Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C3417
  Reference Plasmid   SRR2005651_bin.2__k91_10589
  Reference Plasmid Size   4779
  Reference Plasmid GC Content   0.34
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0117117 FBFHFPKJ_00001 41 5 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -251T>C None
M0117118 FBFHFPKJ_00001 427 6 Skin 0.38 protein_coding missense_variant MODERATE 136T>C Phe46Leu
M0117119 FBFHFPKJ_00001 437 6 Skin 0.38 protein_coding missense_variant MODERATE 146C>T Thr49Ile
M0117120 FBFHFPKJ_00002 742 9 Skin 0.56 protein_coding synonymous_variant LOW 357T>C Asp119Asp
M0117121 FBFHFPKJ_00003 1140 10 Skin 0.63 protein_coding stop_lost&splice_region_variant HIGH 987A>C Ter329Tyrext*?
M0117122 FBFHFPKJ_00003 1278 7 Skin 0.44 protein_coding synonymous_variant LOW 849C>T Asn283Asn
M0117123 FBFHFPKJ_00003 1925 4 Skin 0.25 protein_coding missense_variant MODERATE 202G>A Glu68Lys
M0117124 FBFHFPKJ_00004 2718 7 Skin 0.44 protein_coding synonymous_variant LOW 801C>T His267His
M0117125 FBFHFPKJ_00004 2736 11 Skin 0.69 protein_coding synonymous_variant LOW 783G>T Val261Val
M0117126 FBFHFPKJ_00004 2739 9 Skin 0.56 protein_coding synonymous_variant LOW 780T>C Ile260Ile
M0117127 FBFHFPKJ_00004 3321 3 Skin 0.19 protein_coding synonymous_variant LOW 198T>A Gly66Gly
M0117128 FBFHFPKJ_00004 3465 4 Skin 0.25 protein_coding synonymous_variant LOW 54T>A Thr18Thr
M0117129 FBFHFPKJ_00005 3610 5 Skin 0.31 protein_coding synonymous_variant LOW 810C>T Ser270Ser
M0117130 FBFHFPKJ_00002 4509 10 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -3411G>A None
M0117131 FBFHFPKJ_00002 4572 10 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -3474G>A None
M0117132 FBFHFPKJ_00002 4668 10 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -3570T>C None
M0117133 FBFHFPKJ_00001 426 3 Skin 0.19 protein_coding synonymous_variant LOW 135A>C Thr45Thr
M0117134 FBFHFPKJ_00002 619 3 Skin 0.19 protein_coding synonymous_variant LOW 480A>C Ile160Ile
M0117135 FBFHFPKJ_00002 673 3 Skin 0.19 protein_coding synonymous_variant LOW 426A>G Pro142Pro
M0117136 FBFHFPKJ_00002 730 6 Skin 0.38 protein_coding synonymous_variant LOW 369A>G Glu123Glu
M0117137 FBFHFPKJ_00002 763 3 Skin 0.19 protein_coding synonymous_variant LOW 336C>T Asn112Asn
M0117138 FBFHFPKJ_00002 820 5 Skin 0.31 protein_coding synonymous_variant LOW 279C>A Ala93Ala
M0117139 FBFHFPKJ_00002 829 3 Skin 0.19 protein_coding synonymous_variant LOW 270C>T Gly90Gly
M0117140 FBFHFPKJ_00002 847 3 Skin 0.19 protein_coding synonymous_variant LOW 252A>C Leu84Leu
M0117141 FBFHFPKJ_00002 886 3 Skin 0.19 protein_coding synonymous_variant LOW 213T>A Ile71Ile
M0117142 FBFHFPKJ_00002 943 3 Skin 0.19 protein_coding synonymous_variant LOW 156A>G Thr52Thr
M0117143 FBFHFPKJ_00002 979 3 Skin 0.19 protein_coding synonymous_variant LOW 120A>G Leu40Leu
M0117144 FBFHFPKJ_00002 1003 3 Skin 0.19 protein_coding synonymous_variant LOW 96A>T Ile32Ile
M0117145 FBFHFPKJ_00002 1006 3 Skin 0.19 protein_coding synonymous_variant LOW 93A>G Leu31Leu
M0117146 FBFHFPKJ_00002 1030 3 Skin 0.19 protein_coding synonymous_variant LOW 69T>A Thr23Thr
M0117147 FBFHFPKJ_00003 1344 6 Skin 0.38 protein_coding synonymous_variant LOW 783A>G Lys261Lys
M0117148 FBFHFPKJ_00003 1365 6 Skin 0.38 protein_coding synonymous_variant LOW 762G>A Arg254Arg
M0117149 FBFHFPKJ_00003 1743 6 Skin 0.38 protein_coding synonymous_variant LOW 384G>A Val128Val
M0117150 FBFHFPKJ_00003 1892 6 Skin 0.38 protein_coding missense_variant MODERATE 235G>C Asp79His
M0117151 FBFHFPKJ_00003 1896 8 Skin 0.50 protein_coding synonymous_variant LOW 231A>G Leu77Leu
M0117152 FBFHFPKJ_00003 1995 5 Skin 0.31 protein_coding synonymous_variant LOW 132A>G Lys44Lys
M0117153 FBFHFPKJ_00003 2013 8 Skin 0.50 protein_coding synonymous_variant LOW 114T>C Gly38Gly
M0117154 FBFHFPKJ_00003 2019 7 Skin 0.44 protein_coding synonymous_variant LOW 108T>G Val36Val
M0117155 FBFHFPKJ_00003 2092 6 Skin 0.38 protein_coding missense_variant MODERATE 35G>A Arg12His
M0117156 FBFHFPKJ_00002 2142 4 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -1044T>C None
M0117157 FBFHFPKJ_00002 2204 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -1106T>G None
M0117158 FBFHFPKJ_00002 2205 8 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1107A>C None
M0117159 FBFHFPKJ_00002 2247 4 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -1149T>C None
M0117160 FBFHFPKJ_00002 2284 5 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -1186C>T None
M0117161 FBFHFPKJ_00002 2289 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -1191A>T None
M0117162 FBFHFPKJ_00002 2292 10 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -1194C>T None
M0117163 FBFHFPKJ_00002 2340 8 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1242G>A None
M0117164 FBFHFPKJ_00002 2363 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -1265T>G None
M0117165 FBFHFPKJ_00002 2368 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -1270A>G None
M0117166 FBFHFPKJ_00004 2376 6 Skin 0.38 protein_coding synonymous_variant LOW 1143A>G Arg381Arg
M0117167 FBFHFPKJ_00004 2390 4 Skin 0.25 protein_coding synonymous_variant LOW 1129T>C Leu377Leu
M0117168 FBFHFPKJ_00004 2421 3 Skin 0.19 protein_coding synonymous_variant LOW 1098A>G Thr366Thr
M0117169 FBFHFPKJ_00004 2475 3 Skin 0.19 protein_coding synonymous_variant LOW 1044C>T Ala348Ala
M0117170 FBFHFPKJ_00004 2499 6 Skin 0.38 protein_coding synonymous_variant LOW 1020G>A Ala340Ala
M0117171 FBFHFPKJ_00004 2538 6 Skin 0.38 protein_coding synonymous_variant LOW 981T>A Val327Val
M0117172 FBFHFPKJ_00004 2568 4 Skin 0.25 protein_coding synonymous_variant LOW 951C>T Tyr317Tyr
M0117173 FBFHFPKJ_00004 2610 6 Skin 0.38 protein_coding synonymous_variant LOW 909A>G Lys303Lys
M0117174 FBFHFPKJ_00004 2640 6 Skin 0.38 protein_coding synonymous_variant LOW 879G>T Gly293Gly
M0117175 FBFHFPKJ_00004 2644 7 Skin 0.44 protein_coding missense_variant MODERATE 875C>G Thr292Ser
M0117176 FBFHFPKJ_00004 2874 6 Skin 0.38 protein_coding synonymous_variant LOW 645T>C Asp215Asp
M0117177 FBFHFPKJ_00004 2875 7 Skin 0.44 protein_coding missense_variant MODERATE 644A>C Asp215Ala
M0117178 FBFHFPKJ_00004 2919 6 Skin 0.38 protein_coding synonymous_variant LOW 600C>T Gly200Gly
M0117179 FBFHFPKJ_00004 2976 6 Skin 0.38 protein_coding synonymous_variant LOW 543C>T Asn181Asn
M0117180 FBFHFPKJ_00004 3015 6 Skin 0.38 protein_coding synonymous_variant LOW 504T>C Ser168Ser
M0117181 FBFHFPKJ_00004 3036 8 Skin 0.50 protein_coding synonymous_variant LOW 483A>G Ala161Ala
M0117182 FBFHFPKJ_00004 3072 4 Skin 0.25 protein_coding synonymous_variant LOW 447G>A Leu149Leu
M0117183 FBFHFPKJ_00004 3408 5 Skin 0.31 protein_coding synonymous_variant LOW 111T>G Gly37Gly
M0117184 FBFHFPKJ_00005 3571 7 Skin 0.44 protein_coding synonymous_variant LOW 849A>G Gly283Gly
M0117185 FBFHFPKJ_00005 3602 7 Skin 0.44 protein_coding missense_variant MODERATE 818A>C Asn273Thr
M0117186 FBFHFPKJ_00005 3628 7 Skin 0.44 protein_coding synonymous_variant LOW 792G>A Ala264Ala
M0117187 FBFHFPKJ_00005 3685 8 Skin 0.50 protein_coding synonymous_variant LOW 735C>T Val245Val
M0117188 FBFHFPKJ_00005 3691 8 Skin 0.50 protein_coding synonymous_variant LOW 729A>G Lys243Lys
M0117189 FBFHFPKJ_00005 3712 8 Skin 0.50 protein_coding missense_variant MODERATE 708A>C Lys236Asn
M0117190 FBFHFPKJ_00005 3718 8 Skin 0.50 protein_coding synonymous_variant LOW 702C>T Ala234Ala
M0117191 FBFHFPKJ_00005 3865 6 Skin 0.38 protein_coding synonymous_variant LOW 555G>T Thr185Thr
M0117192 FBFHFPKJ_00005 3895 6 Skin 0.38 protein_coding synonymous_variant LOW 525G>C Thr175Thr
M0117193 FBFHFPKJ_00005 3907 6 Skin 0.38 protein_coding synonymous_variant LOW 513G>T Gly171Gly
M0117194 FBFHFPKJ_00005 4079 6 Skin 0.38 protein_coding missense_variant MODERATE 341C>T Ala114Val
M0117195 FBFHFPKJ_00005 4087 7 Skin 0.44 protein_coding synonymous_variant LOW 333C>T Thr111Thr
M0117196 FBFHFPKJ_00005 4189 6 Skin 0.38 protein_coding synonymous_variant LOW 231T>C Ala77Ala
M0117197 FBFHFPKJ_00005 4207 7 Skin 0.44 protein_coding synonymous_variant LOW 213C>T Gly71Gly
M0117198 FBFHFPKJ_00005 4264 7 Skin 0.44 protein_coding synonymous_variant LOW 156T>C Asp52Asp
M0117199 FBFHFPKJ_00002 4526 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3428C>T None
M0117200 FBFHFPKJ_00002 4620 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3522A>G None
M0117201 FBFHFPKJ_00002 4633 6 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3535C>A None
M0117202 FBFHFPKJ_00003 2043 3 Skin 0.19 protein_coding synonymous_variant LOW 84T>C Ile28Ile
M0117203 FBFHFPKJ_00005 4294 3 Skin 0.19 protein_coding synonymous_variant LOW 126A>G Leu42Leu
M0117204 FBFHFPKJ_00005 4315 3 Skin 0.19 protein_coding synonymous_variant LOW 105T>A Gly35Gly
M0117205 FBFHFPKJ_00002 4493 4 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -3395A>G None
M0117206 FBFHFPKJ_00002 2239 3 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -1141A>G None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term