M0212636 DOELLBHE_00035 30475 56 Gut 0.85 protein_coding synonymous_variant LOW 51G>A Gly17Gly
M0212637 DOELLBHE_00035 30508 56 Gut 0.85 protein_coding synonymous_variant LOW 84A>G Leu28Leu
M0212638 DOELLBHE_00035 30559 56 Gut 0.85 protein_coding synonymous_variant LOW 135T>C Tyr45Tyr
M0212639 DOELLBHE_00035 30592 52 Gut 0.79 protein_coding synonymous_variant LOW 168A>G Val56Val
M0212640 DOELLBHE_00035 30613 34 Gut 0.52 protein_coding synonymous_variant LOW 189C>T Gly63Gly
M0212641 DOELLBHE_00035 30640 56 Gut 0.85 protein_coding synonymous_variant LOW 216T>C Asn72Asn
M0212642 DOELLBHE_00035 30650 56 Gut 0.85 protein_coding missense_variant MODERATE 226A>G Asn76Asp
M0212643 DOELLBHE_00035 30706 52 Gut 0.79 protein_coding synonymous_variant LOW 282T>C Phe94Phe
M0212644 DOELLBHE_00035 30715 56 Gut 0.85 protein_coding synonymous_variant LOW 291T>A Gly97Gly
M0212645 DOELLBHE_00035 30748 52 Gut 0.79 protein_coding synonymous_variant LOW 324G>A Val108Val
M0212646 DOELLBHE_00035 30844 56 Gut 0.85 protein_coding synonymous_variant LOW 420A>G Lys140Lys
M0212647 DOELLBHE_00035 30853 56 Gut 0.85 protein_coding synonymous_variant LOW 429T>C Phe143Phe
M0212648 DOELLBHE_00035 30871 36 Gut 0.55 protein_coding synonymous_variant LOW 447G>A Val149Val
M0212649 DOELLBHE_00035 31223 59 Gut 0.89 protein_coding missense_variant MODERATE 799A>G Thr267Ala
M0212650 DOELLBHE_00035 31237 56 Gut 0.85 protein_coding synonymous_variant LOW 813T>C Ser271Ser
M0212651 DOELLBHE_00035 31249 55 Gut 0.83 protein_coding synonymous_variant LOW 825T>C Val275Val
M0212652 DOELLBHE_00035 31250 55 Gut 0.83 protein_coding missense_variant MODERATE 826A>G Thr276Ala
M0212653 DOELLBHE_00035 31252 58 Gut 0.88 protein_coding synonymous_variant LOW 828A>G Thr276Thr
M0212654 DOELLBHE_00035 31285 53 Gut 0.80 protein_coding synonymous_variant LOW 861C>T Ser287Ser
M0212655 DOELLBHE_00035 31294 60 Gut 0.91 protein_coding synonymous_variant LOW 870C>T Cys290Cys
M0212656 DOELLBHE_00035 31338 59 Gut 0.89 protein_coding missense_variant MODERATE 914G>A Arg305Lys
M0212657 DOELLBHE_00035 31343 55 Gut 0.83 protein_coding synonymous_variant LOW 919T>C Leu307Leu
M0212658 DOELLBHE_00035 31345 59 Gut 0.89 protein_coding synonymous_variant LOW 921A>G Leu307Leu
M0212659 DOELLBHE_00035 31420 43 Gut 0.65 protein_coding synonymous_variant LOW 996G>A Gln332Gln
M0212660 DOELLBHE_00035 31474 34 Gut 0.52 protein_coding synonymous_variant LOW 1050T>C Arg350Arg
M0212661 DOELLBHE_00035 31532 54 Gut 0.82 protein_coding missense_variant MODERATE 1108T>G Ser370Ala
M0212662 DOELLBHE_00035 31552 34 Gut 0.52 protein_coding synonymous_variant LOW 1128T>C Cys376Cys
M0212663 DOELLBHE_00035 31576 52 Gut 0.79 protein_coding synonymous_variant LOW 1152C>T Asn384Asn
M0212664 DOELLBHE_00035 31596 52 Gut 0.79 protein_coding splice_region_variant&stop_retained_variant LOW 1172A>G Ter391Ter
M0212665 DOELLBHE_00036 31697 50 Gut 0.76 protein_coding synonymous_variant LOW 54A>G Lys18Lys
M0212666 DOELLBHE_00036 31730 59 Gut 0.89 protein_coding synonymous_variant LOW 87A>T Ala29Ala
M0212667 DOELLBHE_00036 31748 50 Gut 0.76 protein_coding synonymous_variant LOW 105G>A Gln35Gln
M0212668 DOELLBHE_00036 31892 59 Gut 0.89 protein_coding synonymous_variant LOW 249T>C Tyr83Tyr
M0212669 DOELLBHE_00036 31904 59 Gut 0.89 protein_coding synonymous_variant LOW 261T>C His87His
M0212670 DOELLBHE_00036 31968 61 Gut 0.92 protein_coding missense_variant MODERATE 325T>C Ser109Pro
M0212671 DOELLBHE_00036 31970 50 Gut 0.76 protein_coding synonymous_variant LOW 327A>C Ser109Ser
M0212672 DOELLBHE_00036 31991 60 Gut 0.91 protein_coding synonymous_variant LOW 348A>G Gln116Gln
M0212673 DOELLBHE_00036 32138 60 Gut 0.91 protein_coding synonymous_variant LOW 495A>G Lys165Lys
M0212674 DOELLBHE_00036 32201 58 Gut 0.88 protein_coding synonymous_variant LOW 558C>A Pro186Pro
M0212675 DOELLBHE_00036 32216 58 Gut 0.88 protein_coding synonymous_variant LOW 573T>C Ser191Ser
M0212676 DOELLBHE_00036 32218 58 Gut 0.88 protein_coding missense_variant MODERATE 575G>A Cys192Tyr
M0212677 DOELLBHE_00036 32243 59 Gut 0.89 protein_coding synonymous_variant LOW 600A>G Gln200Gln
M0212678 DOELLBHE_00036 32247 58 Gut 0.88 protein_coding missense_variant MODERATE 604T>C Phe202Leu
M0212679 DOELLBHE_00036 32306 55 Gut 0.83 protein_coding synonymous_variant LOW 663T>C Ser221Ser
M0212680 DOELLBHE_00036 32324 52 Gut 0.79 protein_coding synonymous_variant LOW 681T>C Pro227Pro
M0212681 DOELLBHE_00036 32402 55 Gut 0.83 protein_coding synonymous_variant LOW 759C>T His253His
M0212682 DOELLBHE_00036 32453 60 Gut 0.91 protein_coding synonymous_variant LOW 810C>T Ser270Ser
M0212683 DOELLBHE_00036 32474 56 Gut 0.85 protein_coding synonymous_variant LOW 831C>T Asn277Asn
M0212684 DOELLBHE_00036 32477 55 Gut 0.83 protein_coding synonymous_variant LOW 834A>G Val278Val
M0212685 DOELLBHE_00036 32537 62 Gut 0.94 protein_coding synonymous_variant LOW 894T>C Asp298Asp
M0212686 DOELLBHE_00037 32678 58 Gut 0.88 protein_coding missense_variant MODERATE 728G>T Trp243Leu
M0212687 DOELLBHE_00037 32681 61 Gut 0.92 protein_coding missense_variant MODERATE 725A>G Asp242Gly
M0212688 DOELLBHE_00037 32734 62 Gut 0.94 protein_coding synonymous_variant LOW 672A>G Leu224Leu
M0212689 DOELLBHE_00037 32801 62 Gut 0.94 protein_coding missense_variant MODERATE 605G>A Arg202Lys
M0212690 DOELLBHE_00037 32842 62 Gut 0.94 protein_coding synonymous_variant LOW 564T>C Tyr188Tyr
M0212691 DOELLBHE_00037 32845 62 Gut 0.94 protein_coding synonymous_variant LOW 561A>G Pro187Pro
M0212692 DOELLBHE_00037 32893 63 Gut 0.95 protein_coding synonymous_variant LOW 513C>T Gly171Gly
M0212693 DOELLBHE_00037 32930 63 Gut 0.95 protein_coding missense_variant MODERATE 476T>C Val159Ala
M0212694 DOELLBHE_00037 32986 63 Gut 0.95 protein_coding synonymous_variant LOW 420C>A Val140Val
M0212695 DOELLBHE_00037 33011 62 Gut 0.94 protein_coding missense_variant MODERATE 395T>C Met132Thr
M0212696 DOELLBHE_00037 33018 63 Gut 0.95 protein_coding missense_variant MODERATE 388G>A Asp130Asn
M0212697 DOELLBHE_00037 33033 63 Gut 0.95 protein_coding missense_variant MODERATE 373T>C Tyr125His
M0212698 DOELLBHE_00037 33058 58 Gut 0.88 protein_coding synonymous_variant LOW 348T>C Arg116Arg
M0212699 DOELLBHE_00037 33066 63 Gut 0.95 protein_coding missense_variant MODERATE 340T>C Tyr114His
M0212700 DOELLBHE_00037 33072 63 Gut 0.95 protein_coding missense_variant MODERATE 334A>G Thr112Ala
M0212701 DOELLBHE_00037 33093 62 Gut 0.94 protein_coding missense_variant MODERATE 313A>G Thr105Ala
M0212702 DOELLBHE_00037 33100 58 Gut 0.88 protein_coding synonymous_variant LOW 306A>C Ala102Ala
M0212703 DOELLBHE_00037 33112 58 Gut 0.88 protein_coding synonymous_variant LOW 294A>G Glu98Glu
M0212704 DOELLBHE_00037 33115 62 Gut 0.94 protein_coding synonymous_variant LOW 291A>G Glu97Glu
M0212705 DOELLBHE_00037 33132 57 Gut 0.86 protein_coding missense_variant MODERATE 274G>A Glu92Lys
M0212706 DOELLBHE_00037 33163 63 Gut 0.95 protein_coding synonymous_variant LOW 243T>A Thr81Thr
M0212707 DOELLBHE_00026 27876 6 Gut 0.09 protein_coding upstream_gene_variant MODIFIER -4635A>C None
M0212708 DOELLBHE_00026 27948 3 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4707C>T None
M0212709 DOELLBHE_00031 27997 8 Gut 0.12 protein_coding missense_variant MODERATE 35T>C Val12Ala
M0212710 DOELLBHE_00031 28001 5 Gut 0.08 protein_coding synonymous_variant LOW 39T>G Gly13Gly
M0212711 DOELLBHE_00031 28072 3 Gut 0.05 protein_coding missense_variant MODERATE 110G>A Arg37Lys
M0212712 DOELLBHE_00031 28082 3 Gut 0.05 protein_coding synonymous_variant LOW 120G>T Pro40Pro
M0212713 DOELLBHE_00031 28151 8 Gut 0.12 protein_coding synonymous_variant LOW 189T>C Asn63Asn
M0212714 DOELLBHE_00032 28332 4 Gut 0.06 protein_coding synonymous_variant LOW 162C>T Ser54Ser
M0212715 DOELLBHE_00032 28362 6 Gut 0.09 protein_coding synonymous_variant LOW 192T>C Phe64Phe
M0212716 DOELLBHE_00032 28404 6 Gut 0.09 protein_coding synonymous_variant LOW 234G>T Ala78Ala
M0212717 DOELLBHE_00032 28453 7 Gut 0.11 protein_coding missense_variant MODERATE 283A>C Lys95Gln
M0212718 DOELLBHE_00032 28491 5 Gut 0.08 protein_coding synonymous_variant LOW 321G>A Val107Val
M0212719 DOELLBHE_00032 28536 5 Gut 0.08 protein_coding synonymous_variant LOW 366A>G Gly122Gly
M0212720 DOELLBHE_00032 28635 5 Gut 0.08 protein_coding synonymous_variant LOW 465C>T Ile155Ile
M0212721 DOELLBHE_00032 28899 5 Gut 0.08 protein_coding synonymous_variant LOW 729C>T Gly243Gly
M0212722 DOELLBHE_00032 28932 5 Gut 0.08 protein_coding synonymous_variant LOW 762T>C Gly254Gly
M0212723 DOELLBHE_00032 28944 5 Gut 0.08 protein_coding synonymous_variant LOW 774G>A Glu258Glu
M0212724 DOELLBHE_00032 29073 5 Gut 0.08 protein_coding synonymous_variant LOW 903G>T Pro301Pro
M0212725 DOELLBHE_00032 29085 5 Gut 0.08 protein_coding missense_variant MODERATE 915A>T Glu305Asp
M0212726 DOELLBHE_00037 32857 8 Gut 0.12 protein_coding synonymous_variant LOW 549C>T Gly183Gly
M0212727 DOELLBHE_00037 33193 3 Gut 0.05 protein_coding synonymous_variant LOW 213T>G Gly71Gly
M0212728 DOELLBHE_00034 29601 14 Gut 0.21 protein_coding synonymous_variant LOW 51T>C Thr17Thr
M0212729 DOELLBHE_00034 29775 14 Gut 0.21 protein_coding synonymous_variant LOW 225A>G Gly75Gly
M0212730 DOELLBHE_00034 29934 14 Gut 0.21 protein_coding synonymous_variant LOW 384A>G Ala128Ala
M0212731 DOELLBHE_00034 30054 16 Gut 0.24 protein_coding synonymous_variant LOW 504G>A Val168Val
M0212732 DOELLBHE_00035 30587 17 Gut 0.26 protein_coding missense_variant MODERATE 163G>T Ala55Ser
M0212733 DOELLBHE_00035 30907 15 Gut 0.23 protein_coding synonymous_variant LOW 483C>T Ala161Ala
M0212734 DOELLBHE_00035 30928 17 Gut 0.26 protein_coding synonymous_variant LOW 504A>G Val168Val
M0212735 DOELLBHE_00035 31025 16 Gut 0.24 protein_coding missense_variant MODERATE 601G>T Ala201Ser
M0212736 DOELLBHE_00035 31039 16 Gut 0.24 protein_coding synonymous_variant LOW 615G>A Arg205Arg
M0212737 DOELLBHE_00035 31435 14 Gut 0.21 protein_coding synonymous_variant LOW 1011T>C Cys337Cys
M0212738 DOELLBHE_00036 32127 20 Gut 0.30 protein_coding missense_variant MODERATE 484G>A Val162Ile
M0212739 DOELLBHE_00035 31059 4 Gut 0.06 protein_coding missense_variant MODERATE 635G>A Gly212Glu
M0212740 DOELLBHE_00035 31118 3 Gut 0.05 protein_coding missense_variant MODERATE 694G>A Glu232Lys
M0212741 DOELLBHE_00036 32075 4 Gut 0.06 protein_coding synonymous_variant LOW 432C>T Ile144Ile
M0212742 DOELLBHE_00036 32087 4 Gut 0.06 protein_coding synonymous_variant LOW 444T>C Cys148Cys
M0212743 DOELLBHE_00036 32294 5 Gut 0.08 protein_coding synonymous_variant LOW 651G>A Val217Val
M0212744 DOELLBHE_00036 32429 5 Gut 0.08 protein_coding synonymous_variant LOW 786C>T Ser262Ser
M0212745 DOELLBHE_00036 32501 4 Gut 0.06 protein_coding synonymous_variant LOW 858T>C Val286Val
M0212746 DOELLBHE_00033 32598 4 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3142C>T None
M0212747 DOELLBHE_00033 32599 4 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3143T>G None
M0212748 DOELLBHE_00033 32600 4 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3144G>T None
M0212749 DOELLBHE_00033 32627 4 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3171G>A None
M0212750 DOELLBHE_00033 32635 4 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -3179A>T None
M0212751 DOELLBHE_00037 32817 5 Gut 0.08 protein_coding missense_variant MODERATE 589C>T His197Tyr
M0212752 DOELLBHE_00037 32955 5 Gut 0.08 protein_coding missense_variant MODERATE 451A>G Thr151Ala
M0212753 DOELLBHE_00036 31951 5 Gut 0.08 protein_coding missense_variant MODERATE 308C>T Thr103Ile
M0212754 DOELLBHE_00036 32028 4 Gut 0.06 protein_coding missense_variant MODERATE 385C>T Pro129Ser
M0212755 DOELLBHE_00037 33013 4 Gut 0.06 protein_coding synonymous_variant LOW 393G>A Glu131Glu
M0212756 DOELLBHE_00037 33026 4 Gut 0.06 protein_coding missense_variant MODERATE 380T>A Leu127Gln
M0212757 DOELLBHE_00037 33079 4 Gut 0.06 protein_coding synonymous_variant LOW 327C>T Thr109Thr
M0212758 DOELLBHE_00037 33143 4 Gut 0.06 protein_coding missense_variant MODERATE 263C>T Ala88Val
M0212759 DOELLBHE_00035 31522 3 Gut 0.05 protein_coding synonymous_variant LOW 1098C>T Ser366Ser
M0212760 DOELLBHE_00026 27777 7 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4536T>A None
M0212761 DOELLBHE_00026 27778 7 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4537C>A None
M0212762 DOELLBHE_00026 27790 4 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4549C>G None
M0212763 DOELLBHE_00026 27791 4 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4550C>T None
M0212764 DOELLBHE_00026 27792 5 Gut 0.08 protein_coding upstream_gene_variant MODIFIER -4551T>A None
M0212765 DOELLBHE_00026 27793 4 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4552A>G None
M0212766 DOELLBHE_00026 27819 7 Gut 0.11 protein_coding upstream_gene_variant MODIFIER -4578A>G None
M0212767 DOELLBHE_00031 28028 4 Gut 0.06 protein_coding synonymous_variant LOW 66A>G Arg22Arg
M0212768 DOELLBHE_00035 30766 4 Gut 0.06 protein_coding synonymous_variant LOW 342G>A Leu114Leu
M0212769 DOELLBHE_00026 27676 3 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4435T>C None
M0212770 DOELLBHE_00026 27694 3 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4453G>A None
M0212771 DOELLBHE_00026 27707 3 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4466T>C None
M0212772 DOELLBHE_00026 27731 3 Gut 0.05 protein_coding upstream_gene_variant MODIFIER -4490A>G None
M0212773 DOELLBHE_00026 27749 4 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4508T>C None
M0212774 DOELLBHE_00026 27752 4 Gut 0.06 protein_coding upstream_gene_variant MODIFIER -4511T>C None
M0212775 DOELLBHE_00035 30700 3 Gut 0.05 protein_coding synonymous_variant LOW 276T>G Gly92Gly
M0212776 DOELLBHE_00035 31027 3 Gut 0.05 protein_coding synonymous_variant LOW 603G>A Ala201Ala
M0212777 DOELLBHE_00037 32680 3 Gut 0.05 protein_coding synonymous_variant LOW 726C>T Asp242Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term