Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1475
  Reference Plasmid   OY726016.1
  Reference Plasmid Size   36212
  Reference Plasmid GC Content   0.38
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0212832 BBINCFCB_00001 560 3 Gut 0.38 protein_coding downstream_gene_variant MODIFIER *240A>G None
M0212833 BBINCFCB_00001 779 3 Gut 0.38 protein_coding downstream_gene_variant MODIFIER *21A>G None
M0212834 BBINCFCB_00001 871 3 Gut 0.38 protein_coding synonymous_variant LOW 1012T>C Leu338Leu
M0212835 BBINCFCB_00001 1107 4 Gut 0.50 protein_coding missense_variant MODERATE 776T>C Ile259Thr
M0212836 BBINCFCB_00001 1124 3 Gut 0.38 protein_coding synonymous_variant LOW 759T>C Thr253Thr
M0212837 BBINCFCB_00001 1782 3 Gut 0.38 protein_coding missense_variant MODERATE 101T>C Leu34Ser
M0212838 BBINCFCB_00001 1793 3 Gut 0.38 protein_coding missense_variant MODERATE 90A>G Ile30Met
M0212839 BBINCFCB_00001 1805 3 Gut 0.38 protein_coding synonymous_variant LOW 78T>C Ser26Ser
M0212840 BBINCFCB_00004 6260 3 Gut 0.38 protein_coding synonymous_variant LOW 1443T>C Thr481Thr
M0212841 BBINCFCB_00004 6446 4 Gut 0.50 protein_coding synonymous_variant LOW 1257C>T Ala419Ala
M0212842 BBINCFCB_00004 6512 4 Gut 0.50 protein_coding synonymous_variant LOW 1191C>T Asp397Asp
M0212843 BBINCFCB_00004 6647 4 Gut 0.50 protein_coding synonymous_variant LOW 1056T>C Tyr352Tyr
M0212844 BBINCFCB_00004 6839 4 Gut 0.50 protein_coding synonymous_variant LOW 864C>T Asp288Asp
M0212845 BBINCFCB_00004 6854 4 Gut 0.50 protein_coding synonymous_variant LOW 849A>T Thr283Thr
M0212846 BBINCFCB_00004 7004 4 Gut 0.50 protein_coding synonymous_variant LOW 699T>C Gly233Gly
M0212847 BBINCFCB_00004 7097 4 Gut 0.50 protein_coding synonymous_variant LOW 606T>C Asp202Asp
M0212848 BBINCFCB_00004 7148 4 Gut 0.50 protein_coding synonymous_variant LOW 555A>G Thr185Thr
M0212849 BBINCFCB_00004 7211 3 Gut 0.38 protein_coding synonymous_variant LOW 492C>T Asn164Asn
M0212850 BBINCFCB_00004 7391 4 Gut 0.50 protein_coding synonymous_variant LOW 312C>A Gly104Gly
M0212851 BBINCFCB_00004 7490 4 Gut 0.50 protein_coding synonymous_variant LOW 213A>G Thr71Thr
M0212852 BBINCFCB_00004 7529 4 Gut 0.50 protein_coding synonymous_variant LOW 174G>A Ala58Ala
M0212853 BBINCFCB_00004 7532 4 Gut 0.50 protein_coding synonymous_variant LOW 171T>C Gly57Gly
M0212854 BBINCFCB_00004 7673 4 Gut 0.50 protein_coding synonymous_variant LOW 30C>T Ser10Ser
M0212855 BBINCFCB_00003 7758 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3248A>G None
M0212856 BBINCFCB_00003 7769 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3259T>C None
M0212857 BBINCFCB_00003 7771 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3261A>G None
M0212858 BBINCFCB_00003 7772 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3262G>A None
M0212859 BBINCFCB_00003 7870 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3360C>T None
M0212860 BBINCFCB_00003 7885 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3375G>A None
M0212861 BBINCFCB_00003 7896 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3386A>T None
M0212862 BBINCFCB_00003 7897 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3387A>T None
M0212863 BBINCFCB_00003 7936 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3426T>C None
M0212864 BBINCFCB_00003 7937 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3427G>A None
M0212865 BBINCFCB_00003 7967 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3457T>C None
M0212866 BBINCFCB_00003 7974 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3464T>C None
M0212867 BBINCFCB_00003 7989 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3479C>T None
M0212868 BBINCFCB_00003 7992 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3482A>G None
M0212869 BBINCFCB_00003 8028 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3518C>T None
M0212870 BBINCFCB_00003 8039 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3529G>A None
M0212871 BBINCFCB_00003 8063 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3553A>G None
M0212872 BBINCFCB_00003 8065 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3555T>C None
M0212873 BBINCFCB_00003 8079 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3569G>A None
M0212874 BBINCFCB_00003 8133 4 Gut 0.50 protein_coding upstream_gene_variant MODIFIER -3623C>A None
M0212875 BBINCFCB_00005 8392 4 Gut 0.50 protein_coding synonymous_variant LOW 177G>A Lys59Lys
M0212876 BBINCFCB_00003 7895 3 Gut 0.38 protein_coding upstream_gene_variant MODIFIER -3385A>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term